From b8b367082841c661d78663ddbe9d3de19cc29716 Mon Sep 17 00:00:00 2001
From: jkanche <jayaram.kancherla@gmail.com>
Date: Tue, 5 Sep 2023 15:16:48 +0000
Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20BiocPy/r?=
 =?UTF-8?q?ds2py@4b2fae31746dede17868b90ce4843eafe8f731be=20=F0=9F=9A=80?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 .buildinfo                       |   2 +-
 _modules/index.html              |  10 ++---
 _modules/rds2py/interface.html   |  16 ++++----
 _modules/rds2py/parser.html      |  10 ++---
 _modules/rds2py/pdf.html         |  12 +++---
 _sources/index.md.txt            |   2 +-
 _static/documentation_options.js |   2 +-
 api/modules.html                 |  20 ++++-----
 api/rds2py.html                  |  67 +++++++++++++++----------------
 authors.html                     |  10 ++---
 changelog.html                   |  15 ++++---
 contributing.html                |  10 ++---
 genindex.html                    |   8 ++--
 index.html                       |  10 ++---
 license.html                     |  10 ++---
 objects.inv                      | Bin 682 -> 682 bytes
 py-modindex.html                 |   8 ++--
 readme.html                      |  15 ++++---
 search.html                      |   8 ++--
 searchindex.js                   |   2 +-
 tutorial.html                    |  10 ++---
 21 files changed, 125 insertions(+), 122 deletions(-)

diff --git a/.buildinfo b/.buildinfo
index 18c57f0..bd0aee9 100644
--- a/.buildinfo
+++ b/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: 32f993692c99819ed0fcaa2703aefb24
+config: c19ed4e4ac9900edcee450f7dd423bbe
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/_modules/index.html b/_modules/index.html
index 2b54934..8395b69 100644
--- a/_modules/index.html
+++ b/_modules/index.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Overview: module code - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>Overview: module code - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -234,7 +234,7 @@ <h1>All modules for which code is available</h1>
       
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../_static/documentation_options.js?v=4621528c"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/_modules/rds2py/interface.html b/_modules/rds2py/interface.html
index b3ab294..84f00b7 100644
--- a/_modules/rds2py/interface.html
+++ b/_modules/rds2py/interface.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py.interface - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py.interface - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -342,9 +342,8 @@ <h1>Source code for rds2py.interface</h1><div class="highlight"><pre>
 <span class="k">def</span> <span class="nf">as_summarized_experiment</span><span class="p">(</span>
     <span class="n">robj</span><span class="p">:</span> <span class="n">MutableMapping</span><span class="p">,</span>
 <span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Union</span><span class="p">[</span><span class="n">SummarizedExperiment</span><span class="p">,</span> <span class="n">SingleCellExperiment</span><span class="p">]:</span>
-<span class="w">    </span><span class="sd">&quot;&quot;&quot;Read an R object as a</span>
-<span class="sd">    :py:class:`~singlecellexperiment.SingleCellExperiment.SingleCellExperiment`</span>
-<span class="sd">    or :py:class:`~summarizedexperiment.SummarizedExperiment.SummarizedExperiment`.</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Read an R object as a :py:class:`~singlecellexperiment.SingleCellExperiment.SingleCellExperiment` or</span>
+<span class="sd">    :py:class:`~summarizedexperiment.SummarizedExperiment.SummarizedExperiment`.</span>
 
 <span class="sd">    Note: This function demonstrates how to parse a complex RDS object.</span>
 
@@ -365,7 +364,6 @@ <h1>Source code for rds2py.interface</h1><div class="highlight"><pre>
 <span class="sd">    Returns:</span>
 <span class="sd">        Union[SummarizedExperiment, SingleCellExperiment]: A `SummarizedExperiment` or</span>
 <span class="sd">        `SingleCellExperiment` from the R object.</span>
-
 <span class="sd">    &quot;&quot;&quot;</span>
     <span class="n">_cls</span> <span class="o">=</span> <span class="n">get_class</span><span class="p">(</span><span class="n">robj</span><span class="p">)</span>
 
@@ -503,7 +501,7 @@ <h1>Source code for rds2py.interface</h1><div class="highlight"><pre>
       
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../../_static/documentation_options.js?v=4621528c"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/_modules/rds2py/parser.html b/_modules/rds2py/parser.html
index 0cd20db..34c82d2 100644
--- a/_modules/rds2py/parser.html
+++ b/_modules/rds2py/parser.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py.parser - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py.parser - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -284,7 +284,7 @@ <h1>Source code for rds2py.parser</h1><div class="highlight"><pre>
       
