negative num_cpue for GSL-N in the FishGlob_public_std_clean file

[AquaAuma]

Shahar Chaikin found negative values of num_cpue in the FishGlob_public_std_clean file for GSL-N.

It made me realize changes @zoekitchel made to the NA surveys in 2024 were not compiled in the FishGlob files because I was waiting an answer on a previous issue (#47).
Can someone help? @jepa @zoekitchel @mpinsky @afredston
Thanks in advance!

[afredston]

thanks for the heads-up, @shahar710!

@zoekitchel re #47 let me know if you want me to try running get_neus.R and then merge.R.

I tried running get_gsl-n.R and ran into a different error that I think arose from updating taxize (ropensci/taxize#942). just FYI that may trip us up re-compiling the full FISHGLOB dataset.

[shahar710]

Sure.

I am not too familiar with the codes related to the project but let me know if there is something I can help with.

Thanks.

[zoekitchel]

@afredston Yeah, unfortunately that's a bit of a roadblock. Not sure how we want to move forward on that. I can work on an alternative to clean_taxa() function as it's currently written.

[afredston]

Multiple people have reported the same issue with taxize. Depending on the urgency of this update we can wait and see if it gets resolved there—I think that will be more straightforward than trying to redo the taxonomic cleaning without it.