From a99676e41bb480dac034ba1ba664593540776119 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 22 Jan 2024 19:17:33 +0000
Subject: [PATCH] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 src/rds2py/granges.py       | 6 ++++--
 src/rds2py/interface.py     | 2 +-
 tests/data/generate_files.R | 2 +-
 tests/test_granges.py       | 2 +-
 4 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/src/rds2py/granges.py b/src/rds2py/granges.py
index a621cb7..02314ce 100644
--- a/src/rds2py/granges.py
+++ b/src/rds2py/granges.py
@@ -47,7 +47,9 @@ def as_granges(robj):
         genome=_seqinfo_genome,
     )
 
-    _mcols = BiocFrame.from_pandas(as_pandas_from_dframe(robj["attributes"]["elementMetadata"]))
+    _mcols = BiocFrame.from_pandas(
+        as_pandas_from_dframe(robj["attributes"]["elementMetadata"])
+    )
 
     _gr_names = None
     if "NAMES" in robj["attributes"]:
@@ -73,7 +75,7 @@ def _as_list(robj):
     if "attributes" in _attr_vals["values"]:
         if "levels" in _attr_vals["values"]["attributes"]:
             _levels_data = _attr_vals["values"]["attributes"]["levels"]["data"]
-            _data = [_levels_data[x-1] for x in _data]
+            _data = [_levels_data[x - 1] for x in _data]
 
     if "lengths" in _attr_vals:
         _final = []
diff --git a/src/rds2py/interface.py b/src/rds2py/interface.py
index 7611761..8f8ad93 100644
--- a/src/rds2py/interface.py
+++ b/src/rds2py/interface.py
@@ -255,4 +255,4 @@ def as_summarized_experiment(robj):
     else:
         raise TypeError(
             "`robj` is neither a `SummarizedExperiment` nor `SingleCellExperiment`."
-        )
\ No newline at end of file
+        )
diff --git a/tests/data/generate_files.R b/tests/data/generate_files.R
index e7cb66a..0aae82b 100644
--- a/tests/data/generate_files.R
+++ b/tests/data/generate_files.R
@@ -105,4 +105,4 @@ gr <- GRanges(
     score = 1:10,
     GC = seq(1, 0, length=10))
 
-saveRDS(gr, file="granges.rds")
\ No newline at end of file
+saveRDS(gr, file="granges.rds")
diff --git a/tests/test_granges.py b/tests/test_granges.py
index 3f438b3..4d6f94a 100644
--- a/tests/test_granges.py
+++ b/tests/test_granges.py
@@ -15,4 +15,4 @@ def test_granges():
 
     gr = as_granges(robj=robj)
 
-    assert isinstance(gr, GenomicRanges)
\ No newline at end of file
+    assert isinstance(gr, GenomicRanges)