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../../_static/documentation_options.js?v=4621528c"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/_modules/rds2py/pdf.html b/_modules/rds2py/pdf.html
index 50e4573..9ad5ff5 100644
--- a/_modules/rds2py/pdf.html
+++ b/_modules/rds2py/pdf.html
@@ -4,8 +4,8 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="../../genindex.html" /><link rel="search" title="Search" href="../../search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py.pdf - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py.pdf - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -122,7 +122,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -145,7 +145,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -243,7 +243,7 @@ <h1>Source code for rds2py.pdf</h1><div class="highlight"><pre>
 <div class="viewcode-block" id="as_pandas_from_dframe">
 <a class="viewcode-back" href="../../api/rds2py.html#rds2py.pdf.as_pandas_from_dframe">[docs]</a>
 <span class="k">def</span> <span class="nf">as_pandas_from_dframe</span><span class="p">(</span><span class="n">robj</span><span class="p">:</span> <span class="n">MutableMapping</span><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">DataFrame</span><span class="p">:</span>
-<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert a realized R object to a pandas data frame representation</span>
+<span class="w">    </span><span class="sd">&quot;&quot;&quot;Convert a realized R object to a pandas data frame representation.</span>
 
 <span class="sd">    Args:</span>
 <span class="sd">        robj (MutableMapping): Object parsed from the `RDS` file.</span>
@@ -312,7 +312,7 @@ <h1>Source code for rds2py.pdf</h1><div class="highlight"><pre>
       
     </aside>
   </div>
-</div><script src="../../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../../_static/documentation_options.js?v=4621528c"></script>
     <script src="../../_static/doctools.js?v=888ff710"></script>
     <script src="../../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/_sources/index.md.txt b/_sources/index.md.txt
index 977412e..8f6e12c 100644
--- a/_sources/index.md.txt
+++ b/_sources/index.md.txt
@@ -1,6 +1,6 @@
 # rds2py
 
-Parse, extract and create Python representations for datasets stored in RDS files. It supports Bioconductor's `SummarizedExperiment` and `SingleCellExperiment` objects. This is possible because of [Aaron's rds2cpp library](https://github.com/LTLA/rds2cpp). 
+Parse, extract and create Python representations for datasets stored in RDS files. It supports Bioconductor's `SummarizedExperiment` and `SingleCellExperiment` objects. This is possible because of [Aaron's rds2cpp library](https://github.com/LTLA/rds2cpp).
 
 The package uses memory views (except for strings) so that we can access the same memory from C++ space in Python (through Cython of course). This is especially useful for large datasets so we don't make copies of data.
 
diff --git a/_static/documentation_options.js b/_static/documentation_options.js
index 7254ddd..b87c3f5 100644
--- a/_static/documentation_options.js
+++ b/_static/documentation_options.js
@@ -1,5 +1,5 @@
 const DOCUMENTATION_OPTIONS = {
-    VERSION: '0.3.0',
+    VERSION: '0.3.1',
     LANGUAGE: 'en',
     COLLAPSE_INDEX: false,
     BUILDER: 'html',
diff --git a/api/modules.html b/api/modules.html
index 4c4d152..8fd492f 100644
--- a/api/modules.html
+++ b/api/modules.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="next" title="rds2py package" href="rds2py.html" /><link rel="prev" title="Changelog" href="../changelog.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -205,7 +205,7 @@ <h1>rds2py<a class="headerlink" href="#rds2py" title="Link to this heading">#</a
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="rds2py.html">rds2py package</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="rds2py.html#submodules">Submodules</a></li>
-<li class="toctree-l2"><a class="reference internal" href="rds2py.html#rds2py-core-module">rds2py.core module</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-rds2py.core">rds2py.core module</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.core.PyParsedObject"><code class="docutils literal notranslate"><span class="pre">PyParsedObject</span></code></a><ul>
 <li class="toctree-l4"><a class="reference internal" href="rds2py.html#rds2py.core.PyParsedObject.__new__"><code class="docutils literal notranslate"><span class="pre">PyParsedObject.__new__()</span></code></a></li>
 <li class="toctree-l4"><a class="reference internal" href="rds2py.html#rds2py.core.PyParsedObject.__reduce__"><code class="docutils literal notranslate"><span class="pre">PyParsedObject.__reduce__()</span></code></a></li>
@@ -237,24 +237,24 @@ <h1>rds2py<a class="headerlink" href="#rds2py" title="Link to this heading">#</a
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.core.__setstate_cython__"><code class="docutils literal notranslate"><span class="pre">__setstate_cython__()</span></code></a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="rds2py.html#rds2py-interface-module">rds2py.interface module</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-rds2py.interface">rds2py.interface module</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.interface.as_dense_matrix"><code class="docutils literal notranslate"><span class="pre">as_dense_matrix()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.interface.as_pandas"><code class="docutils literal notranslate"><span class="pre">as_pandas()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.interface.as_sparse_matrix"><code class="docutils literal notranslate"><span class="pre">as_sparse_matrix()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.interface.as_summarized_experiment"><code class="docutils literal notranslate"><span class="pre">as_summarized_experiment()</span></code></a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="rds2py.html#rds2py-parser-module">rds2py.parser module</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-rds2py.parser">rds2py.parser module</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.parser.get_class"><code class="docutils literal notranslate"><span class="pre">get_class()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.parser.read_rds"><code class="docutils literal notranslate"><span class="pre">read_rds()</span></code></a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="rds2py.html#rds2py-pdf-module">rds2py.pdf module</a><ul>
+<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-rds2py.pdf">rds2py.pdf module</a><ul>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.pdf.as_pandas_from_data_frame"><code class="docutils literal notranslate"><span class="pre">as_pandas_from_data_frame()</span></code></a></li>
 <li class="toctree-l3"><a class="reference internal" href="rds2py.html#rds2py.pdf.as_pandas_from_dframe"><code class="docutils literal notranslate"><span class="pre">as_pandas_from_dframe()</span></code></a></li>
 </ul>
 </li>
-<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-contents">Module contents</a></li>
+<li class="toctree-l2"><a class="reference internal" href="rds2py.html#module-rds2py">Module contents</a></li>
 </ul>
 </li>
 </ul>
@@ -310,7 +310,7 @@ <h1>rds2py<a class="headerlink" href="#rds2py" title="Link to this heading">#</a
       
