diff --git a/docs/Data analysis with use cases/_category_.json b/docs/Data analysis with use cases/_category_.json deleted file mode 100644 index 8259e741..00000000 --- a/docs/Data analysis with use cases/_category_.json +++ /dev/null @@ -1,8 +0,0 @@ -{ - "label": "Data analysis with use cases", - "position": 7, - "link": { - "type": "generated-index", - "description": "Learn how to analyse the data you collected with ClimMob through several use cases." - } -} diff --git a/docs/Data analysis with use cases/uc1.md b/docs/Data analysis with use cases/uc1.md deleted file mode 100644 index c35fc647..00000000 --- a/docs/Data analysis with use cases/uc1.md +++ /dev/null @@ -1,7 +0,0 @@ ---- -sidebar_position: 1 ---- - -# Use Case 1 - -Presentation of Use case 1 diff --git a/docs/Data analysis with use cases/uc2.md b/docs/Data analysis with use cases/uc2.md deleted file mode 100644 index dc2eecd4..00000000 --- a/docs/Data analysis with use cases/uc2.md +++ /dev/null @@ -1,7 +0,0 @@ ---- -sidebar_position: 2 ---- - -# Use case 2 - -Presentation of use case 2 diff --git a/docs/appendices/_category_.json b/docs/appendices/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/appendices/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/case studies/_category_.json b/docs/case studies/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/case studies/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/case studies/bean_protocol.md b/docs/case studies/bean_protocol.md new file mode 100644 index 00000000..bca1a6b3 --- /dev/null +++ b/docs/case studies/bean_protocol.md @@ -0,0 +1,148 @@ +# Bean Trial Protocol + +**Authors** + +Abel Moges, Kidane Tumsa, Julius Mbiu, OneAcre Fund, Michael Kilango, +Nestory Shida, Stanley Nkalubo, Wilber Ssekandi, Sylvia Kalemera, +Fadhili Kasubiri, Teshale Mamo, Clare Mukankusi, Jean Claude Rubyogo, +Edith Kadege, Kaue de Souza, Rhys Manner + +## Introduction + +This document provides a standardised overview of the basic information +that will be collected during a bean tricot trial. Further traits and +variables can be added, but this will need to be done by the project +manager in ClimMob. + +The protocol provides an overview of the data collection moments during +the trials and the variables and traits collected at each data +collection moment. Farmers evaluate varieties in their on-farm trials +and provide comparative observations by ranking the varieties based on +their performance throughout their growth and post-harvest qualities +including taste and consumption preferences. + +A separate protocol for bean consumer analysis will be developed to +understand taste and preferences of non-tricot farmer consumers to +strengthen inclusive and informed breeding decisions. + +A more in-depth overview of the steps required for developing an on-farm +trial project using [tricot and ClimMob](https://climmob.net/) is +available here: + +## Data collection moments and traits to be collected + +Table 1 outlines the data collection moments, time intervals of data +collection and traits to be collected during the bean tricot trial. + +Table 1. Data collection moments and traits + +| Data collection moments | Interval (after planting) days | OFT/HH Characterization | Traits | +|--------------------------|----------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|------------------------------------------------------------------------------------------------------------------------------------------------------| +| Farmer registration | At package distribution | Informed consent
Farmer name
Package code
Point of delivery
Age
Sex
Education level
Civil status
ADM 1
ADM 2
ADM 3
Telephone primary
Telephone secondary
Experience with the crop
Experience with the crop years
Experience with tricot
Experience with tricot times | | +| Agronomic Performance | 15 | Assessment date
On time
Planting date
Trial GPS
Trial site Vs main
Previous land use
Mode of land preparation
Slope
Shade
Planting density main
Planting method
Plant population
Plant distance
Plant distance unit
Row distance
Row distance unit
Number of rows
Local variety
Intercropping
Intercropped with
Basal fertilizer
Basal fertilizer quantity
Plot loss
Plot loss reason
Diseases any
Diseases severity | Germination rate
Tolerance to Pests
Tolerance to Diseases
Tolerance to a biotic stress | +| Maturity | 40 | Assessment date
Plant population
Plot loss
Plot loss reason
Diseases any
Diseases severity
Irrigation
Top dressing
Top dressing quantity
Pesticide use
Pesticide frequency
Herbicide use
Herbicide frequency | Tolerance to diseases
Tolerance to pests
Tolerance to abiotic stress
Leaf quality | +| Harvest | 60-90 | Assessment date
