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CHANGELOG.md

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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.

Upcoming

Long-term

  • Establish default values for functions #11

[v1.0.0]

  • CRAN release
  • Add pkgdown site (#20)
  • Implement codecov.io (#5)
  • Add PoolPoweR-package.R (#18)
  • Configure and optimise GHA workflows

[v0.2.3]

Focus: Documentation

  • Revise documentation so majority @inheritParams fi_pool (#28)
  • Rename interval (#13)
  • Update docs with cluster and non-cluster cases (#14)
  • Move descriptions to details

[v0.2.2]

  • Implement warnings for input checks (#3, #27)
  • Include tests with expected inputs (#27, #34)

[Available]

[v0.2.0] - 2024-06-28

Added

  • Power and sample size calculations for fixed and variable designs.
  • S3 objects for sample_design data clumps.
  • Initial detection error functions.

Changed

  • design_effect functions converted to sample_design methods.
  • check_input rework.

[v0.1.1] - 2023-12-07

Added

  • Class system pool_strat_methods.R for catch_distribution() (#15)

Fixed

  • Documentation for _random() functions and pooling_strategies.R (#31)
  • Tests (#29, #30)
  • Multiple local function definitions for integrand (#21)
  • check_rho() added to input_check() (#32)

[v0.1.0] - 2023-12-05

Period sampling functions.

Added

  • fi_pool_cluster_random() and optimise_random_prevalence() for evaluating and designing surverys where the number of units caught at each site (or overall) are random
  • Machinery to make the above work (catch_distributions.R, pooling_strategies.R)

Fixed

  • Convergence of integrals with fi_pool_cluster() introduced by edge cases.

Changed

  • fi_pool_cluster() integration will throw an error with extreme cases.

[v0.0.2] - 2023-12-05

Test coverage at 96.79%, but still requires considerable revision.

Added

  • Helper functions for arguments in check_inputs.R. Implemented in mainly user-facing functions: optimise_s_prevalence(), optimise_sN_prevalence(), design_effect() and fi_pool_cluster() (#2)
  • Unit tests with reasonable examples from #11.
  • test-coverage and GHA (#5)

Changed

  • Error and warning handling for fi_pool_cluster() inputs

Removed

  • Slower fi_pool_cluster() unit tests (cases where $s>1$ and $N>1$), these also had extreme parameters.

[v0.0.1] MVP!

Added

  • End-user-ready PoolPoweR package with core functions (#1, #4, #6, #7, #8, #10, #11)
  • GitHub Action workflows check-standard and test-coverage implemented (#5)

[0.0.1]: