From 49fed72b470c3d4de205ebd145ae05cb578c6aff Mon Sep 17 00:00:00 2001
From: Florian Wuennemann <flowuenne@gmail.com>
Date: Thu, 19 Oct 2023 14:56:00 -0400
Subject: [PATCH] Created recipe for cellpose version 2.2.2. (#536)

---
 cellpose/2.2.2/Dockerfile | 56 +++++++++++++++++++++++++++++++++++++++
 1 file changed, 56 insertions(+)
 create mode 100644 cellpose/2.2.2/Dockerfile

diff --git a/cellpose/2.2.2/Dockerfile b/cellpose/2.2.2/Dockerfile
new file mode 100644
index 00000000..dec28ffb
--- /dev/null
+++ b/cellpose/2.2.2/Dockerfile
@@ -0,0 +1,56 @@
+FROM python:3.8
+
+LABEL base_image="python:3.8"
+LABEL version="2"
+LABEL software="cellpose"
+LABEL software.version="2.2.2"
+LABEL about.summary="A generalist algorithm for cell and nucleus segmentation."
+LABEL about.home="https://github.com/MouseLand/cellpose"
+LABEL about.license="BSD-3-Clause"
+LABEL about.license_file="https://github.com/MouseLand/cellpose/blob/main/LICENSE"
+LABEL about.documentation="https://cellpose.readthedocs.io/en/latest/"
+LABEL extra.identifiers.biotools=cellpose
+
+
+MAINTAINER Yi Sun <sunyi000@gmail.com>
+
+
+ARG DEBIAN_FRONTEND="noninteractive"
+ARG CELLPOSE_VERSION="2.2.2"
+
+ENV LANG en_US.UTF-8 \
+    LC_ALL en_US.UTF-8 \
+    LANGUAGE en_US:en  \
+    NUMBA_CACHE_DIR=/tmp
+
+RUN apt-get update -qq && \
+    apt-get install -y -q --no-install-recommends \
+            gcc \
+            python3-dev \
+            python3-pip \
+            python3-wheel \
+            libblas-dev \
+            liblapack-dev \
+            libatlas-base-dev \
+            gfortran \
+            apt-utils \
+            bzip2 \
+            ca-certificates \
+            curl \
+            locales \
+            unzip && \
+    apt-get clean && \
+    rm -rf /var/lib/apt/lists/* 
+
+
+RUN sed -i '/en_US.UTF-8/s/^# //g' /etc/locale.gen && \
+    locale-gen
+
+RUN pip install -U pip
+RUN pip install numpy numba>=0.43.1
+RUN pip install wheel scipy
+RUN pip install --no-cache-dir PyQt5 PyQt5.sip torch>=1.6 opencv-python-headless pyqtgraph>=0.11.0rc0 natsort
+
+RUN pip install -U scikit-image matplotlib
+RUN pip install scikit-learn tqdm tifffile fastremap 
+RUN pip install cellpose==$CELLPOSE_VERSION