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[helix-based] ideas for improvements #136

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martin-raden opened this issue Jan 14, 2019 · 1 comment

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student project

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martin-raden commented Jan 14, 2019

enforce GC ends (ala pkKnots)
no GU end
minimal E of terminal loops

might be useful for seed filtering as well ...

check how to combine with seed-and-extension strategy

martin-raden added the student project label

martin-raden changed the title ~~Improve helix-length constrained predictions~~ [helix-based] ideas for improvements

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martin-raden commented Jun 12, 2019

noLP for non-canonical helices

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