From 61d58d2ddbf42f24569f53fd55838f4291a47b00 Mon Sep 17 00:00:00 2001 From: pgarrison Date: Fri, 30 Aug 2024 00:51:55 +0000 Subject: [PATCH] Updating lock files and requirements --- requirements/linux/all-requirements.txt | 304 +- requirements/linux/docs-requirements.txt | 291 +- requirements/linux/equiv-requirements.txt | 280 +- requirements/linux/pdm.lock | 3274 ++++++++++++---- requirements/linux/requirements.txt | 291 +- requirements/linux/spharm-requirements.txt | 284 +- requirements/linux/test-requirements.txt | 285 +- .../linux/torchserve-requirements.txt | 279 +- requirements/macos/all-requirements.txt | 290 +- requirements/macos/docs-requirements.txt | 276 +- requirements/macos/equiv-requirements.txt | 265 +- requirements/macos/pdm.lock | 3434 ++++++++++++---- requirements/macos/requirements.txt | 276 +- requirements/macos/spharm-requirements.txt | 269 +- requirements/macos/test-requirements.txt | 270 +- .../macos/torchserve-requirements.txt | 265 +- requirements/windows/all-requirements.txt | 294 +- requirements/windows/docs-requirements.txt | 281 +- requirements/windows/equiv-requirements.txt | 270 +- requirements/windows/pdm.lock | 3447 +++++++++++++---- requirements/windows/requirements.txt | 281 +- requirements/windows/spharm-requirements.txt | 274 +- requirements/windows/test-requirements.txt | 275 +- .../windows/torchserve-requirements.txt | 270 +- 24 files changed, 10863 insertions(+), 5162 deletions(-) diff --git a/requirements/linux/all-requirements.txt b/requirements/linux/all-requirements.txt index fb839d7a1..2a2e1489c 100644 --- a/requirements/linux/all-requirements.txt +++ b/requirements/linux/all-requirements.txt @@ -1,229 +1,241 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -Deprecated==1.2.14 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 -humanize==4.9.0 +humanize==4.10.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 nibabel==5.2.1 -Ninja==1.11.1.1 +ninja==1.11.1.1 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 point-cloud-utils==0.30.4 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 pyntcloud==0.3.1 -pyparsing==3.1.2 -pyperclip==1.8.2 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 shellingham==1.5.4 -SimpleITK==2.3.1 +simpleitk==2.4.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.5.2 -torchio==0.19.6 -torchmetrics==1.3.2 -torchserve==0.10.0 +torch-geometric==2.5.3 +torchio==0.19.9 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -typer==0.9.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typer==0.12.5 +typer[all]==0.12.5 +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/docs-requirements.txt b/requirements/linux/docs-requirements.txt index 30c7d34d0..8430db0fa 100644 --- a/requirements/linux/docs-requirements.txt +++ b/requirements/linux/docs-requirements.txt @@ -1,215 +1,230 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alabaster==0.7.13 -alembic==1.13.1 +alabaster==0.7.16 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -babel==2.14.0 -backoff==2.2.1 +babel==2.16.0 beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 docutils==0.19 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 furo==2023.3.23 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 imagesize==1.4.1 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 m2r2==0.3.3.post2 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 snowballstemmer==2.2.0 sortedcontainers==2.4.0 -soupsieve==2.5 +soupsieve==2.6 sphinx==6.1.3 sphinx-basic-ng==1.0.0b2 -sphinxcontrib-applehelp==1.0.4 -sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-htmlhelp==2.0.1 +sphinxcontrib-applehelp==2.0.0 +sphinxcontrib-devhelp==2.0.0 +sphinxcontrib-htmlhelp==2.1.0 sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==1.0.3 -sphinxcontrib-serializinghtml==1.1.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sphinxcontrib-qthelp==2.0.0 +sphinxcontrib-serializinghtml==2.0.0 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/equiv-requirements.txt b/requirements/linux/equiv-requirements.txt index eefe9c738..4bee082d0 100644 --- a/requirements/linux/equiv-requirements.txt +++ b/requirements/linux/equiv-requirements.txt @@ -1,208 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/pdm.lock b/requirements/linux/pdm.lock index f48f6018f..408343158 100644 --- a/requirements/linux/pdm.lock +++ b/requirements/linux/pdm.lock @@ -3,48 +3,80 @@ [metadata] groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", "torchserve"] -cross_platform = false -static_urls = false -lock_version = "4.3" -content_hash = "sha256:3e6a5a3229dd4eaabe5c77a3a0338336bcbdbb9c2e94480ef3ff64837349a598" +strategy = ["inherit_metadata"] +lock_version = "4.5.0" +content_hash = "sha256:a6ff8bb0ccd12bec0ba797b39bd377580fd66edd22e2e0fb1e2e233f08432037" + +[[metadata.targets]] 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cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 -fasteners==0.19 -filelock==3.13.1 +exceptiongroup==1.2.2; python_version < "3.11" +fasteners==0.19; sys_platform != "emscripten" +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 -fsspec==2024.3.1 +fsspec==2024.6.1 +fsspec[http]==2024.6.1 +fsspec[s3]==2024.6.1 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 -huggingface-hub==0.21.4 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 +huggingface-hub==0.24.6 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.26.4 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.1 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 -scipy==1.10.1 -setuptools==69.2.0 +s3transfer==0.10.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 +scipy==1.13.1 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2024.8.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==2.2.1 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0; platform_system == "Linux" and platform_machine == "x86_64" wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.17.2 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/spharm-requirements.txt b/requirements/linux/spharm-requirements.txt index 45a9a6bc0..d0cd1fb79 100644 --- a/requirements/linux/spharm-requirements.txt +++ b/requirements/linux/spharm-requirements.txt @@ -1,205 +1,219 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/test-requirements.txt b/requirements/linux/test-requirements.txt index 17844495d..2b40000f2 100644 --- a/requirements/linux/test-requirements.txt +++ b/requirements/linux/test-requirements.txt @@ -1,205 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -coverage==7.4.4 -croniter==1.4.1 +contourpy==1.3.0 +coverage==7.6.1 +coverage[toml]==7.6.1 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" iniconfig==2.0.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -pluggy==1.4.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pluggy==1.5.0 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pytest==7.4.4 pytest-cov==4.1.0 +pytest-cov[toml]==4.1.0 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 -tomli==2.0.1 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 +tomli==2.0.1; python_version < "3.11" toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/linux/torchserve-requirements.txt b/requirements/linux/torchserve-requirements.txt index dcb8b1f93..ceed7f400 100644 --- a/requirements/linux/torchserve-requirements.txt +++ b/requirements/linux/torchserve-requirements.txt @@ -1,201 +1,214 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 -cmake==3.28.4 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 -lit==18.1.2 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -nvidia-cublas-cu11==11.10.3.66 -nvidia-cuda-cupti-cu11==11.7.101 -nvidia-cuda-nvrtc-cu11==11.7.99 -nvidia-cuda-runtime-cu11==11.7.99 -nvidia-cudnn-cu11==8.5.0.96 -nvidia-cufft-cu11==10.9.0.58 -nvidia-curand-cu11==10.2.10.91 -nvidia-cusolver-cu11==11.4.0.1 -nvidia-cusparse-cu11==11.7.4.91 -nvidia-nccl-cu11==2.14.3 -nvidia-nvtx-cu11==11.7.91 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 -torchserve==0.10.0 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -triton==2.0.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/all-requirements.txt b/requirements/macos/all-requirements.txt index c91d224d8..2a2e1489c 100644 --- a/requirements/macos/all-requirements.txt +++ b/requirements/macos/all-requirements.txt @@ -1,215 +1,241 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -Deprecated==1.2.14 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 -humanize==4.9.0 +humanize==4.10.