This is the application specification for service with identifier TaxonomicClassification.
The backend script implementing the application is App-TaxonomicClassification.pl.
The raw JSON file for this specification is TaxonomicClassification.json.
This service performs the following task: Compute taxonomic classification for read data
It takes the following parameters:
| id | label | type | required | default value |
|---|---|---|---|---|
| host_genome | Host Genome | enum | ✔️ | no_host |
| analysis_type | Analysis Type | enum | ✔️ | 16S |
| paired_end_libs | group | |||
| single_end_libs | group | |||
| srr_libs | group | |||
| database | Database | enum | ✔️ | SILVA |
| save_classified_sequences | Save the classified sequences | bool | 0 | |
| save_unclassified_sequences | Save the unclassified sequences | bool | 0 | |
| confidence_interval | 0.1 | |||
| output_path | Output Folder | folder | ✔️ | |
| output_file | File Basename | wsid | ✔️ |