From 07af7edbedc8fd6e5b60895ca6d9bd21b1aa71dd Mon Sep 17 00:00:00 2001 From: avani-bhojwani <68935109+avani-bhojwani@users.noreply.github.com> Date: Tue, 28 Nov 2023 00:18:29 +1000 Subject: [PATCH] update version of EvidentialGene (#550) --- evidential-gene/23jul15/Dockerfile | 35 ++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 evidential-gene/23jul15/Dockerfile diff --git a/evidential-gene/23jul15/Dockerfile b/evidential-gene/23jul15/Dockerfile new file mode 100644 index 00000000..14e99944 --- /dev/null +++ b/evidential-gene/23jul15/Dockerfile @@ -0,0 +1,35 @@ +################## BASE IMAGE ###################### +FROM biocontainers/biocontainers:v1.2.0_cv2 + +################## METADATA ###################### +LABEL base_image="biocontainers:v1.2.0_cv2" +LABEL version="1" +LABEL software="evidential-gene" +LABEL software.version="23jul15" +LABEL about.summary="EvidentialGene is a genome informatics project for Evidence Directed Gene Construction for Eukaryotes" +LABEL about.home="http://arthropods.eugenes.org/EvidentialGene/evigene/" +LABEL about.documentation="http://arthropods.eugenes.org/EvidentialGene/evigene/docs/" +LABEL about.license_file="http://arthropods.eugenes.org/about/about-EvidentialGene/" +LABEL about.tags="Genomics, Transcriptomics" + +################## MAINTAINER ###################### +MAINTAINER Avani Bhojwani + +################## INSTALLATION ###################### + +USER 0 + +RUN apt-get update && apt-get upgrade -y && \ + apt-get install -y perl cpanminus exonerate cd-hit ncbi-blast+ && \ + wget -O EvidentialGene.tar http://arthropods.eugenes.org/EvidentialGene/other/evigene_old/evigene_older/evigene23jul15.tar && \ + tar -xvf EvidentialGene.tar && rm EvidentialGene.tar && \ + chmod +x evigene/scripts/*.pl && \ + mv evigene /opt/ && \ + apt-get clean && \ + rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* + +ENV PATH="/opt/evigene/scripts:/opt/evigene/scripts/genoasm:/opt/evigene/scripts/genes:/opt/evigene/scripts/prot:/opt/evigene/scripts/genes/evgpipe_scriptwork:/opt/evigene/scripts/rnaseq:/opt/evigene/scripts/omcl:/opt/evigene/scripts/grid:/opt/evigene/scripts/ests:${PATH}" + +USER biodocker + +WORKDIR /data/ \ No newline at end of file