ci_validation.yml

name: ci_validation 

on:
    push:
      branches: [ "main" ]
    pull_request:
      branches: [ "main" ]

permissions: write-all

jobs:
  build:
    runs-on: "ubuntu-latest"
    defaults:
      run:
        shell: bash -el {0}
    steps:
      - uses: actions/checkout@v4
      - uses: conda-incubator/setup-miniconda@v3  # https://github.com/marketplace/actions/setup-miniconda
        with:
          activate-environment: exocore
          environment-file: environment.yml
          python-version: 3.12
          auto-activate-base: false
      - run: |
          conda install nbconvert
      - name: Gather changed notebooks
        id: changed-files
        uses: tj-actions/changed-files@v44.5.2
        with:
          files: |
            **/*.ipynb
      - name: Executing changed notebooks
        run: |
          for file in ${{ steps.changed-files.outputs.all_changed_files }}; do
            echo "$file was updated, executing notebook"
            jupyter nbconvert --template classic --to html --execute $file
          done