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tkinterGUI_nw.py
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from tkinter import *
from tkinter import ttk
import tkinter.filedialog as filedialog
from tkinter import messagebox
from PIL import Image,ImageDraw,ImageFont
from PIL import ImageTk,ImageGrab
import cv2
from skimage import filters
#import rasterio
import matplotlib.pyplot as pyplt
#from matplotlib.figure import Figure
import numpy as np
import os
#import time
import csv
import scipy.linalg as la
from functools import partial
#import threading
#import sys
#import kplus
from sklearn.cluster import KMeans
import tkintercorestat
#import tkintercorestat_plot
import tkintercore
import cal_kernelsize
#import histograms
#import createBins
import axistest
#from multiprocessing import Pool
import lm_method
#import batchprocess
import sel_area
class img():
def __init__(self,size,bands):
self.size=size
self.bands=bands
import batchprocess
displayimg={'Origin':None,
'PCs':None,
'Color Deviation':None,
'ColorIndices':None,
'Output':None}
previewimg={'Color Deviation':None,
'ColorIndices':None}
#cluster=['LabOstu','NDI'] #,'Greenness','VEG','CIVE','MExG','NDVI','NGRDI','HEIGHT']
#cluster=['LabOstu','NDI','Greenness','VEG','CIVE','MExG','NDVI','NGRDI','HEIGHT','Band1','Band2','Band3']
cluster=['PAT_R','PAT_G','PAT_B',
'DIF_R','DIF_G','DIF_B',
'GLD_R','GLD_G','GLD_B',
'Band1','Band2','Band3']
# 'ROO_R','ROO_G','ROO_B',
colorbandtable=np.array([[255,0,0],[255,127,0],[255,255,0],[127,255,0],[0,255,255],[0,127,255],[0,0,255],[127,0,255],[75,0,130],[255,0,255]],'uint8')
#print('colortableshape',colortable.shape)
filenames=[]
Multiimage={}
Multigray={}
Multitype={}
Multiimagebands={}
Multigraybands={}
workbandarray={}
displaybandarray={}
originbandarray={}
colorindicearray={}
clusterdisplay={}
kernersizes={}
multi_results={}
outputimgdict={}
outputimgbands={}
outputsegbands={}
originsegbands={}
oldpcachoice=[]
multiselectitems=[]
coinbox_list=[]
pre_checkbox=[]
originpcabands={}
batch={'PCweight':[],
'PCsel':[],
'Kmeans':[],
'Kmeans_sel':[],
'Area_max':[],
'Area_min':[],
'shape_max':[],
'shape_min':[],
'nonzero':[]}
root=Tk()
root.title('GridFree v.1.1.0 ')
root.geometry("")
root.option_add('*tearoff',False)
emptymenu=Menu(root)
root.config(menu=emptymenu)
screenheight=root.winfo_screenheight()
screenwidth=root.winfo_screenwidth()
print('screenheight',screenheight,'screenwidth',screenwidth)
screenstd=min(screenheight-100,screenwidth-100,850)
coinsize=StringVar()
selarea=StringVar()
refvar=StringVar()
imgtypevar=StringVar()
edge=StringVar()
kmeans=IntVar()
pc_combine_up=DoubleVar()
pc_combine_down=IntVar()
filedropvar=StringVar()
displaybut_var=StringVar()
buttonvar=IntVar()
bandchoice={}
checkboxdict={}
#minipixelareaclass=0
coinbox=None
currentfilename=''
currentlabels=None
displaylabels=None
workingimg=None
displaypclabels=None
boundaryarea=None
outputbutton=None
font=None
reseglabels=None
coindict=None
## Funcitons
refarea=None
originlabels=None
originlabeldict=None
changekmeans=False
convband=None
reflabel=0
minflash=[]
dotflash=[]
labelplotmap={}
mappath=''
elesize=[]
labellist=[]
figdotlist={}
havecolorstrip=True
kmeanschanged=False
pcweightchanged=False
originbinaryimg=None
clusterchanged=False
# originselarea=False
# binaryselarea=False
# pcselarea=False
zoomoff=False
kmeanspolygon=False
selview=''
selareapos=[]
kmeanselareapose=[]
binaryselareaspose=[]
maxx=0
minx=0
bins=None
loccanvas=None
linelocs=[0,0,0,0]
maxy=0
miny=0
segmentratio=0
zoombox=[]
displayfea_l=0
displayfea_w=0
resizeshape=[]
previewshape=[]
pcbuttons=[]
pcbuttonsgroup=[]
drawpolygon=False
app=''
pcfilter=[]
def distance(p1,p2):
return np.sum((p1-p2)**2)
def findratio(originsize,objectsize):
oria=originsize[0]
orib=originsize[1]
obja=objectsize[0]
objb=objectsize[1]
if oria>obja or orib>objb:
ratio=round(max((oria/obja),(orib/objb)))
else:
ratio=round(min((obja/oria),(objb/orib)))
# if oria*orib>850 * 850:
if oria*orib>screenstd * screenstd:
if ratio<2:
ratio=2
return ratio
def getkeys(dict):
return [*dict]
def deletezoom(event,widget):
print('leave widget')
if len(zoombox)>0:
for i in range(len(zoombox)):
#print('delete')
widget.delete(zoombox.pop(0))
widget.update()
def zoom(event,widget,img):
global zoombox
x=event.x
y=event.y
#print(x,y)
if len(zoombox)>1:
widget.delete(zoombox.pop(0))
#print('delete')
crop=img.crop((x-15,y-15,x+15,y+15))
w,h=crop.size
#print(w,h)
crop=crop.resize([w*3,h*3],resample=Image.BILINEAR)
w,h=crop.size
crop=ImageTk.PhotoImage(crop)
zoombox.append(widget.create_image(x+5,y-5,image=crop))
root.update_idletasks()
raise NameError
#time.sleep(0.1)
def changedisplay_pc(frame):
for widget in frame.winfo_children():
widget.pack_forget()
#widget.configure(image=displayimg[text])
#widget.image=displayimg[text]
#widget.pack()
w=displayimg['PCs']['Size'][1]
l=displayimg['PCs']['Size'][0]
widget.config(width=w,height=l)
widget.create_image(0,0,image=displayimg['PCs']['Image'],anchor=NW)
widget.pack()
widget.update()
def pcweightupdate(displayframe):
getPCs()
changedisplay_pc(displayframe)
def buttonpress(val,displayframe,buttonframe):
global buttonvar,pc_combine_up,kmeans
buttonvar.set(val)
kmeans.set(1)
pc_combine_up.set(0.5)
buttonchildren=buttonframe.winfo_children()
for child in buttonchildren:
child.config(highlightbackground='white')
print(buttonchildren[val])
buttonchild=buttonchildren[val]
buttonchild.config(highlightbackground='red')
print('press button ',buttonvar.get())
getPCs()
changedisplay_pc(displayframe)
# if kmeans.get()>1:
changekmeansbar('')
beforecluster('')
# changecluster('')
def PCbuttons(frame,displayframe):
#display pc buttons
# buttonvar=IntVar()
#buttonvar.set(0)
for widget in frame.winfo_children():
widget.pack_forget()
buttonframe=LabelFrame(frame)
buttonframe.pack()
for i in range(len(pcbuttons)):
butimg=pcbuttons[i]
but=Button(buttonframe,text='',image=butimg,compound=TOP,command=partial(buttonpress,i,displayframe,buttonframe))
if i==buttonvar.get():
but.config(highlightbackground='red')
row=int(i/3)
col=i%3
# print(row,col)
but.grid(row=int(i/3),column=col)
print('default button',buttonvar.get())
# change cluster,display
def displaypreview(text):
global figcanvas,resviewframe
for widget in resviewframe.winfo_children():
widget.pack_forget()
# previewframe=Canvas(frame,width=450,height=400,bg='white')
figcanvas.pack()
figcanvas.delete(ALL)
if text=='Color Deviation':
previewtext='ColorIndices'
if text=='ColorIndices':
previewtext='Color Deviation'
previewimage=previewimg[previewtext]['Image']
figcanvas.create_image(0,0,image=previewimage,anchor=NW)
figcanvas.update()
def switchevent_shift(event,widget):
global zoomoff,zoomfnid_m,zoomfnid_l,zoombox
global drawpolygon,app,rects
drawpolygon=not drawpolygon
app = sel_area.Application(widget)
app.end(rects)
rects=app.start(selview,0,0,drawpolygon)
print("Drawpolygon to :",drawpolygon)
# zoomoff = True
# if zoomoff==True:
# widget.unbind('<Motion>',zoomfnid_m)
# widget.unbind('<Leave>',zoomfnid_l)
# if len(zoombox)>0:
# for i in range(len(zoombox)):
# widget.delete(zoombox.pop(0))
# widget.update()
# else:
# zoomfnid_m=widget.bind('<Motion>',lambda event,arg=widget:zoom(event,arg,img))
# zoomfnid_l=widget.bind('<Leave>',lambda event,arg=widget:deletezoom(event,arg))
def switchevent(event,widget,img):
global zoomoff,zoomfnid_m,zoomfnid_l,zoombox
zoomoff= not zoomoff
if zoomoff==True:
widget.unbind('<Motion>',zoomfnid_m)
