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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

Generated by auto-changelog.

Merged

v1.6.0 - 2024-11-14

Merged

  • Support displaying annotation tool on sidebar #251
  • Fix connectivity list hover #255
  • Making connectivity entries interactive #252
  • Connectivity Graph #250
  • Clear invalid drawn feature #9
  • Make sure contextual information does not flip up. #254
  • Fix ESC fullscreen toggle #253

Commits

  • Update flatmapvuer and scaffoldvuer. 39108e4
  • Update packages for connectivity graph fe3f98d
  • Update flatmapvuer version 6d3921a

v1.5.2 - 2024-10-16

Merged

  • Close sidebar on species change #249

Commits

  • Update scaffoldvuer and flatmapvuer. 8785946

v1.5.1 - 2024-10-09

Merged

  • Security updates #248
  • Remove hardcoded interactions. #247

Commits

  • Update map-utilities svg-sprite plotvuer versions cacd3bf
  • Remove unused cypress/webpack-dev-server for security fix 52d245b
  • Update dependencies for consistency f5c8e5a

v1.5.0 - 2024-09-19

Merged

  • Change default species to human male. #245

Commits

v1.4.2 - 2024-09-11

Merged

  • Flatmapvuer update. #244

v1.4.1 - 2024-09-03

Merged

  • Increment update to flatmapvuer and scaffoldvuer. #243

Commits

  • Increment flatmapvuer. 52547fd
  • Update scaffoldvuer and flatmapvuer. 40be04a

v1.4.0 - 2024-08-15

Merged

  • Get all the dependencies ready for 1.4.0 release. #241
  • Bring back FC map markers #240
  • Portal integration style fixes #239
  • Map annotation shortcut #238
  • Update context card text style #237
  • Feature/copy to clipboard #236
  • Solve markers conflict #235

Commits

  • Update changelog 5440f77
  • Update changelog 51d7a59
  • Update map-utilities beta version for copy-to-clipboard a0d2396

v1.3.4 - 2024-07-19

Merged

  • Update beta version 1.3.3-beta.0 #233
  • Call get organ curies once only. #234

Commits

  • Udpate scaffoldvuer to 1.3.3. b82f7e6
  • Update beta version to 1.3.4-beta.1 8047fd9
  • Update beta version 1.3.4-beta.0 60f6b4c

v1.3.3 - 2024-07-11

Merged

  • Update scaffoldvuer 1.3.2 which address issues with markers cluster. #232

v1.3.2 - 2024-07-11

Merged

  • Set connectivity info in sidebar as default #231

Commits

v1.3.1 - 2024-07-11

Commits

  • Remove update to simulationvuer for the time being. 6fb61be

v1.3.0 - 2024-07-10

Merged

  • Update scaffoldvuer, map-utilities and simulationvuer before the new release. #230
  • Display connectivity info without obstructing current map view #223
  • Improvement - hover to highlight features #229
  • Map utilities #220
  • Heroku #225

Commits

  • Update map-utilities and simulationvuer before the new release. ef2e7b2
  • Merged in upstream changes. b9469ea
  • Use @abi-software/map-utilities 6ceae71

v1.2.1 - 2024-06-24

Merged

  • Supports cluster markers with scaffoldvuer #224

Commits

  • Support scaffoldvuer markers with number. 0982fe4
  • Update to flatmapvuer 1.2.0. e5fed03

v1.2.0 - 2024-06-21

Merged

  • Catch exception from flatmap-viewer which is crashing the test #221
  • Move the zoom level marker updates to flatmap-viewer #201
  • Marker clustering #2

Commits

  • First attempt at using new dataset markers c298a03
  • Update flatmap-viewer 40fee70
  • Support marker cluster with scaffoldvuer. 61c346e

v1.1.1 - 2024-06-06

Merged

  • Pre 1.1.1 release #219
  • Fix a warning regarding multiple root elements. #218
  • Fix missing ref issue for lazy load components #217

Commits

  • Fix missing ref issue for lazy load components while the page is still loading 1495606
  • Update to flatmapvuer 1.1.1. 95d86e7

v1.1.0 - 2024-05-29

Merged

  • Pre 1.1.0 bug fixes #216
  • Optimise performance of components loading #212
  • Flatmap improvements - help text visible #211
  • Sckan version on context card #215
  • Update tagging js by emitting event #214
  • zoom in marker #209
  • Fix an issue when clicking on a markers on the fc map #213
  • remove i icon and keep text only #208

Commits

  • Use the latest viewers with help dialog update. d6f57b1
  • Integrate HelpModeDialog from both flatmap and scaffold caf0cc8
  • Reset spliteflow before mounted. 301d585

v1.0.4 - 2024-05-16

Commits

  • Fix a small issue with tagging on gallery click fbf30d3
  • Fix a small issue with tagging on gallery click b298595

v1.0.3 - 2024-05-16

Merged

  • Map Metrics #207
  • Get context cards working for external scaffold opens #202

Commits

  • Update map filter event tracking f3c26b9
  • Add connectivity tracking on clicking nerve e4b084a
  • Add missing semicolons 5da7b5d

v1.0.2 - 2024-05-01

Commits

  • Update flatmapvuer and scaffoldvuer. 4fcf5d0

v1.0.1 - 2024-04-28

Merged

  • Include a fix which fixes facets issue on the sidebar. #205
  • 1.0.0 #204

Commits

  • Update build and release script. 4ab5714

v1.0.0 - 2024-04-24

Merged

  • Getting package and testing ready for v1.0.0 #203
  • Annotation authentication #198
  • Bugfix/cypress component test #200
  • API Documentation #197
  • Fix cypress component test issue #199
  • Remove unused npm packages #196
  • Fix featured marker by switching to the new api #194
  • Make sure scaffoldvuer uses the same version of flatmapvuer. #195
  • Migration to vue 3. #193
  • Adjust toolbar items alignments #8
  • Fix search box spacing #7
  • Fix popover position top in ContentVuer #6

Commits

  • Remove most of the warning. 57f7431
  • Use the latest plotvuer and simulationvuer. 123b89d
  • Improve and fix testing error. b71e1e6

v0.6.7 - 2024-01-05

Merged

Commits

  • Update unit test. 3a92d5a
  • Fix an issue with state not being reset. eb73cee

v0.6.6 - 2024-01-05

Merged

  • Fix issue with new s3 bucket file information. #190

v0.6.5 - 2023-12-15

Merged

  • Featured marker qa fix #189

Commits

  • Update flatmapvuer with text fix in legend for featured marker decb46f
  • Update flatmapvuer with qa fix and new 'whats new' text 5d0da9f
  • Update build_and_release.yml 42b0d3c

v0.6.4 - 2023-12-11

Merged

  • Update test. #188
  • Get mapviewer ready for 0.6.4 release. #187
  • Add more pane options #186
  • Add a vertical six pane option #5
  • Markers #185
  • Flatmap provenance card change against species #184
  • Simplify the codes. #1
  • Update and modify prop paths for sidebar #181
  • Add featured marker to legend, show if we have a featured marker #183
  • Improve the styling works of each content with resize sensor #182
  • Add search history and provenance pop up now has show/hide #180

Commits

  • Update package version. 736a3f5
  • Add search history and dropdown c310505
  • Fix issue with resizing in some rare occasion. 98f2a09

v0.6.3 - 2023-10-26

Merged

  • Fix unit test failure caused by a newly added function calls. #179
  • Close sidebar on opening new entries to view context card #178
  • Bug fix on context info display of whole body scaffold. #177
  • Redesign splitpanebar #176

Commits

  • Complete rework of splitpane bar which is now content bar and maintain 1 to 1 ration with contentvuer. 99a12f5
  • Move entries data to store. c4ef9b5
  • Remove more unused variables. 68a3a91

v0.6.2 - 2023-10-01

Merged

  • Fix 'SCKAN' mispelling, update scaffoldvuer #175

Commits

v0.6.1 - 2023-09-19

Merged

  • Add a facet event to scaffold markers #174

v0.6.0 - 2023-09-18

Merged

  • Add context card to whole body scaffold #173
  • Context cards migration #172
  • Context cards migration #171

Commits

  • Bring context card to mapintegratedvuer 7a8ad31
  • Updat get wholebody scaffold logic to include information of contextual information. 8563fa4
  • Bring flatmap context card into mapintegratedvuer: 029332a

v0.5.1 - 2023-08-08

Commits

  • Update flatmapvuer which fixes a bug. ff1d86f

v0.5.0 - 2023-08-07

Merged

  • Open new map #170
  • Set FC map as a multi flatmap so it has dynamic markers #169