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 nibabel==5.2.1 -Ninja==1.11.1.1 +ninja==1.11.1.1 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 point-cloud-utils==0.30.4 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 pyntcloud==0.3.1 -pyparsing==3.1.2 -pyperclip==1.8.2 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 shellingham==1.5.4 -SimpleITK==2.3.1 +simpleitk==2.4.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.5.2 -torchio==0.19.6 -torchmetrics==1.3.2 -torchserve==0.10.0 +torch-geometric==2.5.3 +torchio==0.19.9 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -typer==0.9.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typer==0.12.5 +typer[all]==0.12.5 +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/docs-requirements.txt b/requirements/macos/docs-requirements.txt index 156c1a932..8430db0fa 100644 --- a/requirements/macos/docs-requirements.txt +++ b/requirements/macos/docs-requirements.txt @@ -1,200 +1,230 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alabaster==0.7.13 -alembic==1.13.1 +alabaster==0.7.16 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -babel==2.14.0 -backoff==2.2.1 +babel==2.16.0 beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 docutils==0.19 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 furo==2023.3.23 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 imagesize==1.4.1 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 m2r2==0.3.3.post2 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 snowballstemmer==2.2.0 sortedcontainers==2.4.0 -soupsieve==2.5 +soupsieve==2.6 sphinx==6.1.3 sphinx-basic-ng==1.0.0b2 -sphinxcontrib-applehelp==1.0.4 -sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-htmlhelp==2.0.1 +sphinxcontrib-applehelp==2.0.0 +sphinxcontrib-devhelp==2.0.0 +sphinxcontrib-htmlhelp==2.1.0 sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==1.0.3 -sphinxcontrib-serializinghtml==1.1.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sphinxcontrib-qthelp==2.0.0 +sphinxcontrib-serializinghtml==2.0.0 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/equiv-requirements.txt b/requirements/macos/equiv-requirements.txt index 41f62fc37..4bee082d0 100644 --- a/requirements/macos/equiv-requirements.txt +++ b/requirements/macos/equiv-requirements.txt @@ -1,193 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 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pathlib-compatible object wrapper for zip files" +groups = ["default", "all", "docs", "pcloud", "spharm"] files = [ - {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"}, - {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"}, + {file = "zipp-3.20.1-py3-none-any.whl", hash = "sha256:9960cd8967c8f85a56f920d5d507274e74f9ff813a0ab8889a5b5be2daf44064"}, + {file = "zipp-3.20.1.tar.gz", hash = "sha256:c22b14cc4763c5a5b04134207736c107db42e9d3ef2d9779d465f5f1bcba572b"}, ] diff --git a/requirements/macos/requirements.txt b/requirements/macos/requirements.txt index f442218dd..190b5e422 100644 --- a/requirements/macos/requirements.txt +++ b/requirements/macos/requirements.txt @@ -1,182 +1,210 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 -aiohttp==3.9.3 +aicspylibczi==3.2.0 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 -boto3==1.34.68 -botocore==1.34.68 -certifi==2024.2.2 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 +boto3==1.35.9 +botocore==1.35.9 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; platform_system == "Windows" or sys_platform == "win32" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 -fasteners==0.19 -filelock==3.13.1 +exceptiongroup==1.2.2; python_version < "3.11" +fasteners==0.19; sys_platform != "emscripten" +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 -fsspec==2024.3.1 +fsspec==2024.6.1 +fsspec[http]==2024.6.1 +fsspec[s3]==2024.6.1 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 -huggingface-hub==0.21.4 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 +huggingface-hub==0.24.6 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.26.4 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.1 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 -scipy==1.10.1 -setuptools==69.2.0 +s3transfer==0.10.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 +scipy==1.13.1 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2024.8.