widget.unbind('<Leave>',zoomfnid_l)
if len(zoombox)>0:
for i in range(len(zoombox)):
widget.delete(zoombox.pop(0))
widget.update()
else:
zoomfnid_m=widget.bind('<Motion>',lambda event,arg=widget:zoom(event,arg,img))
zoomfnid_l=widget.bind('<Leave>',lambda event,arg=widget:deletezoom(event,arg))
def changedisplayimg(frame,text):
global displaybut_var,figcanvas,resviewframe,reflabel
displaybut_var.set(disbuttonoption[text])
for widget in frame.winfo_children():
widget.pack_forget()
#widget.configure(image=displayimg[text])
#widget.image=displayimg[text]
#widget.pack()
w=displayimg[text]['Size'][1]
l=displayimg[text]['Size'][0]
widget.config(width=w,height=l)
widget.create_image(0,0,image=displayimg[text]['Image'],anchor=NW)
widget.pack()
widget.update()
global rects,selareapos,app,delapp,delrects,delselarea,selview
global zoomfnid_m,zoomfnid_l,kmeanselareapose,drawpolygon
global app
try:
selareadim = app.getinfo(rects[1])
if selareadim != [0, 0, 1, 1]:
selareapos = selareadim
selview = app.getselview()
# drawpolygon = app.getdrawpolygon()
app.end(rects)
except:
pass
try:
# widget.unbind('<Shift-Double-Button-1>')
# widget.unbind('<Double-Button-1>')
widget.unbind('<Motion>')
except:
pass
app = sel_area.Application(widget)
# delapp=sel_area.Application(widget)
if text=='Output':
try:
image=outputsegbands[currentfilename]['iter0']
displayfig()
except:
return
zoomfnid_m=widget.bind('<Motion>',lambda event,arg=widget:zoom(event,arg,image))
zoomfnid_l=widget.bind('<Leave>',lambda event,arg=widget:deletezoom(event,arg))
delrects=app.start('Output',zoomfnid_m,zoomfnid_l,False)
widget.bind('<Double-Button-1>',lambda event,arg=widget:switchevent(event,arg,image))
print('delrects',delrects)
else:
reflabel=0
print('reflabel=',reflabel)
try:
delelareadim=app.getinfo(delrects[1])
if delelareadim!=[]:
delselarea=delelareadim
app.end(rects)
except:
pass
if text=='Origin':
try:
image=originsegbands['Origin']
zoomfnid_m=widget.bind('<Motion>',lambda event,arg=widget:zoom(event,arg,image))
zoomfnid_l=widget.bind('<Leave>',lambda event,arg=widget:deletezoom(event,arg))
except:
return
widget.bind('<Double-Button-1>',lambda event,arg=widget:switchevent(event,arg,image))
widget.bind('<Shift-Double-Button-1>', lambda event,arg=widget:switchevent_shift(event,arg))
for widget in resviewframe.winfo_children():
widget.pack_forget()
rects=app.start('Origin')
selview = app.getselview()
print(rects)
if text=='PCs':
if selview=='Origin' and len(selareapos)>0 and selareapos!=[0,0,1,1]:
# selareadim=app.getinfo(rects[1])
# if selareadim!=[0,0,1,1] and selareadim!=[] and selareadim!=selareapos:
# selareapos=selareadim
# if selareapos!=[0,0,1,1] and originselarea==True:
#need to redo PCA
# kmeanselareapose=selareapos.copy()
npfilter=np.zeros((displayimg['Origin']['Size'][0],displayimg['Origin']['Size'][1]))
print("npfilter shape:", npfilter.shape)
filter=Image.fromarray(npfilter)
draw=ImageDraw.Draw(filter)
if drawpolygon==False:
draw.ellipse(selareapos,fill='red')
else:
draw.polygon(selareapos,fill='red')
global pcfilter
pcfilter=selareapos.copy()
filter=np.array(filter)
filter=np.divide(filter,np.max(filter))
filter=cv2.resize(filter,(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)
partialsingleband(filter)
for widget in resviewframe.winfo_children():
widget.pack_forget()
PCbuttons(resviewframe,frame)
# try:
# image = displayimg['ColorIndices']['Image']
# zoomfnid_m = widget.bind('<Motion>', lambda event, arg=widget: zoom(event, arg, image))
# zoomfnid_l = widget.bind('<Leave>', lambda event, arg=widget: deletezoom(event, arg))
#
# except:
# return
# widget.bind('<Double-Button-1>', lambda event, arg=widget: switchevent(event, arg, image))
widget.bind('<Shift-Double-Button-1>', lambda event, arg=widget: switchevent_shift(event, arg))
