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read.me.txt
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Repository of code and data associated to 'Trait-based model reveals mechanisms underlying biodiversity-ecosystme functioning relationships'
Authors: Aurore Maureaud, Ken H. Andersen, Lai Zhang, Martin Lindegren
### CODE FILES
File 'code.figures.R'
R Code to reproduce the figures of and analysesthe paper
File 'code.SI.r'
R Code to reproduce the figures and analyses of the supplementary information
### DATA FILES
File 'SimulationsHighAlpha.csv'
# run ID
# homerange - C is alpha=2
# poolsize - number of species in initial pool
# sr - species richness
# biomass - biomass of all species in the food web
# evesimpson - Simpson's evenness based on species biomass
# evesimspon.ab - Simpson's evenness based on species abundances
# metab - metabolism rate of all spp
# gainr - production rate of all spp
# PB1 - production/biomass
# maxTL - maximum trophic level
# meanTL - mean trophic level
# connectance - number of links/number of spp
# top - number of top-predator(s) in the food web
# max.prop - biomass proportion occupied by the dominance spp
# B.dom - biomass of the dominant spp
# propR.used - proportion of the resource used in the food web
# NS01 - trait space threshold1
# NS001 - trait space threshold2
# NS0001 - trait space threshold3
# NS00001 - trait space threshold4
File 'SimulationsSmallAlpha.csv'
# run ID
# homerange - A is alpha=0.5
# poolsize - number of species in initial pool
# sr - species richness
# biomass - biomass of all species in the food web
# evesimpson - Simpson's evenness based on species biomass
# evesimspon.ab - Simpson's evenness based on species abundances
# metab - metabolism rate of all spp
# gainr - production rate of all spp
# PB1 - production/biomass
# maxTL - maximum trophic level
# meanTL - mean trophic level
# connectance - number of links/number of spp
# top - number of top-predator(s) in the food web
# max.prop - biomass proportion occupied by the dominance spp
# B.dom - biomass of the dominant spp
# propR.used - proportion of the resource used in the food web
# NS01 - trait space threshold1
# NS001 - trait space threshold2
# NS0001 - trait space threshold3
# NS00001 - trait space threshold4
File 'Species.Metrics1.Data' & 'Species.Metrics2.RData'
# species - species numbers
# habitat - coordinate on the habitat axis
# size - coordinate on the size axis
# biomass - biomass of the species
# PB - production/biomass ratio of the species
# metab - metabolism of the species
# Consumtpion - consumption rate of the species
# PredLoss - predation loss experiences by the species
# runs - runID
# homrange - A corresponds to alpha=0.5
# pool - number of species in initial pool