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==2.2.1 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0; platform_system == "Linux" and platform_machine == "x86_64" wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.17.2 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/spharm-requirements.txt b/requirements/macos/spharm-requirements.txt index 27443a989..d0cd1fb79 100644 --- a/requirements/macos/spharm-requirements.txt +++ b/requirements/macos/spharm-requirements.txt @@ -1,190 +1,219 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/test-requirements.txt b/requirements/macos/test-requirements.txt index 8a244ef82..2b40000f2 100644 --- a/requirements/macos/test-requirements.txt +++ b/requirements/macos/test-requirements.txt @@ -1,190 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -coverage==7.4.4 -croniter==1.4.1 +contourpy==1.3.0 +coverage==7.6.1 +coverage[toml]==7.6.1 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" iniconfig==2.0.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -pluggy==1.4.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pluggy==1.5.0 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pytest==7.4.4 pytest-cov==4.1.0 +pytest-cov[toml]==4.1.0 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 -tomli==2.0.1 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 +tomli==2.0.1; python_version < "3.11" toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/macos/torchserve-requirements.txt b/requirements/macos/torchserve-requirements.txt index 23c6904bf..ceed7f400 100644 --- a/requirements/macos/torchserve-requirements.txt +++ b/requirements/macos/torchserve-requirements.txt @@ -1,187 +1,214 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -gunicorn==21.2.0 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 -torchserve==0.10.0 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/all-requirements.txt b/requirements/windows/all-requirements.txt index 09c99e800..2a2e1489c 100644 --- a/requirements/windows/all-requirements.txt +++ b/requirements/windows/all-requirements.txt @@ -1,219 +1,241 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -Deprecated==1.2.14 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 geomloss==0.2.6 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 -humanize==4.9.0 +humanize==4.10.0 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 nibabel==5.2.1 -Ninja==1.11.1.1 +ninja==1.11.1.1 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 point-cloud-utils==0.30.4 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 pyntcloud==0.3.1 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 shellingham==1.5.4 -SimpleITK==2.3.1 +simpleitk==2.4.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torch-geometric==2.5.2 -torchio==0.19.6 -torchmetrics==1.3.2 -torchserve==0.10.0 +torch-geometric==2.5.3 +torchio==0.19.9 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -typer==0.9.0 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typer==0.12.5 +typer[all]==0.12.5 +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/docs-requirements.txt b/requirements/windows/docs-requirements.txt index 6f556c619..8430db0fa 100644 --- a/requirements/windows/docs-requirements.txt +++ b/requirements/windows/docs-requirements.txt @@ -1,205 +1,230 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alabaster==0.7.13 -alembic==1.13.1 +alabaster==0.7.16 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -babel==2.14.0 -backoff==2.2.1 +babel==2.16.0 beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 docutils==0.19 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 furo==2023.3.23 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 imagesize==1.4.1 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 m2r2==0.3.3.post2 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 mistune==0.8.4 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 snowballstemmer==2.2.0 sortedcontainers==2.4.0 -soupsieve==2.5 +soupsieve==2.6 sphinx==6.1.3 sphinx-basic-ng==1.0.0b2 -sphinxcontrib-applehelp==1.0.4 -sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-htmlhelp==2.0.1 +sphinxcontrib-applehelp==2.0.0 +sphinxcontrib-devhelp==2.0.0 +sphinxcontrib-htmlhelp==2.1.0 sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==1.0.3 -sphinxcontrib-serializinghtml==1.1.