rects = app.start('PCs',0,0,drawpolygon)
selview = app.getselview()
print(rects)
# else:
# widget.unbind('<Motion>')
if text=='Color Deviation':
widget.bind('<Shift-Double-Button-1>', lambda event, arg=widget: switchevent_shift(event, arg))
rects = app.start('Color Deviation',0,0,drawpolygon)
selview = app.getselview()
print(rects)
#displaypreview
displaypreview(text)
pass
if text=='ColorIndices':
#displaypreview
displaypreview(text)
# widget.bind('<Shift-Double-Button-1>', lambda event,arg=widget:switchevent_shift(event,arg))
# for widget in resviewframe.winfo_children():
# widget.pack_forget()
# rects=app.start('ColorIndices')
# selview=app.getselview()
# print(rects)
#print('change to '+text)
#time.sleep(1)
def updateresizeshape(shape,content):
shape.append(int(content))
return shape
def generatedisplayimg(filename): # init display images
global resizeshape,previewshape
try:
# firstimg=Multiimagebands[filename]
#height,width=firstimg.size
# height,width,c=displaybandarray[filename]['LabOstu'].shape
bandsize=Multiimagebands[filename].size
if bandsize[0]*bandsize[1]>2000*2000:
ratio=findratio([bandsize[0],bandsize[1]],[2000,2000])
else:
ratio=1
height,width=bandsize[0]/ratio,bandsize[1]/ratio
# ratio=findratio([height,width],[850,850])
ratio=findratio([height,width],[screenstd,screenstd])
print('displayimg ratio',ratio)
resizeshape=[]
# if height*width<850*850:
if height*width<screenstd*screenstd:
#resize=cv2.resize(Multiimage[filename],(int(width*ratio),int(height*ratio)),interpolation=cv2.INTER_LINEAR)
updateresizeshape(resizeshape,width*ratio)
updateresizeshape(resizeshape,height*ratio)
# resizeshape.append(width*ratio)
# resizeshape.append(height*ratio)
if height>screenstd:
resizeshape=[]
ratio=round(height/screenstd)
updateresizeshape(resizeshape,width*ratio)
updateresizeshape(resizeshape,height*ratio)
if width>screenstd:
resizeshape=[]
ratio=round(width/screenstd)
updateresizeshape(resizeshape,width*ratio)
updateresizeshape(resizeshape,height*ratio)
else:
#resize=cv2.resize(Multiimage[filename],(int(width/ratio),int(height/ratio)),interpolation=cv2.INTER_LINEAR)
updateresizeshape(resizeshape,width/ratio)
updateresizeshape(resizeshape,height/ratio)
ratio=findratio([height,width],[400,450])
previewshape=[]
if height*width<450*400:
#resize=cv2.resize(Multiimage[filename],(int(width*ratio),int(height*ratio)),interpolation=cv2.INTER_LINEAR)
updateresizeshape(previewshape,width*ratio)
updateresizeshape(previewshape,height*ratio)
if height>400:
ratio=round(height/screenstd)
if ratio!=0:
previewshape = []
updateresizeshape(previewshape,width/ratio)
updateresizeshape(previewshape,height/ratio)
if width>450:
ratio=round(width/screenstd)
if ratio!=0:
previewshape = []
updateresizeshape(previewshape,width/ratio)
updateresizeshape(previewshape,height/ratio)
else:
#resize=cv2.resize(Multiimage[filename],(int(width/ratio),int(height/ratio)),interpolation=cv2.INTER_LINEAR)
updateresizeshape(previewshape,width/ratio)
updateresizeshape(previewshape,height/ratio)
resize=cv2.resize(Multiimage[filename],(int(resizeshape[0]),int(resizeshape[1])),interpolation=cv2.INTER_LINEAR)
originimg=Image.fromarray(resize.astype('uint8'))
originsegbands.update({'Origin':originimg})
rgbimg=Image.fromarray(resize.astype('uint8'))
draw=ImageDraw.Draw(rgbimg)
suggsize=14
font=ImageFont.truetype('cmb10.ttf',size=suggsize)
content='\n File: '+filename
draw.text((10-1, 10+1), text=content, font=font, fill='white')
draw.text((10+1, 10+1), text=content, font=font, fill='white')
draw.text((10-1, 10-1), text=content, font=font, fill='white')
draw.text((10+1, 10-1), text=content, font=font, fill='white')