Harvesting date
Plot loss
Plot loss reason
Plant population
Management
Management prioritized
Management why
Yield quantitative
Yield quantitative unit | Maturity
Yield qualitative tricot
Marketability
Seed size
Leaf quality for consumption | +| Post-harvest | 90-150 | Assessment date
Type of storage
Storage problems specification
Storage duration
Sales
Crop drying
Crop drying duration
Leaves used
Best why
Worst why
Grow again | Tolerance to storage problems
Storability
Marketability
Taste
Overall performance
Comparison with local | +| Socio-economic survey | Anytime | RHoMIS developed separately | | + +## Household and trial characterisation questions + +Table 2 contains questions that will be asked on household and trial characteristics to complement tricot questions + +Table 2. Household/ trial characterisation +| Variable | Question | Type | Options | +|-----------------------------------|-----------------------------------------------------------------------------------------------------------------------------------------------------------|-----------------------------------|----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| +| Informed consent | Do you willingly accept to host tricot trial and provide required information from the trial that can be used for research and publication purposes? | yes/no | | +| Farmer name | What is the farmer’s name? | Text | | +| Package code | | QR Code | | +| Point of delivery | Take the GPS coordinates of the point of delivery | GPS | | +| Age | What is the age of the owner and manager of the trial? | Integer | | +| Sex | Gender of the owner and manager of the trial | Select one | Male
Female
Rather not say | +| Education level | What is the education level of the manager of the trial? | Select one | No formal education
Primary
Secondary
University | +| Civil status | What is the marital status of the manager of the trial? | Select one | Single
Married/living with a partner
Widowed
Other specify | +| ADM 1 | What is the administrative level 1 location of the trial? | Select one | List of participating administrative level 1 units. | +| ADM 2 | What is the administrative level 2 location of the trial? | Select one | List of participating administrative level 2 units. | +| ADM 3 | What is the administrative level 3 location of the trial? | Select one | List of participating administrative level 3 units. | +| Telephone primary | What is the farmer’s primary telephone number? | Integer | | +| Telephone secondary | What is the farmer’s secondary telephone number? | Integer | | +| Experience with the crop | Have you cultivated this crop before? | Yes/No | | +| Experience with the crop years | If yes, for how many years have you been cultivating it? | Integer | | +| Experience with tricot | Have you participated in a tricot trial before? | Yes/No | | +| Experience with tricot times | If yes, how many times? Zero if first time. | Integer | | +| Assessment date | On which date did you do the assessment of your trial plot? | Date | | +| On time | Was your trial package delivered on time? | Choose one | Too early – package delivered early 1-3 days
Early enough for timely planting
Too late - planting delayed 1-3 days
Too late - planting delayed 4-9 days
Too late - planting delayed 10-20 days
Too late - planting delayed 21 days or more
Other | +| Planting date | On which date did you plant the tubers? | Date | | +| Trial GPS | Take GPS using ODK | GPS | | +| Trial site Vs main | Are any of these options different between your trial plot and your main field? | Choose multiple | Soil
Slope
Shading effect
Other
none | +| Previous land use | What was the previous land use of the on-farm plot site? | Text | | +| Mode of land preparation | How did you prepare the land of the trial plot? | Choose one | Tractor
Hand hoes
Animals
No land preparation
Other | +| Slope | What is the slope of the area you established your tricot trial? | Select one | Flat
Slight
Strong | +| Shade | Is the area you have established your tricot trial affected by shade? | Select one | No
Yes, partial
Yes, total | +| Planting density main | Is the planting density of the trial plots the same as on your main plot? | Select one | Higher
About the same
Lower | +| Planting method | How were the plants planted? | Choose one | Broadcast
Rows
Other (text) | +| Plant population | How many plants survived for each variety? | Integer (tricot-complex) | Count A
Count B
Count C | +| Plant distance | How much space did you leave between plants? | Integer | | +| Plant distance unit | Please select the unit of measure | Select one | Centimeters
Meters
Feet
Inches