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sphinxcontrib-qthelp==2.0.0 +sphinxcontrib-serializinghtml==2.0.0 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/equiv-requirements.txt b/requirements/windows/equiv-requirements.txt index 4c145cdf2..4bee082d0 100644 --- a/requirements/windows/equiv-requirements.txt +++ b/requirements/windows/equiv-requirements.txt @@ -1,198 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 -autograd==1.6.2 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 +autograd==1.7.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 e3nn==0.5.1 -edt==2.4.0 -einops==0.7.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 escnn==1.0.11 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 -future==1.0.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 +lazy-loader==0.4 lie-learn==0.0.1.post1 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 opt-einsum==3.3.0 opt-einsum-fx==0.1.4 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 py3nj==0.1.2 -pyarrow==10.0.1 -pydantic==2.1.1 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 pymanopt==2.2.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/pdm.lock b/requirements/windows/pdm.lock index 1ddb26976..408343158 100644 --- a/requirements/windows/pdm.lock +++ b/requirements/windows/pdm.lock @@ -3,48 +3,80 @@ [metadata] groups = ["default", "all", "docs", "equiv", "pcloud", "s3", "spharm", "test", "torchserve"] -cross_platform = false -static_urls = false -lock_version = "4.3" -content_hash = "sha256:3e6a5a3229dd4eaabe5c77a3a0338336bcbdbb9c2e94480ef3ff64837349a598" +strategy = ["inherit_metadata"] +lock_version = "4.5.0" +content_hash = 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-croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 -fasteners==0.19 -filelock==3.13.1 +exceptiongroup==1.2.2; python_version < "3.11" +fasteners==0.19; sys_platform != "emscripten" +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 -fsspec==2024.3.1 +fsspec==2024.6.1 +fsspec[http]==2024.6.1 +fsspec[s3]==2024.6.1 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 -huggingface-hub==0.21.4 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 +huggingface-hub==0.24.6 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.26.4 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==0.4.2 -s3transfer==0.10.1 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 -scipy==1.10.1 -setuptools==69.2.0 +s3transfer==0.10.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 +scipy==1.13.1 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2024.8.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==2.2.1 -uvicorn==0.29.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0; platform_system == "Linux" and platform_machine == "x86_64" wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.17.2 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/spharm-requirements.txt b/requirements/windows/spharm-requirements.txt index 10e1c72b2..d0cd1fb79 100644 --- a/requirements/windows/spharm-requirements.txt +++ b/requirements/windows/spharm-requirements.txt @@ -1,195 +1,219 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicscytoparam==0.1.10 -aicsimageio==4.11.0 +aicscytoparam==0.1.12 +aicsimageio==4.14.0 +aicspylibczi==3.2.0 aicsshparam==0.1.7 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -platformdirs==4.2.0 -pooch==1.8.1 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pooch==1.8.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pyshtools==4.10.3 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 +requests==2.32.3 resource-backed-dask-array==0.1.0 -rich==13.7.1 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -vtk==9.3.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +vtk==9.3.1 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/test-requirements.txt b/requirements/windows/test-requirements.txt index 18141ac77..2b40000f2 100644 --- a/requirements/windows/test-requirements.txt +++ b/requirements/windows/test-requirements.txt @@ -1,195 +1,220 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -coverage==7.4.4 -croniter==1.4.1 +contourpy==1.3.0 +coverage==7.6.1 +coverage[toml]==7.6.1 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" iniconfig==2.0.