#draw.text((10,10),text=content,font=font,fill=(141,2,31,0))
draw.text((10,10),text=content,font=font,fill='black')
rgbimg=ImageTk.PhotoImage(rgbimg)
tempdict={}
tempdict.update({'Size':resize.shape})
tempdict.update({'Image':rgbimg})
except:
tempdict={}
tempimg=np.zeros((screenstd,screenstd))
tempdict.update({'Size':tempimg.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempimg.astype('uint8')))})
displayimg['Origin']=tempdict
#if height*width<850*850:
# resize=cv2.resize(Multigray[filename],(int(width*ratio),int(height*ratio)),interpolation=cv2.INTER_LINEAR)
#else:
#resize=cv2.resize(Multigray[filename],(int(width/ratio),int(height/ratio)),interpolation=cv2.INTER_LINEAR)
tempimg=np.zeros((screenstd,screenstd))
tempdict={}
try:
tempdict.update({'Size':resize.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(np.zeros((int(resizeshape[1]),int(resizeshape[0]))).astype('uint8')))})
except:
tempdict.update({'Size':tempimg.shape})
#if height*width<850*850:
# tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(np.zeros((int(height*ratio),int(width*ratio))).astype('uint8')))})
#else:
# tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(np.zeros((int(height/ratio),int(width/ratio))).astype('uint8')))})
# tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(np.zeros((int(resizeshape[1]),int(resizeshape[0]))).astype('uint8')))})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempimg.astype('uint8')))})
displayimg['Output']=tempdict
tempdict={}
try:
tempdict.update({'Size':resize.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(np.zeros((int(resizeshape[1]),int(resizeshape[0]))).astype('uint8')))})
except:
tempdict.update({'Size':tempimg.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempimg.astype('uint8')))})
displayimg['PCs']=tempdict
tempdict={}
temppreviewdict={}
temppreviewimg=np.zeros((450,400))
try:
tempband=np.zeros((displaybandarray[filename]['LabOstu'][:,:,0].shape))
# tempband=tempband+displaybandarray[filename]['LabOstu']
# ratio=findratio([tempband.shape[0],tempband.shape[1]],[850,850])
#if tempband.shape[0]*tempband.shape[1]<850*850:
# tempband=cv2.resize(ratio,(int(tempband.shape[1]*ratio),int(tempband.shape[0]*ratio)),interpolation=cv2.INTER_LINEAR)
#else:
# tempband=cv2.resize(ratio,(int(tempband.shape[1]/ratio),int(tempband.shape[0]/ratio)),interpolation=cv2.INTER_LINEAR)
tempband=cv2.resize(tempband,(int(resizeshape[0]),int(resizeshape[1])),interpolation=cv2.INTER_LINEAR)
tempdict.update({'Size':tempband.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempband[:,:,2].astype('uint8')))})
temppreview=cv2.resize(tempband,(int(previewshape[0]),int(previewshape[1])),interpolation=cv2.INTER_LINEAR)
temppreview=Image.fromarray(temppreview.astype('uint8'))
temppreviewdict.update({'Size':previewshape})
temppreviewdict.update({'Image':ImageTk.PhotoImage(temppreview)})
# print('resizeshape',resizeshape)
#pyplt.imsave('displayimg.png',tempband[:,:,0])
#indimg=cv2.imread('displayimg.png')
except:
tempdict.update({'Size':tempimg.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempimg.astype('uint8')))})
temppreviewdict.update({'Size':temppreviewimg.shape})
temppreviewdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(temppreviewimg.astype('uint8')))})
displayimg['ColorIndices']=tempdict
previewimg['ColorIndices']=temppreviewdict
#resize=cv2.resize(Multigray[filename],(int(resizeshape[0]),int(resizeshape[1])),interpolation=cv2.INTER_LINEAR)
#grayimg=ImageTk.PhotoImage(Image.fromarray(resize.astype('uint8')))
#tempdict={}
#tempdict.update({'Size':resize.shape})
#tempdict.update({'Image':grayimg})
tempdict={}
temppreviewdict={}
try:
colordeviate=np.zeros((tempband[:,:,0].shape[0],tempband[:,:,0].shape[1],3),'uint8')
kvar=int(kmeans.get())
for i in range(kvar):
locs=np.where(tempband[:,:,0]==i)
colordeviate[locs]=colorbandtable[i,:]
# pyplt.imsave('colordeviation.png',colordeviate)
# # colordevimg=Image.fromarray(colordeviate.astype('uint8'))
# # colordevimg.save('colordeviation.png',"PNG")
# testcolor=Image.open('colordeviation.png')
print('colordeviation.png')
# colortempdict={}
colordeviate=cv2.resize(colordeviate,(int(resizeshape[0]),int(resizeshape[1])),interpolation=cv2.INTER_LINEAR)
tempdict.update({'Size':colordeviate.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(colordeviate.astype('uint8')))})
# colortempdict.update({'Size':colordeviate.shape})
# colortempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(colordeviate.astype('uint8')))})
# colortempdict.update({'Image':ImageTk.PhotoImage(testcolor)})
# tempdict={}
temppreview=cv2.resize(colordeviate,(int(previewshape[0]),int(previewshape[1])),interpolation=cv2.INTER_LINEAR)
temppreviewdict.update({'Size':temppreview.shape})
temppreviewdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(temppreview[:,:,0].astype('uint8')))})
except:
tempdict.update({'Size':tempimg.shape})
tempdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(tempimg.astype('uint8')))})
temppreviewdict.update({'Size':temppreviewimg.shape})
temppreviewdict.update({'Image':ImageTk.PhotoImage(Image.fromarray(temppreviewimg.astype('uint8')))})
# displayimg['Color Deviation']=colortempdict
displayimg['Color Deviation']=tempdict
previewimg['Color Deviation']=temppreviewdict
def Open_File(filename): #add to multi-image,multi-gray #call band calculation
global Multiimage,Multigray,Multitype,Multiimagebands,Multigraybands,filenames
try:
Filersc=cv2.imread(filename,flags=cv2.IMREAD_ANYCOLOR)
ndim=np.ndim(Filersc)
if ndim==2:
height,width=np.shape(Filersc)
channel=1
Filersc.reshape((height,width,channel))
else:
height,width,channel=np.shape(Filersc)
Filesize=(height,width)
print('filesize:',height,width)
RGBfile=cv2.cvtColor(Filersc,cv2.COLOR_BGR2RGB)
Multiimage.update({filename:RGBfile})
if ndim==2:
Grayfile=np.copy(Filersc)
else:
Grayfile=cv2.cvtColor(Filersc,cv2.COLOR_BGR2Lab)
Grayfile=cv2.cvtColor(Grayfile,cv2.COLOR_BGR2GRAY)
#Grayfile=cv2.GaussianBlur(Grayfile,(3,3),cv2.BORDER_DEFAULT)
#ostu=filters.threshold_otsu(Grayfile)
#Grayfile=Grayfile.astype('float32')
#Grayfile=Grayfile/ostu
Grayimg=img(Filesize,Grayfile)
RGBbands=np.zeros((channel,height,width))
for j in range(channel):
band=RGBfile[:,:,j]
band=np.where(band==0,1e-6,band)
nans=np.isnan(band)
band[nans]=1e-6
#ostu=filters.threshold_otsu(band)
#band=band/ostu
RGBbands[j,:,:]=band
RGBimg=img(Filesize,RGBbands)
tempdict={filename:RGBimg}
Multiimagebands.update(tempdict)
tempdict={filename:Grayfile}
Multigray.update(tempdict)
tempdict={filename:0}
Multitype.update(tempdict)
tempdict={filename:Grayimg}
Multigraybands.update(tempdict)
except:
messagebox.showerror('Invalid Image Format','Cannot open '+filename)
return False
filenames.append(filename)
return True
def Open_Map():
if proc_mode[proc_name].get()=='1':
batchprocess.Open_batchfile()
return
global mappath,elesize,labellist
filepath=filedialog.askopenfilename()
if len(filepath)>0:
if 'csv' in filepath:
mappath=filepath
elesize=[]
labellist=[]
rows=[]
print('open map at: '+mappath)
with open(mappath,mode='r',encoding='utf-8-sig') as f:
csvreader=csv.reader(f)
for row in csvreader:
rows.append(row)
temprow=[]
for ele in row:
if ele is not '':
temprow.append(ele)
elesize.append(len(temprow))
for i in range(len(rows)):
for j in range(len(rows[i])):
if rows[i][j]!='':
labellist.append(rows[i][j])
else:
messagebox.showerror('Invalide File',message='Please open csv formate file as map file.')