Other | +| Row distance | How much space did you leave between rows? | Integer | | +| Row distance unit | Please select the unit of measure | Select one | Centimeters
Meters
Feet
Inches
Other | +| Number of rows | How many rows did you plant for each variety? | Integer (detailed) | Count A
Count B
Count C | +| Local variety | What is the name of your best local variety you usually grow? | Text | | +| Intercropping | Have you intercropped in your trial? | Choose one | Yes
No | +| Intercropped with | If yes, with which crop did you intercrop? | Text | | +| Basal fertilizer | Type of basal fertilizer used in the trial plot? | Choose multiple | NPK
DAP
Other, specify (text)
None | +| Basal fertilizer quantity | If any basal fertilizer was used, how much did you use in the trial plot in kilograms? | Integer | | +| Plot loss | Did you lose any of your trial plots? If yes, which one? | Choose multiple | A
B
C
None | +| Plot loss reason | What was the reason for you losing variety \{\$Plot loss\}? | Text | | +| Diseases any | Did you find any disease in the trial? | Choose one | Yes
No | +| Diseases severity | How severe was the impact? | Select one expanded (per plot) | Very severe (\>75% of plot affected)
Moderate (25%-75% of plot affected)
Minor (\<25% of plot affected) | +| Irrigation | Did you use an irrigation system on your plots? | Select one | Yes
No | +| Top dressing | Which type of top dressing was used in the trial? | Choose multiple | Urea
Manure
NPK
CAN
Other | +| Top dressing quantity | If any top dressing was used, how much did you use in the trial (kg)? | Integer | | +| Pesticide use | Did you use pesticides on your plots? | Select one | Yes
No | +| Pesticide frequency | If yes, how many times did you apply pesticide? | Integer | | +| Herbicide use | Did you use herbicides on your plots? | Select one | Yes
No | +| Herbicide frequency | If yes, how many times did you apply herbicide? | Integer | | +| Harvesting date | When did you harvest your trial? | Date | | +| Management | Were any of these management practices different between your trial plot and the main field? | Choose multiple | None
Fertilizer
Pesticide
Irrigation
Planting date
Other | +| Management prioritized | If different management strategies were used, which one did you prioritize? | Choose one | Main field
Trial plot
Treated equally | +| Management why | If different management strategies were used, why did you treat the main field and your trial plot differently? | Text | | +| Yield quantitative | What was the yield for each variety? | Integer (tricot complex) | Measure for A
Measure for B
Measure for C | +| Yield quantitative unit | What was the unit of measure for yield? | Select one | Kilograms
Grams
Standard unit of measure (jug, bowl)
Other | +| Best why | Why did you rank this variety as the best? | Text | | +| Worst why | Why did you rank this variety as the worst? | Text | | +| Grow again | If planting material were available for all three varieties, which variety(ies) would you like to grow in the next season? | Multiple | A
B
C
None | +| Storage problems specification | Did you experience any of the following problems during storage? | Choose multiple | Rodents
Mold
Insects
None | +| Type of storage | How did you store your grains? | Select one | Sacks
Iron drum
Traditional setup
Other | +| Storage duration | For how many days after harvest did you store? | Integer | | +| Sales | Do you plan to sell any grains from the trial? | Select one | Yes
No | +| Crop drying | How did you dry your crop? | Select one | Under the sun
Individual drier
Communal drier
Didn’t dry
Other | +| Crop drying duration | For how long did you dry your crop (in days)? | Integer | | +| Leaves used | Are the leaves of the crop used for anything? | Select multiple | Human consumption
Fodder for animals
Left on the ground for mulch
Not used | + + + +## Tricot questions to assess crop genotypes + +Table 3 outlines tricot questions that are asked to the experimenting farmer to capture comparative rankings of crop genotypes. + +Table 3: Tricot questions for variety ranking + +| Trait | Statement (positive/best) | Statement (negative/worst) | +|-----------------------------------------|-------------------------------------------------------------------------------------------|--------------------------------------------------------------------------------------| +| Germination Time | Which variety has the earliest germination? | Which variety has the latest germination? | +| Germination Rate | Which variety germinated the most plants? | Which variety germinated the fewest plants? | +| Disease tolerance | Which variety is most tolerant to diseases? | Which variety is least tolerant to diseases? | +| Pest tolerance | Which variety is most tolerant to pests? | Which variety is least tolerant to pests? | +| Abiotic stress tolerance | Which variety is most tolerant to abiotic stress (drought, flooding, salty soil, etc.)