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -pluggy==1.4.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +pluggy==1.5.0 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 pytest==7.4.4 pytest-cov==4.1.0 +pytest-cov[toml]==4.1.0 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 -tomli==2.0.1 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 +tomli==2.0.1; python_version < "3.11" toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 +torchmetrics==1.4.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1 diff --git a/requirements/windows/torchserve-requirements.txt b/requirements/windows/torchserve-requirements.txt index 5cc777d3a..ceed7f400 100644 --- a/requirements/windows/torchserve-requirements.txt +++ b/requirements/windows/torchserve-requirements.txt @@ -1,192 +1,214 @@ # This file is @generated by PDM. # Please do not edit it manually. -aicsimageio==4.11.0 +aicspylibczi==3.2.0 aiobotocore==2.4.2 -aiohttp==3.9.3 +aiohappyeyeballs==2.4.0 +aiohttp==3.10.5 aioitertools==0.11.0 aiosignal==1.3.1 -alembic==1.13.1 +alembic==1.13.2 aniso8601==9.0.1 -anndata==0.9.2 -annotated-types==0.6.0 -ansicon==1.89.0 +anndata==0.10.9 +annotated-types==0.7.0 antlr4-python3-runtime==4.9.3 -anyio==4.3.0 -arrow==1.3.0 +array-api-compat==1.8 asciitree==0.3.3 -astropy==5.2.2 -async-timeout==4.0.3 -attrs==23.2.0 +astropy==6.0.1 +astropy-iers-data==0.2024.8.27.10.28.29 +async-timeout==4.0.3; python_version < "3.11" +attrs==24.2.0 autopage==0.5.2 -backoff==2.2.1 -beautifulsoup4==4.12.3 -bfio==2.3.0 -blessed==1.20.0 -blinker==1.7.0 +bioio==1.1.0 +bioio-base==1.0.4 +bioio-czi==1.0.1 +bioio-ome-tiff==1.0.0 +bioio-tifffile==1.0.0 +blinker==1.8.2 boto3==1.24.4 botocore==1.27.59 -certifi==2024.2.2 +cachetools==5.5.0 +certifi==2024.7.4 charset-normalizer==3.3.2 click==8.1.7 -cliff==4.6.0 +cliff==4.7.0 cloudpickle==3.0.0 -cmaes==0.10.0 +cmaes==0.11.1 +cmake==3.30.2; platform_system == "Linux" and platform_machine == "x86_64" cmd2==2.4.3 -colorama==0.4.6 +colorama==0.4.6; sys_platform == "win32" or platform_system == "Windows" colorlog==6.8.2 -contourpy==1.1.1 -croniter==1.4.1 +contourpy==1.3.0 cycler==0.12.1 -dask==2023.5.0 -dateutils==0.6.12 -deepdiff==6.7.1 -distributed==2023.5.0 -docker==7.0.0 -edt==2.4.0 -einops==0.7.0 +dask==2024.8.0 +dask[array,distributed]==2024.8.0 +dask[array]==2024.8.0 +databricks-sdk==0.31.1 +deprecated==1.2.14 +distributed==2024.8.0 +docker==7.1.0 +edt==2.4.1 +einops==0.8.0 elementpath==4.4.0 entrypoints==0.4 -exceptiongroup==1.2.0 -fastapi==0.110.0 +exceptiongroup==1.2.2; python_version < "3.11" fasteners==0.19 -filelock==3.13.1 +filelock==3.15.4 fire==0.6.0 -Flask==3.0.2 -fonttools==4.50.0 +flask==3.0.3 +fonttools==4.53.1 frozenlist==1.4.1 fsspec==2023.3.0 +fsspec[http]==2023.3.0 +fsspec[s3]==2023.3.0 gitdb==4.0.11 -gitpython==3.1.42 +gitpython==3.1.43 +google-auth==2.34.0 gorilla==0.4.0 graphene==3.3 graphql-core==3.2.3 graphql-relay==3.2.0 -greenlet==3.0.3 -h11==0.14.0 -h5py==3.10.0 +greenlet==3.0.3; (platform_machine == "win32" or platform_machine == "WIN32" or platform_machine == "AMD64" or platform_machine == "amd64" or platform_machine == "x86_64" or platform_machine == "ppc64le" or platform_machine == "aarch64") and python_version < "3.13" +gunicorn==22.0.0; platform_system != "Windows" +h5py==3.11.0 huggingface-hub==0.17.3 hydra-colorlog==1.2.0 hydra-core==1.3.2 hydra-optuna-sweeper==1.2.0 -idna==3.6 -imagecodecs==2023.3.16 -imageio==2.34.0 -importlib-metadata==7.1.0 -inquirer==3.1.4 -itsdangerous==2.1.2 -Jinja2==3.1.3 -jinxed==1.2.1 +idna==3.8 +imagecodecs==2024.6.1 +imageio==2.27.0 +imageio-ffmpeg==0.5.1 +imageio[ffmpeg]==2.27.0 +importlib-metadata==7.2.1 +importlib-resources==6.4.4; python_version < "3.10" or sys_platform != "emscripten" +itkwasm==1.0b178 +itkwasm-downsample==1.4.0 +itkwasm-downsample-emscripten==1.4.0; sys_platform == "emscripten" +itkwasm-downsample-wasi==1.4.0; sys_platform != "emscripten" +itsdangerous==2.2.0 +jinja2==3.1.4 jmespath==1.0.1 -joblib==1.3.2 +joblib==1.4.2 kiwisolver==1.4.5 -lazy-loader==0.3 -lightning==2.0.9.post0 -lightning-cloud==0.5.65 -lightning-utilities==0.11.0 +lazy-loader==0.4 +lightning==2.3.3 +lightning-utilities==0.11.6 +lit==18.1.8; platform_system == "Linux" and platform_machine == "x86_64" locket==1.0.0 lxml==4.9.4 -Mako==1.3.2 -markdown==3.6 +mako==1.3.5 +markdown==3.7 markdown-it-py==3.0.0 -MarkupSafe==2.1.5 -matplotlib==3.7.5 +markupsafe==2.1.5 +matplotlib==3.9.2 mdurl==0.1.2 -mlflow==2.11.3 -monai-weekly==1.4.dev2411 +mlflow==2.15.1 +mlflow-skinny==2.15.1 +monai-weekly==1.4.dev2434 mpmath==1.3.0 msgpack==1.0.8 multidict==6.0.5 natsort==8.4.0 -networkx==3.1 +networkx==3.2.1 +ngff-zarr==0.8.7 numcodecs==0.12.1 -numpy==1.24.4 -ome-types==0.5.1 -ome-zarr==0.8.3 +numpy==1.25.2 +nvidia-cublas-cu11==11.10.3.66; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-cupti-cu11==11.7.101; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-nvrtc-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cuda-runtime-cu11==11.7.99; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cudnn-cu11==8.5.0.96; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cufft-cu11==10.9.0.58; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-curand-cu11==10.2.10.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusolver-cu11==11.4.0.1; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-cusparse-cu11==11.7.4.91; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nccl-cu11==2.14.3; platform_system == "Linux" and platform_machine == "x86_64" +nvidia-nvtx-cu11==11.7.91; platform_system == "Linux" and platform_machine == "x86_64" +ome-types==0.5.1.post1 +ome-types[lxml]==0.5.1.post1 +ome-zarr==0.9.0 omegaconf==2.3.0 +online-stats==2023.6 +opentelemetry-api==1.27.0 +opentelemetry-sdk==1.27.0 +opentelemetry-semantic-conventions==0.48b0 optuna==2.10.1 -ordered-set==4.1.0 -ostat==0.2 -packaging==23.2 -pandas==1.5.3 -partd==1.4.1 -pbr==6.0.0 -pillow==10.2.0 -PrettyTable==3.10.0 -protobuf==3.20.1 -psutil==5.9.8 -pyarrow==10.0.1 -pydantic==2.1.1 +packaging==24.1 +pandas==2.2.2 +partd==1.4.2 +pbr==6.1.0 +pillow==10.4.0 +platformdirs==4.2.2 +positional-encodings==6.0.3 +prettytable==3.11.0 +protobuf==5.28.0 +psutil==6.0.0 +pyarrow==15.0.2 +pyasn1==0.6.0 +pyasn1-modules==0.4.0 +pydantic==2.8.2 pydantic-compat==0.1.2 -pydantic-core==2.4.0 -pyerfa==2.0.0.3 -pygments==2.17.2 -pyjwt==2.8.0 -pyparsing==3.1.2 -pyperclip==1.8.2 -pyreadline3==3.4.1 +pydantic-core==2.20.1 +pyerfa==2.0.1.4 +pygments==2.18.0 +pyparsing==3.1.4 +pyperclip==1.9.0 +pyreadline3==3.4.1; sys_platform == "win32" pyrootutils==1.0.4 python-dateutil==2.9.0.post0 python-dotenv==1.0.1 -python-editor==1.0.4 -python-multipart==0.0.9 -pytorch-lightning==2.2.1 +pytorch-lightning==2.3.3 pytz==2024.1 -PyWavelets==1.4.1 -pywin32==306 -PyYAML==6.0.1 +pywin32==306; sys_platform == "win32" +pyyaml==6.0.2 querystring-parser==1.2.4 -readchar==4.0.6 -requests==2.31.0 -resource-backed-dask-array==0.1.0 -rich==13.7.1 +requests==2.32.3 +rich==13.8.0 +rich-argparse==1.5.2 +rsa==4.9 s3fs==2023.3.0 s3transfer==0.6.2 -safetensors==0.4.2 -scikit-image==0.21.0 -scikit-learn==1.3.2 +safetensors==0.4.4 +scikit-image==0.22.0 +scikit-learn==1.5.1 scipy==1.9.3 -setuptools==69.2.0 +semver==3.0.2 +setuptools==74.0.0 six==1.16.0 smmap==5.0.1 -sniffio==1.3.1 sortedcontainers==2.4.0 -soupsieve==2.5 -sqlalchemy==2.0.28 -sqlparse==0.4.4 -starlette==0.36.3 -starsessions==1.3.0 -stevedore==5.2.0 -sympy==1.12 +sqlalchemy==2.0.32 +sqlparse==0.5.1 +stevedore==5.3.0 +sympy==1.13.2 tblib==3.0.0 termcolor==2.4.0 -threadpoolctl==3.4.0 -tifffile==2023.7.10 -timm==0.9.16 +threadpoolctl==3.5.0 +tifffile==2023.2.28 +timm==1.0.9 toolz==0.12.1 torch==2.0.1 -torchmetrics==1.3.2 -torchserve==0.10.0 +torchmetrics==1.4.1 +torchserve==0.11.1 torchvision==0.15.2 -tornado==6.4 -tqdm==4.66.2 -traitlets==5.14.2 -types-python-dateutil==2.9.0.20240316 -typing-extensions==4.10.0 -universal-pathlib==0.2.2 -urllib3==1.26.18 -uvicorn==0.29.0 -waitress==3.0.0 +tornado==6.4.1 +tqdm==4.66.5 +triton==2.0.0; platform_system == "Linux" and platform_machine == "x86_64" +typing-extensions==4.12.2 +tzdata==2024.1 +universal-pathlib==0.2.3 +urllib3==1.26.20 +waitress==3.0.0; platform_system == "Windows" +wasmtime==24.0.0; sys_platform != "emscripten" wcwidth==0.2.13 -websocket-client==1.7.0 -websockets==12.0 -Werkzeug==3.0.1 -wheel==0.43.0 +werkzeug==3.0.4 +wheel==0.44.0 wrapt==1.16.0 -xarray==2023.1.0 -xmlschema==3.1.0 +xarray==2024.7.0 +xmlschema==3.3.2 xsdata==24.3.1 yarl==1.9.4 -zarr==2.16.1 +zarr==2.15.0 zict==3.0.0 -zipp==3.18.1 +zipp==3.20.1