diff --git a/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog b/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog index 22d62216..066987ae 100644 --- a/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog +++ b/bu_isciii/templates/wgstrio/ANALYSIS/ANALYSIS01_GENOME/03-annotation/lablog @@ -144,7 +144,4 @@ cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_herita echo "rm ./filter_heritance/filter_heritance_genes/id_*" >> _05_filter_heritance_ALL.sh cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_genes/vep_annot_%_genes.txt" >> _05_filter_heritance_ALL.sh echo "rm ./filter_heritance/filter_heritance_exome/id_*" >> _05_filter_heritance_ALL.sh -cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_exome/vep_annot_%_exome.txt" >> _05_filter_heritance_ALL.sh - -# annot_all table is huge, lets shrink it a little bit -echo "srun --partition short_idx -chdir ${scratch_dir} --output logs/COMPRESS_ALL.log --job-name COMPRESS_ANNOT_ALL gzip variants_annot_all.tab &" >> _05_filter_heritance_ALL.sh \ No newline at end of file +cat inheritance_types.txt | xargs -I % echo "rm ./filter_heritance/filter_heritance_exome/vep_annot_%_exome.txt" >> _05_filter_heritance_ALL.sh \ No newline at end of file