Commits

  • Merged in upstream changes. 021b09f
  • Update dependency and package in maplibre-gl. 8e75717
  • Merge in upstream changes. aa9ba0a

v0.4.7 - 2023-07-20

Merged

  • Improve multiflatmap start up. #168

Commits

  • Remove a prop containing fixed value. d663a12
  • Update scaffoldvuer. 438e1ed
  • Improve open search method. ebaf496

v0.4.6 - 2023-07-03

Merged

  • Update flatmapvuer to 0.5.4 #166
  • Update build #156
  • Fix an issue with marked not built in. #165
  • Add a isReady function for map viewer. #164
  • Enable minimap and support term search to display human readable label #163
  • Make sure flatmapvuer works with the maplibregl #162
  • Update beta text for whole body scaffold and flatmaps. #161
  • Add new yaml file for github action. #3
  • Update build #2

Commits

  • Minimise package changes. d6fb0f6
  • Switch to using html reports. 1ec3023
  • Fix missing end of files line break. c0db1ab

v0.4.4 - 2023-06-01

v0.4.4-fixes-4 - 2023-06-15

Merged

  • Add a isReady function for map viewer. #164

Commits

  • Fix an issue with marked not built in. b3643bc

v0.4.4-fixes-3 - 2023-06-05

Merged

  • Enable minimap and support term search to display human readable label #163

Commits

  • Add an is ready function. f3e7015

v0.4.4-fixes-2 - 2023-06-05

Merged

  • Make sure flatmapvuer works with the maplibregl #162

Commits

  • Support term search to display human readable label 397c523
  • Enable minimap. 23b060f

v0.4.4-fixes-0 - 2023-06-02

Merged

  • Update beta text for whole body scaffold and flatmaps. #161

Commits

  • Udpate packages. d7cec09
  • Update warning message for whole body scaffold. 3db44e7
  • Update to flatmapvuer with css fix. 8d60b95

v0.4.3 - 2023-05-29

Merged

  • Flatmap search fix #160

Commits

  • Update flatmapvuer (small logic fix) 2e5207e
  • Update flatmapvuer 0c267d6

v0.4.1 - 2023-05-10

Commits

  • Use the latest version of flatmapvuer. d225cc4

v0.4.0 - 2023-05-10

Merged

  • Support starting up the map vuer with different type (AC, FC and WholeBody) #158
  • Scaffold search #159
  • Update to use the lastest map svg sprite. #155

Commits

  • Allow flatmap to be set using api. 4d8041d
  • Allow starting map to be choosen from AC, FC or WholeBody. 12974b7
  • Merge in changes with updated interaction between 2D and 3D maps. 7112ae2

v0.3.15 - 2023-04-04

Merged

  • Funcionality to support featured datasets #151
  • Dynamically fetch whole body scaffold url for human. #154

Commits

  • Increment version to 0.3.15. 9041fd3
  • Update package-lock.json f41e04d
  • Merge in upstream changes. 381b68c

v0.3.14 - 2023-03-23

Merged

  • Update scaffoldvuer and map-sidebar which supports the dynamic s3bucket. #152
  • Fix a bug causing marker to not set the facet on sidebar properly. #150

Commits

  • update scaffoldvuer and map-sidebar which supports the dynamic s3bucket. f8bb5a6
  • Remove comment. b34c789

v0.3.13 - 2023-02-27

v0.3.13-fix-1 - 2023-02-28

Merged

Commits

  • Fix markers not being displayed occasionally at start. 0d4b821
  • Fix a bug causing marker to not set the facet on sidebar properly. 9aa8bfa
  • Use the latest flatmpvuer and increment version. 36fd5dc

v0.3.12 - 2023-02-21

Merged

  • Add support to uuid for setting current entry of flatmap. #148
  • Set current entry #147
  • Permalink update #146
  • Permalink update and scaffold performance update #142

Commits

  • Initial work to set initial viewer settings for mapviewer. a0b4d5d
  • Add codes comment and remove unused styles. 664d86a
  • Add the mssing source file. 15aa878

v0.3.11 - 2023-01-20

v0.3.11-fixes-0 - 2023-01-20

Merged

  • Permalink update and scaffold performance update #142
  • Flatmap, Simulation and Sidebar updates #140
  • Simulation-related changes required for M4.5.7 #134
  • Improve synchronisation with nerves #136

