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HVSeeker_DNA_environment.yml
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HVSeeker_DNA_environment.yml
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name: deep_test
channels:
- defaults
dependencies:
- _libgcc_mutex==0.1=conda_forge
- _openmp_mutex==4.5=2_kmp_llvm
- _tflow_select==2.3.0=mkl
- abseil-cpp==20211102.0=h93e1e8c_2
- absl-py==2.0.0=pyhd8ed1ab_0
- aiohttp==3.8.5=py311h5eee18b_0
- aiosignal==1.3.1=pyhd8ed1ab_0
- astunparse==1.6.3=pyhd8ed1ab_0
- async-timeout==4.0.2=py311h06a4308_0
- attrs==23.1.0=pyh71513ae_1
- biopython==1.78=py311h5eee18b_0
- blas==1.0=mkl
- blinker==1.6.3=pyhd8ed1ab_0
- bottleneck==1.3.5=py311hbed6279_0
- brotli-bin==1.1.0=hd590300_1
- brotli==1.1.0=hd590300_1
- brotlipy==0.7.0=py311h5eee18b_1002
- bzip2==1.0.8=h7b6447c_0
- c-ares==1.20.1=hd590300_0
- ca-certificates==2023.12.12
- cachetools==5.3.1=pyhd8ed1ab_0
- certifi==2024.2.2
- cffi==1.15.1=py311h5eee18b_3
- charset-normalizer==2.0.4=pyhd3eb1b0_0
- click==8.1.7=unix_pyh707e725_0
- contourpy==1.1.1=py311h9547e67_1
- cryptography==38.0.4=py311hb3c386c_0
- cuda-cccl==12.2.140=0
- cuda-command-line-tools==12.1.1=0
- cuda-compiler==12.2.2=0
- cuda-cudart==12.1.105=0
- cuda-cuobjdump==12.2.140=0
- cuda-cupti==12.1.105=0
- cuda-cuxxfilt==12.2.140=0
- cuda-documentation==12.2.140=0
- cuda-driver-dev==12.2.140=0
- cuda-gdb==12.2.140=0
- cuda-libraries-dev==11.3.0=h3b286be_0
- cuda-libraries==12.1.0=0
- cuda-nsight-compute==12.2.2=0
- cuda-nsight==12.2.144=0
- cuda-nvcc==12.2.140=0
- cuda-nvdisasm==12.2.140=0
- cuda-nvml-dev==12.2.140=0
- cuda-nvprof==12.2.142=0
- cuda-nvprune==12.2.140=0
- cuda-nvrtc==12.1.105=0
- cuda-nvtx==12.1.105=0
- cuda-nvvp==12.2.142=0
- cuda-opencl-dev==12.2.140=0
- cuda-opencl==12.2.140=0
- cuda-profiler-api==12.2.140=0
- cuda-runtime==12.1.0=0
- cuda-samples==11.6.101=h8efea70_0
- cuda-sanitizer-api==12.2.140=0
- cuda-thrust==11.4.43=h00096a5_0
- cuda-toolkit==11.3.0=h3b286be_0
- cuda-tools==11.3.0=h3b286be_0
- cuda-visual-tools==11.3.0=h3b286be_0
- cycler==0.12.1=pyhd8ed1ab_0
- cyrus-sasl==2.1.27=h957375c_6
- dbus==1.13.18=hb2f20db_0
- expat==2.5.0=hcb278e6_1
- ffmpeg==4.3=hf484d3e_0
- filelock==3.9.0=py311h06a4308_0
- flatbuffers==23.5.26=h59595ed_1
- fontconfig==2.14.1=h4c34cd2_2
- fonttools==4.43.1=py311h459d7ec_0
- freetype==2.12.1=h4a9f257_0
- frozenlist==1.4.0=py311h459d7ec_1
- gast==0.4.0=pyh9f0ad1d_0
- gds-tools==1.7.2.10=0
- giflib==5.2.1=h5eee18b_3
- glib==2.69.1=he621ea3_2
- gmp==6.2.1=h295c915_3
- gmpy2==2.1.2=py311hc9b5ff0_0
- gnutls==3.6.15=he1e5248_0
- google-auth-oauthlib==1.0.0=pyhd8ed1ab_1
- google-auth==2.23.3=pyhca7485f_0
- google-pasta==0.2.0=pyh8c360ce_0
- grpc-cpp==1.48.2=h5bf31a4_0