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../_static/documentation_options.js?v=4621528c"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/api/rds2py.html b/api/rds2py.html
index f35f779..39a9a4a 100644
--- a/api/rds2py.html
+++ b/api/rds2py.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="../genindex.html" /><link rel="search" title="Search" href="../search.html" /><link rel="prev" title="rds2py" href="modules.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py package - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py package - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="../_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="../_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="../index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="../index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="../index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="../search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -204,9 +204,9 @@ <h1>rds2py package<a class="headerlink" href="#rds2py-package" title="Link to th
 <section id="submodules">
 <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this heading">#</a></h2>
 </section>
-<section id="rds2py-core-module">
-<h2>rds2py.core module<a class="headerlink" href="#rds2py-core-module" title="Link to this heading">#</a></h2>
-<dl class="py class" id="module-rds2py.core">
+<section id="module-rds2py.core">
+<span id="rds2py-core-module"></span><h2>rds2py.core module<a class="headerlink" href="#module-rds2py.core" title="Link to this heading">#</a></h2>
+<dl class="py class">
 <dt class="sig sig-object py" id="rds2py.core.PyParsedObject">
 <em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">rds2py.core.</span></span><span class="sig-name descname"><span class="pre">PyParsedObject</span></span><a class="headerlink" href="#rds2py.core.PyParsedObject" title="Link to this definition">#</a></dt>
 <dd><p>Bases: <a class="reference external" href="https://docs.python.org/3.9/library/functions.html#object" title="(in Python v3.9)"><code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></a></p>
@@ -336,9 +336,9 @@ <h2>rds2py.core module<a class="headerlink" href="#rds2py-core-module" title="Li
 <dd></dd></dl>
 
 </section>
-<section id="rds2py-interface-module">
-<h2>rds2py.interface module<a class="headerlink" href="#rds2py-interface-module" title="Link to this heading">#</a></h2>
-<dl class="py function" id="module-rds2py.interface">
+<section id="module-rds2py.interface">
+<span id="rds2py-interface-module"></span><h2>rds2py.interface module<a class="headerlink" href="#module-rds2py.interface" title="Link to this heading">#</a></h2>
+<dl class="py function">
 <dt class="sig sig-object py" id="rds2py.interface.as_dense_matrix">
 <span class="sig-prename descclassname"><span class="pre">rds2py.interface.</span></span><span class="sig-name descname"><span class="pre">as_dense_matrix</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em>, <em class="sig-param"><span class="n"><span class="pre">order</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.Literal" title="(in Python v3.9)"><span class="pre">Literal</span></a><span class="p"><span class="pre">[</span></span><span class="s"><span class="pre">'C'</span></span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="s"><span class="pre">'F'</span></span><span class="p"><span class="pre">]</span></span></span><span class="w"> </span><span class="o"><span class="pre">=</span></span><span class="w"> </span><span class="default_value"><span class="pre">'F'</span></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.25)"><span class="pre">ndarray</span></a></span></span><a class="reference internal" href="../_modules/rds2py/interface.html#as_dense_matrix"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.interface.as_dense_matrix" title="Link to this definition">#</a></dt>
 <dd><p>Read an R object as a <a class="reference external" href="https://numpy.org/doc/stable/reference/generated/numpy.ndarray.html#numpy.ndarray" title="(in NumPy v1.25)"><code class="xref py py-class docutils literal notranslate"><span class="pre">ndarray</span></code></a>.</p>
@@ -365,8 +365,8 @@ <h2>rds2py.interface module<a class="headerlink" href="#rds2py-interface-module"
 