Commits

  • Updated package-lock.json. be20fa5
  • Use the latest version of SimulationVuer (0.6.4). 43fd6a2
  • Update to use the latest version of flatmap which includes work on legacy flatmap supports. cea2589

0.3.9 - 2022-12-02

v0.3.9-fixes-2 - 2022-12-13

Merged

  • Improve synchronisation with nerves #136
  • Colour change #135
  • Improve search function to display a dropdpwn autocomplete menu . #133
  • Bug fix for sidebar #132
  • Update map-side-bar for better context card banners #127

Commits

  • Update version. 952f86c
  • Improve sync map and performance. 557948d
  • Fix context card banner breaking, add markdown support 4e239ca

v0.3.8-fixes-0 - 2022-09-02

Merged

  • Bump terser from 4.8.0 to 4.8.1 #119
  • Fix where no context card was breaking scaffolds #126
  • Update flatmapvuer and set latest changes flag for different flatmaps. #125

Commits

  • Update scaffoldvuer and release version. 9cd0f5b
  • Remove window var de8fa90

0.3.7 - 2022-08-19

Merged

  • Jesses updates #124
  • Update a few dependencies #123
  • Fix root url being hardcoded on sidebar #122
  • Context source fix #121
  • Add a few missing markers #120

Commits

  • Update sidebar with context source fix 5278821
  • Update flatmapvuer and set latest changes flag for different flatmaps. 4eeea58
  • Fix issue where context 'view source' throws error 6bfd28d

v0.3.3 - 2022-07-29

Commits

  • Update package # 028f16c
  • Catch up with main 14d4bfd
  • Update from sidebar removing an unused file cbbebbf

v0.3.2 - 2022-07-22

Merged

  • Dynamic flatmap markers #102
  • Fix Search for dataset on upstream downstream not working. #9
  • Fix several minor issues. #8
  • Update e2e testing #118
  • Dynamic viewers #117

Commits

  • Update e2e-testing to have the bare minimum going. cb262ae
  • Update dependencies. 3907b05
  • Improve e2e testing. e27aef6

v0.3.1 - 2022-06-09

Merged

  • Synchronised map and gallery in sidebar #116
  • Use the latest version of the sidebar (1.2.3) and SimulationVuer (0.5.8) #113

Commits

  • Refactor ContentVuer to use dynamic components for each viewers. 4b20e5a
  • Use the latest beta verison of map sidebar. 64b9e5e
  • Remove unused fils. 682de09

v0.3.1-beta.0 - 2022-05-23

Commits

v0.3.0 - 2022-05-27

Merged

  • Synchronised map and gallery in sidebar #116
  • Use the latest version of the sidebar (1.2.3) and SimulationVuer (0.5.8) #113

Commits

v0.3.0-beta.7 - 2022-05-23

Commits

  • Use the latest beta verison of map sidebar. 64b9e5e

0.3.0-beta.6 - 2022-05-23

Merged

  • Use SimulationVuer v0.5.6 #112

Commits

  • Use the latest version (1.2.3) of the sidebar. 645ac00
  • Use the latest version of SimulationVuer (0.5.8). 395f07a
  • Update plotvuer. d1af114

v0.3.0-beta.5 - 2022-05-11

Commits

  • Add warning text when a search is not found. a13adff

v0.3.0-beta.4 - 2022-05-11

Merged

  • Allow sidebar to set the views of a scaffold #105
  • Use the latest version of SimulationVuer #109
  • Update version number #107
  • Update sidebar with the new 'Data type' filter and help popup #106
  • Use version 0.5.1 of SimulationVuer #103
  • Bump follow-redirects from 1.14.7 to 1.14.8 #97
  • Bump url-parse from 1.5.3 to 1.5.7 #98
  • Bump simple-get from 3.1.0 to 3.1.1 #94
  • Switch map-sidebar from using discoverids to dois #95

Commits

  • Update sidebar with context fixes, update mapintegratedvuer version # 373e52b
  • Use the latest version of SimulationVuer. cd53336
  • Added the jsonschema package. 0423cb8

v0.2.5 - 2022-02-09

Merged

  • Switch mapintegratedvuer to using algolia sidebar #91
  • Update to the latest version of abi-software/svgicon #93
  • Bump follow-redirects from 1.14.1 to 1.14.7 #90
  • Add cypress-vue component testing #89
  • Various bug fixes #88
  • Use the latest version of SimulationVuer #87