corlortable=tkintercorestat.get_colortable(reseglabels)
tup=(reseglabels,[],corlortable,{},currentfilename)
print(elesize)
mapdict,mapimage,smallset=showcounting(tup,True,True,True)
tempimgbands={}
tempimgdict={}
tempsmall={}
tempimgbands.update({'iter0':mapimage})
tempimgdict.update({'iter0':mapdict})
tempsmall.update({'iter0':smallset})
outputimgdict.update({currentfilename:tempimgdict})
outputimgbands.update({currentfilename:tempimgbands})
outputsegbands.update({currentfilename:tempsmall})
changeoutputimg(currentfilename,'1')
def Open_Multifile():
global extractbutton,outputbutton
if proc_mode[proc_name].get()=='1':
batchprocess.Open_batchfolder()
# extractbutton.config(state=NORMAL)
outputbutton.config(state=NORMAL)
return
# else:
# extractbutton.config(state=DISABLED)
global Multiimage,Multigray,Multitype,Multiimagebands,changefileframe,imageframe,Multigraybands,filenames
global changefiledrop,filedropvar,originbandarray,displaybandarray,clusterdisplay,currentfilename,resviewframe
global refsubframe,reseglabels,refbutton,figcanvas,loccanvas,originlabels,changekmeans,refarea
global originlabeldict,convband,panelA
global havecolorstrip
global colordicesband,oldpcachoice
global pccombinebar_up
global displaylabels,displaypclabels
global buttonvar
global colorindicearray
global selarea
global app,drawpolygon,binaryselareaspose
MULTIFILES=filedialog.askopenfilenames()
root.update()
if len(MULTIFILES)>0:
Multiimage={}
Multigray={}
Multitype={}
Multiimagebands={}
Multigraybands={}
filenames=[]
originbandarray={}
colorindicearray={}
displaybandarray={}
clusterdisplay={}
oldpcachoice=[]
reseglabels=None
originlabels=None
originlabeldict=None
#changekmeans=True
convband=None
refvar.set('0')
kmeans.set('2')
panelA.delete(ALL)
panelA.unbind('<Button-1>')
panelA.unbind('<Shift-Button-1>')
refarea=None
havecolorstrip=False
displaypclabels=None
app = ''
drawpolygon=False
binaryselareaspose=[]
buttonvar.set(0)
# if 'NDI' in bandchoice:
# bandchoice['NDI'].set('1')
# if 'NDVI' in bandchoice:
# bandchoice['NDVI'].set('1')
refbutton.config(state=DISABLED)
# selareabutton.configure(state=DISABLED)
selarea.set('0')
figcanvas.delete(ALL)
#loccanvas=None
for widget in refsubframe.winfo_children():
widget.config(state=DISABLED)
#for widget in resviewframe.winfo_children():
# widget.config(state=DISABLED)
if outputbutton is not None:
outputbutton.config(state=DISABLED)
for i in range(len(MULTIFILES)):
if Open_File(MULTIFILES[i])==False:
return
generatedisplayimg(filenames[0])
changedisplayimg(imageframe,'Origin')
# imageframe.update()
# raise NameError
# yield
# thread=threading.Thread(target=singleband,args=(MULTIFILES[i],))
singleband(MULTIFILES[i])
# thread.start()
# thread.join()
for widget in changefileframe.winfo_children():
widget.pack_forget()
currentfilename=filenames[0]
# filedropvar.set(filenames[0])
# changefiledrop=OptionMenu(changefileframe,filedropvar,*filenames,command=partial(changeimage,imageframe))
# changefiledrop.pack()
#singleband(filenames[0])
generatedisplayimg(filenames[0])
# changedisplayimg(imageframe,'Origin')
getPCs()
if len(bandchoice)>0:
for i in range(len(cluster)):
bandchoice[cluster[i]].set('')
#changedisplayimg(imageframe,'Origin')
kmeans.set(1)
#reshapemodified_tif=np.zeros((displaybandarray[currentfilename]['LabOstu'].shape[0]*displaybandarray[currentfilename]['LabOstu'].shape[1],3))
