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[helix-based] context-sensitive helix-based predictions #139

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martin-raden opened this issue Feb 23, 2019 · 1 comment

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student project

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martin-raden commented Feb 23, 2019

given the helix-based RNA-RNA interaction prediction mode, we want to apply context-sensitive length constraints.

needed:

HelixHandler wrapper for length-constrained helices
AccessibilityVRNA subclass that stores context-dependent ED values
Meta-Predictor to predict for exterior/interior unpaired context

contact:
Rick Gelhausen
Martin Raden

martin-raden added the student project label

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martin-raden commented Feb 23, 2019

related: https://genomebiology.biomedcentral.com/articles/10.1186/gb-2014-15-1-r16

CapR: revealing structural specificities of RNA-binding protein target recognition using CLIP-seq data

martin-raden changed the title ~~context-sensitive helix-based predictions~~ [helix-based] context-sensitive helix-based predictions

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