- grpcio==1.48.2=py311h5bf31a4_0
- gst-plugins-base==1.14.1=h6a678d5_1
- gstreamer==1.14.1=h5eee18b_1
- h5py==3.9.0=py311hdd6beaf_0
- hdf5==1.12.1=nompi_h2750804_100
- icu==58.2=hf484d3e_1000
- idna==3.4=py311h06a4308_0
- importlib-metadata==6.8.0=pyha770c72_0
- intel-openmp==2023.1.0=hdb19cb5_46305
- jinja2==3.1.2=py311h06a4308_0
- joblib==1.2.0=py311h06a4308_0
- jpeg==9e=h5eee18b_1
- keras-preprocessing==1.1.2=pyhd8ed1ab_0
- keras==2.12.0=py311h06a4308_0
- keyutils==1.6.1=h166bdaf_0
- kiwisolver==1.4.5=py311h9547e67_1
- krb5==1.20.1=hf9c8cef_0
- lame==3.100=h7b6447c_0
- lcms2==2.12=h3be6417_0
- ld_impl_linux-64==2.38=h1181459_1
- lerc==3.0=h295c915_0
- libabseil==20211102.0=cxx17_h48a1fff_2
- libblas==3.9.0=1_h86c2bf4_netlib
- libbrotlicommon==1.1.0=hd590300_1
- libbrotlidec==1.1.0=hd590300_1
- libbrotlienc==1.1.0=hd590300_1
- libcblas==3.9.0=5_h92ddd45_netlib
- libclang13==14.0.6=default_he11475f_1
- libclang==14.0.6=default_hc6dbbc7_1
- libcublas==12.1.0.26=0
- libcufft==11.0.2.4=0
- libcufile-dev==1.7.2.10=0
- libcufile-static==1.7.2.10=0
- libcufile==1.7.2.10=0
- libcups==2.4.2=ha637b67_0
- libcurand-dev==10.3.3.141=0
- libcurand-static==10.3.3.141=0
- libcurand==10.3.3.141=0
- libcurl==8.2.1=h91b91d3_0
- libcusolver==11.4.4.55=0
- libcusparse==12.0.2.55=0
- libdeflate==1.17=h5eee18b_1
- libedit==3.1.20191231=he28a2e2_2
- libev==4.33=h516909a_1
- libevent==2.1.12=h8f2d780_0
- libexpat==2.5.0=hcb278e6_1
- libffi==3.4.4=h6a678d5_0
- libgcc-ng==13.2.0=h807b86a_2
- libgfortran-ng==11.2.0=h00389a5_1
- libgfortran5==11.2.0=h1234567_1
- libiconv==1.16=h7f8727e_2
- libidn2==2.3.4=h5eee18b_0
- libjpeg-turbo==2.0.0=h9bf148f_0
- liblapack==3.9.0=5_h92ddd45_netlib
- libllvm14==14.0.6=hdb19cb5_3
- libnghttp2==1.52.0=ha637b67_1
- libnpp==12.0.2.50=0
- libntlm==1.4=h7f98852_1002
- libnvjitlink==12.1.105=0
- libnvjpeg==12.1.1.14=0
- libpng==1.6.39=h5eee18b_0
- libpq==12.15=h37d81fd_1
- libprotobuf==3.20.3=he621ea3_0
- libssh2==1.10.0=h37d81fd_2
- libstdcxx-ng==13.2.0=h7e041cc_2
- libtasn1==4.19.0=h5eee18b_0
- libtiff==4.5.1=h6a678d5_0
- libunistring==0.9.10=h27cfd23_0
- libuuid==1.41.5=h5eee18b_0
- libwebp-base==1.3.2=h5eee18b_0
- libwebp==1.3.2=h11a3e52_0
- libxcb==1.16=hd590300_0
- libxkbcommon==1.0.1=h5eee18b_1
- libxml2==2.10.4=hcbfbd50_0
- libxslt==1.1.37=h873f0b0_0
- llvm-openmp==14.0.6=h9e868ea_0
- lz4-c==1.9.4=h6a678d5_0
- markdown==3.5=pyhd8ed1ab_0
- markupsafe==2.1.1=py311h5eee18b_0
- matplotlib-base==3.8.0=py311h54ef318_1
- matplotlib==3.8.0=py311h38be061_2
- mkl-service==2.4.0=py311h5eee18b_1
- mkl==2023.1.0=h213fc3f_46343
- mkl_fft==1.3.8=py311h5eee18b_0
- mkl_random==1.2.4=py311hdb19cb5_0
- mpc==1.1.0=h10f8cd9_1
- mpfr==4.0.2=hb69a4c5_1
- mpmath==1.3.0=py311h06a4308_0