#colordicesband=kmeansclassify(['LabOstu'],reshapemodified_tif)
displaylabels=kmeansclassify()
generateimgplant('')
changedisplayimg(imageframe,'Origin')
# if len(bandchoice)>0:
# bandchoice['LabOstu'].set('1')
global buttondisplay,pcaframe,kmeansbar
for widget in buttondisplay.winfo_children():
widget.config(state=NORMAL)
# for widget in pcaframe.winfo_children():
# for widget in pcselframe.winfo_children():
# widget.config(state=NORMAL)
extractbutton.config(state=NORMAL)
kmeansbar.state(["!disabled"])
pccombinebar_up.state(["!disabled"])
def fillpartialbands(vector,vectorindex,band,filter_vector):
nonzero=np.where(filter_vector!=0)
vector[nonzero,vectorindex]=vector[nonzero,vectorindex]+band
def fillbands(originbands,displaybands,vector,vectorindex,name,band,filter=0):
tempdict={name:band}
if isinstance(filter,int):
if name not in originbands:
originbands.update(tempdict)
image=cv2.resize(band,(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)
displaydict={name:image}
displaybands.update(displaydict)
fea_bands=image.reshape((displayfea_l*displayfea_w),1)[:,0]
vector[:,vectorindex]=vector[:,vectorindex]+fea_bands
else:
if name not in originbands:
originbands.update(tempdict)
image=cv2.resize(band,(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)
image=np.multiply(image,filter)
displaydict={name:image}
displaybands.update(displaydict)
fea_bands=image.reshape((displayfea_l*displayfea_w),1)[:,0]
vector[:,vectorindex]=vector[:,vectorindex]+fea_bands
return
def plot3d(pcas):
from mpl_toolkits.mplot3d import Axes3D # noqa: F401 unused import
import matplotlib.pyplot as plt
fig=plt.figure()
ax=fig.add_subplot(111,projection='3d')
x=pcas[:,0]
y=pcas[:,1]
z=pcas[:,2]*0+np.min(pcas[:,2])
ax.scatter(x,y,z,color='tab:purple')
x=pcas[:,0]*0+np.min(pcas[:,0])
y=pcas[:,1]
z=pcas[:,2]
ax.scatter(x,y,z,color='tab:pink')
x=pcas[:,0]
y=pcas[:,1]*0+np.max(pcas[:,1])
z=pcas[:,2]
ax.scatter(x,y,z,color='tab:olive')
ax.set_xlabel('Color Indices PC1')
ax.set_ylabel('Color Indices PC2')
ax.set_zlabel('Color Indices PC3')
# plt.show()
plt.savefig('3dplot_PC.png')
def partialoneband(filter):
global displaybandarray,originpcabands
global pcbuttons
global nonzero_vector,partialpca
partialpca=True
print('partialpcs is True')
bands=Multiimagebands[currentfilename].bands
channel,fea_l,fea_w=bands.shape
nonzero=np.where(filter!=0)
RGB_vector=np.zeros((displayfea_l*displayfea_w,3))
colorindex_vector=np.zeros((displayfea_l*displayfea_w,12))
filter_vector=filter.reshape((displayfea_l*displayfea_w),1)[:,0]
originbands={}
displays={}
Red=cv2.resize(bands[0,:,:],(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)[nonzero]
Green=cv2.resize(bands[0,:,:],(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)[nonzero]
# Red=cv2.adaptiveThreshold(Red,255,cv2.ADAPTIVE_THRESH_MEAN_C,cv2.THRESH_BINARY,11,2)
# Green=cv2.adaptiveThreshold(Green,255,cv2.ADAPTIVE_THRESH_GAUSSIAN_C,cv2.THRESH_BINARY,11,2)
Blue=cv2.resize(bands[0,:,:],(displayfea_w,displayfea_l),interpolation=cv2.INTER_LINEAR)[nonzero]
# Blue=cv2.threshold(Blue,0,255,cv2.THRESH_BINARY+cv2.THRESH_OTSU)
fillpartialbands(RGB_vector,0,Red,filter_vector)
fillpartialbands(RGB_vector,1,Green,filter_vector)
fillpartialbands(RGB_vector,2,Blue,filter_vector)
PAT_R=Red
PAT_G=Red
PAT_B=Red
ROO_R=Red