README

Fealden is a tool for the automated creation of Transcription Factor 
Beacons, novel biosensor probes for transcription factor activity and 
quantity.

More information may be found about the sensors at 
Transcription Factor Beacons for the Quantitative Detection of DNA 
Binding Activity
Andrew J. Bonham, Alexis Vallée-Bélisle, Norbert O. Reich, 
Francesco Ricci, and Kevin W. Plaxco. 
J. Am. Chem. Soc., Article ASAP, 2011, 
doi:10.1021/ja204775k http://dx.doi.org/10.1021/ja204775k

Fealden is a two part server, the first part, fealdend, actually
performs the searching and prepares final output. The second part,
webfealden.py actually provides the web interface. Both parts use a
single configuration file, fealden.ini that must be located in one of
the following places:

/etc/fealden.ini
./etc/fealden.ini
../etc/fealden.ini
./fealden.ini

If fealden.ini is *not* found, then both processes will not start.