- multidict==6.0.4=py311h459d7ec_1
- munkres==1.1.4=pyh9f0ad1d_0
- mysql==5.7.24=hbb652a2_0
- ncurses==6.4=h6a678d5_0
- nettle==3.7.3=hbbd107a_1
- networkx==3.1=py311h06a4308_0
- nsight-compute==2023.2.2.3=0
- numexpr==2.8.7=py311h65dcdc2_0
- numpy==1.23.5=py311h7d28db0_0
- oauthlib==3.2.2=pyhd8ed1ab_0
- openh264==2.1.1=h4ff587b_0
- openjpeg==2.4.0=h3ad879b_0
- openssl==1.1.1w
- opt_einsum==3.3.0=pyhc1e730c_2
- packaging==23.2=pyhd8ed1ab_0
- pandas==2.0.3=py311ha02d727_0
- pcre==8.45=h9c3ff4c_0
- pillow==10.0.1=py311ha6cbd5a_0
- pip==23.2.1=py311h06a4308_0
- ply==3.11=py_1
- protobuf==3.20.3=py311hcafe171_1
- psutil==5.9.0=py311h5eee18b_0
- pthread-stubs==0.4=h36c2ea0_1001
- pyasn1-modules==0.3.0=pyhd8ed1ab_0
- pyasn1==0.5.0=pyhd8ed1ab_0
- pycparser==2.21=pyhd3eb1b0_0
- pyjwt==2.8.0=pyhd8ed1ab_0
- pyopenssl==23.2.0=py311h06a4308_0
- pyparsing==3.1.1=pyhd8ed1ab_0
- pyqt5-sip==12.11.0=py311h6a678d5_0
- pyqt==5.15.7=py311h6a678d5_0
- pysocks==1.7.1=py311h06a4308_0
- python-dateutil==2.8.2=pyhd3eb1b0_0
- python-flatbuffers==23.5.26=pyhd8ed1ab_0
- python-tzdata==2023.3=pyhd3eb1b0_0
- python==3.11.5=h7a1cb2a_0
- python_abi==3.11=2_cp311
- pytorch-mutex==1.0=cuda
- pytz==2023.3.post1=py311h06a4308_0
- pyu2f==0.1.5=pyhd8ed1ab_0
- pyyaml==6.0=py311h5eee18b_1
- qt-main==5.15.2=h5b8104b_9
- qt-webengine==5.15.9=hbbf29b9_6
- qtwebkit==5.212=h3fafdc1_5
- re2==2022.04.01=h27087fc_0
- readline==8.2=h5eee18b_0
- requests-oauthlib==1.3.1=pyhd8ed1ab_0
- requests==2.31.0=py311h06a4308_0
- rsa==4.9=pyhd8ed1ab_0
- scikit-learn==1.2.2=py311h6a678d5_1
- scipy==1.11.3=py311h08b1b3b_0
- setuptools==68.0.0=py311h06a4308_0
- sip==6.6.2=py311h6a678d5_0
- six==1.16.0=pyhd3eb1b0_1
- snappy==1.1.10=h9fff704_0
- sqlite==3.41.2=h5eee18b_0
- sympy==1.11.1=py311h06a4308_0
- tbb==2021.8.0=hdb19cb5_0
- tensorboard-data-server==0.7.0=py311h52d8a92_0
- tensorboard-plugin-wit==1.8.1=pyhd8ed1ab_0
- tensorboard==2.12.1=py311h06a4308_0
- tensorflow-base==2.12.0=mkl_py311he5f8e37_0
- tensorflow-estimator==2.12.0=py311h06a4308_0
- tensorflow==2.12.0=mkl_py311h34a0fa1_0
- termcolor==2.3.0=pyhd8ed1ab_0
- threadpoolctl==2.2.0=pyh0d69192_0
- tk==8.6.12=h1ccaba5_0
- toml==0.10.2=pyhd8ed1ab_0
- torchtriton==2.1.0=py311
- tornado==6.3.3=py311h459d7ec_1
- typing_extensions==4.9.0
- tzdata==2023c=h04d1e81_0
- urllib3==1.26.16=py311h06a4308_0
- werkzeug==3.0.0=pyhd8ed1ab_0
- wheel==0.41.2=py311h06a4308_0
- wrapt==1.15.0=py311h459d7ec_1
- xorg-libxau==1.0.11=hd590300_0
- xorg-libxdmcp==1.1.3=h7f98852_0
- xz==5.4.2=h5eee18b_0
- yaml==0.2.5=h7b6447c_0
- yarl==1.9.2=py311h459d7ec_1
- zipp==3.17.0=pyhd8ed1ab_0
- zlib==1.2.13=h5eee18b_0
- zstd==1.5.5=hc292b87_0
- seaborn
- prodigal
- cudatoolkit=11.4
- pytorch
- pytorch-cuda=12.1
- torchaudio
- torchvision