Commits

  • Cypress testing - replace json response with cypress fixture. dd4127f
  • Switch to Algolia version of the sidebar: 0173b8b
  • Tidy up for 0.2.5 release. a529cb8

v0.2.1 - 2021-08-25

Merged

  • Dynamic markers and latest flatmapvuer #86

Commits

  • Use the latest version of flatmapvuer. f961437
  • increment version number. 8fa0d7b
  • Fix a minor typo. 9d94803

v0.2 - 2021-08-25

Merged

  • Integrated features #85
  • Changes to SplitFlow.vue to support new tabbed sidebar #81
  • Split screen #80

Commits

  • Update package-lock. e0b7445
  • Update package verion. 8fd043d
  • Use the latest version of SimulationVuer. b230d45

v0.1.31 - 2021-06-01

v0.1.31-fix-1 - 2021-06-29

Merged

  • Release 0.1.31 #83
  • 0.1.30 hotfix #82

Commits

  • Uses latest modules and increment beta release version. 7d4b44c
  • Bump dependencies and version. f41e1ac
  • v0.1.31 release. 354a21e

0.1.30-hotfix-1 - 2021-05-05

Merged

  • Use external npm sidebar package #79
  • Add a check for if scicrunch organs is not an array #78
  • Add external dependency update info to readme #77
  • Make sure demo app has minimal default css in it. #76
  • Add border to the share link popup. #75
  • Update the .gitignore file. #74
  • Fix plot viewer having scrollbars #72
  • Bump version and dependencies. #73
  • Scaffold performance fix #71
  • Add the prop 'flatmapAPI' for setting the endpoint for flatmap server. #70
  • Unit tests #69
  • Removed unused file. #68
  • Get package for 0.1.28 release #67
  • Tehsurfer gazelle map control update with bug fixes #66
  • Switch scrollbar to 'thin' for firefox #65
  • Various minor cleaning ups #64
  • All changes to cascader now update labels #62
  • Gazelle sidebar design update #60
  • Permalink #58
  • Add scicrunch check #59
  • Fix a bug causing loading icon never appears. #7
  • Side bar drawer #55
  • Remove popup #6
  • Add plots to sidebar #5
  • Improve on the sidebar close button style. #4
  • Put the arrow outside of the siderbar. #3
  • Use vue-svg-inline-loader for svg to avoid problem later on. #2
  • Optimise build #57
  • Remove font-face url from css to prevent problem with scss/sass import. #56
  • Documentation #53
  • Add hover delay to dialog toolbar icons #47
  • Unit tests #46
  • Last minute bug fixes. #45
  • Switch onboarding tour #44
  • Version0.1.18 #43
  • Context help added to the site #42
  • Version0.1.17 #41
  • Fix resource hover jumping to next step of tutorial #40
  • Popup size and new cat icon #39
  • Hovered popups #38
  • Tooltip for buttons #37
  • Update text as per sonias feedback #36
  • Fix select box not showing in mac chrome fullscreen #35
  • Add pig as available species. #34
  • Update simulated data and improve multiflatmap rendering #33
  • Pretest improvement #32
  • Update plotvuer #31
  • Pretest improvement #30
  • Update text and add icons to tutorial #29
  • Bump version and display label on title of dialog, #28
  • Add ability to send fullscreen request without breaking toggling #27
  • Add id to flatmap popup for tutorial #24
  • Fix gene and sample labels being the wrong way around #25
  • Add number of improvements and bump version. #23
  • Tour updates #22
  • Pretest improvement #21
  • Added a dataset header component to link to datasets #9
  • Bump flatmap viewer version. #20
  • Remove unused event. #19
  • Added Documentation, increase padding and data display #10
  • Exit fullscreen on tutorial close #18
  • Various small changes. #17
  • Vue tour fixes #16
  • Onboarding tour added #15
  • Fullscreen control #14
  • Bump to use scaffoldvuer version to 0.1.23. #13
  • Dependency updates #12
  • Dependency updates #11
  • Zara navbar fixes #8
  • Floating dialog workflow #7
  • Nav dropdown fixes and plotvuer style fix #6
  • Floating dialog #5
  • Horizontal Nav dropdown added #4
  • Add heatmap to demo components #3
  • Nav bar added #2
  • Floating dialog #1

Commits

  • Use external npm sidebar package instead. a454854
  • Update dependencies. 5dded45
  • Updated package-lock.json file. 5c71bf5