From 1957d37f9c9b973820fa8459640332cb3fd1d0f4 Mon Sep 17 00:00:00 2001
From: Lincoln Sherpa <87706210+linsherpa@users.noreply.github.com>
Date: Mon, 4 Mar 2024 09:22:04 +0100
Subject: [PATCH] Update Dockerfile [FileConverterCommand: Access to nonroot
 user without creation of header

Addition of the command line (line number 60)

"echo '#!/bin/sh\nsudo -E -H -u root FileConverter "$@"' > /usr/bin/FileConverter_anyuser && "

problem:
when the output as a directory is specified, then .config files are also copied to the local machine from the docker.

Description: This will remove the .config folder generated.

The problem is similar to :
https://github.com/ProteoWizard/container/pull/23

and

https://github.com/BioContainers/containers/pull/524
---
 openms/2.2.0/Dockerfile | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/openms/2.2.0/Dockerfile b/openms/2.2.0/Dockerfile
index 4b07107a..43b30a3d 100644
--- a/openms/2.2.0/Dockerfile
+++ b/openms/2.2.0/Dockerfile
@@ -4,7 +4,7 @@ FROM biocontainers/biocontainers:v1.0.0_cv4
 
 ################## METADATA ######################
 LABEL base_image="biocontainers:v1.0.0_cv4"
-LABEL version="5"
+LABEL version="6"
 LABEL software="OpenMS"
 LABEL software.version="2.2.0"
 LABEL about.summary="C++ libraries ans tools for MS/MS data analysis"
@@ -59,6 +59,8 @@ RUN      apt-get -y update && \
          echo "ALL     ALL=NOPASSWD:  ALL" >> /etc/sudoers && \
          echo '#!/bin/sh\nsudo -E -H -u root FileInfo "$@"' > /usr/local/bin/FileInfo_anyuser && \
          chmod ugo+rx /usr/local/bin/FileInfo* && \
+         echo '#!/bin/sh\nsudo -E -H -u root FileConverter "$@"' > /usr/local/bin/FileConverter_anyuser && \
+         chmod ugo+rx /usr/local/bin/FileConverter* && \
          /sbin/ldconfig -v && \
          apt-get clean && \
          apt-get purge && \