diff --git a/README.md b/README.md index a18d816..a680d5d 100755 --- a/README.md +++ b/README.md @@ -5,7 +5,7 @@ An R wrapper for running the SigProfilerPlotting framework. **INTRODUCTION** -The purpose of this document is to provide a guide for using the SigProfilerPlotting framework and associated functions/tools to visualize the output from SigProfilerExtraction and SigProfilerSimulator. An extensive Wiki page detailing the usage of this tool can be found at https://osf.io/2aj6t/wiki/home. For users that prefer working in a Python environment, the tool is written in Python and can be found and installed from: +The purpose of this document is to provide a guide for using the SigProfilerPlotting framework and associated functions/tools to visualize the output from SigProfilerExtraction and SigProfilerSimulator. An extensive Wiki page detailing the usage of this tool can be found at https://osf.io/2aj6t/wiki/home. For users that prefer working in a Python environment, the tool is written in Python and can be found and installed from: https://github.com/AlexandrovLab/SigProfilerPlotting **PREREQUISITES** @@ -77,11 +77,12 @@ To create a sample portrait, ensure that you have a matrix for all required cont **CITATION** -E.N. Bergstrom, M.N. Huang, U. Mahto, M. Barnes, M.R. Stratton, S.G. Rozen, and L.B. Alexandrov (2019) SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. https://www.biorxiv.org/content/10.1101/653097v1 +Bergstrom EN, Huang MN, Mahto U, Barnes M, Stratton MR, Rozen SG, Alexandrov LB: SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events. BMC Genomics 2019, 20:685 +https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-6041-2 **COPYRIGHT** -Copyright (c) 2019, Erik Bergstrom [Alexandrov Lab] All rights reserved. +Copyright (c) 2020, Erik Bergstrom [Alexandrov Lab] All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: