From c539f8b6932ba3dad1977feed34d77bca9d1236e Mon Sep 17 00:00:00 2001 From: Sujai Kumar Date: Fri, 18 Aug 2023 19:20:44 +0100 Subject: [PATCH] update from form --- README.md | 26 ++++++++++++++++++-------- docs/README.md | 26 ++++++++++++++++++-------- mkdocs.yml | 4 ++-- 3 files changed, 38 insertions(+), 18 deletions(-) diff --git a/README.md b/README.md index ead696d..37acf94 100644 --- a/README.md +++ b/README.md @@ -1,23 +1,33 @@ -# $SESSIONTITLE +# Annotating genomes the Ensembl way - General concepts + Case study This session is part of [**Biodiversity Genomics Academy 2023**](https://BGA23.org) ## Session Leader(s) -$SESSIONLEADERS +Leanne Haggerty +Ensembl Genome Annotation Project Leader +EMBL-EBI ## Description -$SESSIONDESCRIPTION +By the end of this session you will have: + +1. Obtained an overview of state-of-the art methods and tools for genome annotation +2. Understood their advantages/limitations in different use-cases +3. Gained a picture of the quality measures of existing annotations +4. Discussed the future of genome annotation methodologies ## Prerequisites -$SESSIONPREREQUISITES +1. Understand the terms genome assembly, reads, contigs +2. Understand what a gene model is, what introns and exons are +3. Understand what transcriptomic and protein data are +4. Understand the concept of sequence alignment -!!! warning "Please make sure you meet the prerequisites above" +!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above" You will get the most out of this session if you meet the prerequisites above. + + Please also read the description carefully to see if this session is relevant to you. - If you don't meet the prerequisites, please consider emailing tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. - - If you have a webinar-only or recording-only slot, there is no need to cancel that as these are view-only slots and are effectively unlimited. + If you don't meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. diff --git a/docs/README.md b/docs/README.md index ead696d..37acf94 100644 --- a/docs/README.md +++ b/docs/README.md @@ -1,23 +1,33 @@ -# $SESSIONTITLE +# Annotating genomes the Ensembl way - General concepts + Case study This session is part of [**Biodiversity Genomics Academy 2023**](https://BGA23.org) ## Session Leader(s) -$SESSIONLEADERS +Leanne Haggerty +Ensembl Genome Annotation Project Leader +EMBL-EBI ## Description -$SESSIONDESCRIPTION +By the end of this session you will have: + +1. Obtained an overview of state-of-the art methods and tools for genome annotation +2. Understood their advantages/limitations in different use-cases +3. Gained a picture of the quality measures of existing annotations +4. Discussed the future of genome annotation methodologies ## Prerequisites -$SESSIONPREREQUISITES +1. Understand the terms genome assembly, reads, contigs +2. Understand what a gene model is, what introns and exons are +3. Understand what transcriptomic and protein data are +4. Understand the concept of sequence alignment -!!! warning "Please make sure you meet the prerequisites above" +!!! warning "Please make sure you MEET THE PREREQUISITES and READ THE DESCRIPTION above" You will get the most out of this session if you meet the prerequisites above. + + Please also read the description carefully to see if this session is relevant to you. - If you don't meet the prerequisites, please consider emailing tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. - - If you have a webinar-only or recording-only slot, there is no need to cancel that as these are view-only slots and are effectively unlimited. + If you don't meet the prerequisites or change your mind based on the description or are no longer available at the session time, please email tol-training at sanger.ac.uk to cancel your slot so that someone else on the waitlist might attend. diff --git a/mkdocs.yml b/mkdocs.yml index 2ca2c4a..cc63ee1 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -1,5 +1,5 @@ -site_name: TEMPLATE -edit_uri: https://github.com/bgacademy23/TEMPLATE/blob/main/docs +site_name: ensembl-annotation +edit_uri: https://github.com/bgacademy23/ensembl-annotation/blob/main/docs nav: - Home: README.md