? | Which variety is least tolerant to abiotic stress (drought, flooding, salty soil)? | +| Leaf quality at harvest for consumption | Which variety has better quality leaves for human consumption? | Which variety has worst quality leaves for human consumption? | +| Maturity | Which variety matures earliest? | Which variety matures latest? | +| Yield tricot | Which variety has the highest yield? | Which variety has the lowest yield? | +| Seed size | Which variety has the largest seeds? | Which variety has the smallest seeds? | +| Seed size for target use | Which variety has the best seed size for the target use/market? | Which variety has the worst seed size for the target use/market? | +| Taste | Which variety has the best taste? | Which variety has the worst taste? | +| Marketability | Which variety is the most marketable? | Which variety is least marketable? | +| Overall preference | Overall, which variety has the best performance? | Overall, which variety has the worst performance? | +| Comparison with local | Which variety is better than the best variety that you usually grow? | Which variety is worse than the best variety that you usually grow? | +| Storage problems | Which variety is more tolerant to storage problems? | Which variety is more susceptible to storage problems? | +| Storability | Which variety stores the best/stays best after storage? | Which variety stores the worst/spoils most after storage? | + diff --git a/docs/challenges solutions/_category_.json b/docs/challenges solutions/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/challenges solutions/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/data analysis/_category_.json b/docs/data analysis/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/data analysis/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/data management/_category_.json b/docs/data management/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/data management/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/experimental design/_category_.json b/docs/experimental design/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/experimental design/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/feedback dissemination/_category_.json b/docs/feedback dissemination/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/feedback dissemination/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/implementation/_category_.json b/docs/implementation/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/implementation/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +} diff --git a/docs/Tricot/_category_.json b/docs/introduction to tricot/_category_.json similarity index 100% rename from docs/Tricot/_category_.json rename to docs/introduction to tricot/_category_.json diff --git a/docs/Tricot/doc/tricot.pdf b/docs/introduction to tricot/doc/tricot.pdf similarity index 100% rename from docs/Tricot/doc/tricot.pdf rename to docs/introduction to tricot/doc/tricot.pdf diff --git a/docs/Tricot/img/10StepsTricot.png b/docs/introduction to tricot/img/10StepsTricot.png similarity index 100% rename from docs/Tricot/img/10StepsTricot.png rename to docs/introduction to tricot/img/10StepsTricot.png diff --git a/docs/Tricot/introduction.md b/docs/introduction to tricot/introduction.md similarity index 100% rename from docs/Tricot/introduction.md rename to docs/introduction to tricot/introduction.md diff --git a/docs/Tricot/steps.md b/docs/introduction to tricot/steps.md similarity index 100% rename from docs/Tricot/steps.md rename to docs/introduction to tricot/steps.md diff --git a/docs/planning/_category_.json b/docs/planning/_category_.json new file mode 100644 index 00000000..3185587c --- /dev/null +++ b/docs/planning/_category_.json @@ -0,0 +1,8 @@ +{ + "label": "Trials protocols", + "position": 5, + "link": { + "type": "generated-index", + "description": "Find the crop protocols you need. A crop protocol provides a standardised overview of the basic information that will be collected during a crop tricot trial. The protocol provides an overview of the data collection moments during the trials and the variables and traits collected at each data collection moment. Farmers evaluate varieties in their on-farm trials and provide comparative observations by ranking the varieties based on their performance throughout their growth and post-harvest qualities including taste and consumption preferences." + } +}