 <dl class="py function">
 <dt class="sig sig-object py" id="rds2py.interface.as_pandas">
-<span class="sig-prename descclassname"><span class="pre">rds2py.interface.</span></span><span class="sig-name descname"><span class="pre">as_pandas</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.0.3)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/interface.html#as_pandas"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.interface.as_pandas" title="Link to this definition">#</a></dt>
-<dd><p>Read an R object as a <a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.0.3)"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataFrame</span></code></a>.</p>
+<span class="sig-prename descclassname"><span class="pre">rds2py.interface.</span></span><span class="sig-name descname"><span class="pre">as_pandas</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.1.0)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/interface.html#as_pandas"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.interface.as_pandas" title="Link to this definition">#</a></dt>
+<dd><p>Read an R object as a <a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.1.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataFrame</span></code></a>.</p>
 <p>Currently supports <code class="docutils literal notranslate"><span class="pre">DFrame</span></code> or <code class="docutils literal notranslate"><span class="pre">data.frame</span></code> class objects from R.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
@@ -410,9 +410,8 @@ <h2>rds2py.interface module<a class="headerlink" href="#rds2py-interface-module"
 <dl class="py function">
 <dt class="sig sig-object py" id="rds2py.interface.as_summarized_experiment">
 <span class="sig-prename descclassname"><span class="pre">rds2py.interface.</span></span><span class="sig-name descname"><span class="pre">as_summarized_experiment</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://biocpy.github.io/SummarizedExperiment/api/summarizedexperiment.html#summarizedexperiment.SummarizedExperiment.SummarizedExperiment" title="(in SummarizedExperiment v0.3.0)"><span class="pre">SummarizedExperiment</span></a><span class="w"> </span><span class="p"><span class="pre">|</span></span><span class="w"> </span><a class="reference external" href="https://biocpy.github.io/SingleCellExperiment/api/singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment" title="(in SingleCellExperiment v0.3.0)"><span class="pre">SingleCellExperiment</span></a></span></span><a class="reference internal" href="../_modules/rds2py/interface.html#as_summarized_experiment"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.interface.as_summarized_experiment" title="Link to this definition">#</a></dt>
-<dd><p>Read an R object as a
-<a class="reference external" href="https://biocpy.github.io/SingleCellExperiment/api/singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment" title="(in SingleCellExperiment v0.3.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">SingleCellExperiment</span></code></a>
-or <a class="reference external" href="https://biocpy.github.io/SummarizedExperiment/api/summarizedexperiment.html#summarizedexperiment.SummarizedExperiment.SummarizedExperiment" title="(in SummarizedExperiment v0.3.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">SummarizedExperiment</span></code></a>.</p>
+<dd><p>Read an R object as a <a class="reference external" href="https://biocpy.github.io/SingleCellExperiment/api/singlecellexperiment.html#singlecellexperiment.SingleCellExperiment.SingleCellExperiment" title="(in SingleCellExperiment v0.3.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">SingleCellExperiment</span></code></a> or
+<a class="reference external" href="https://biocpy.github.io/SummarizedExperiment/api/summarizedexperiment.html#summarizedexperiment.SummarizedExperiment.SummarizedExperiment" title="(in SummarizedExperiment v0.3.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">SummarizedExperiment</span></code></a>.</p>
 <p>Note: This function demonstrates how to parse a complex RDS object.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
@@ -440,9 +439,9 @@ <h2>rds2py.interface module<a class="headerlink" href="#rds2py-interface-module"
 </dd></dl>
 
 </section>
-<section id="rds2py-parser-module">
-<h2>rds2py.parser module<a class="headerlink" href="#rds2py-parser-module" title="Link to this heading">#</a></h2>
-<dl class="py function" id="module-rds2py.parser">
+<section id="module-rds2py.parser">
+<span id="rds2py-parser-module"></span><h2>rds2py.parser module<a class="headerlink" href="#module-rds2py.parser" title="Link to this heading">#</a></h2>
+<dl class="py function">
 <dt class="sig sig-object py" id="rds2py.parser.get_class">
 <span class="sig-prename descclassname"><span class="pre">rds2py.parser.</span></span><span class="sig-name descname"><span class="pre">get_class</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://docs.python.org/3.9/library/stdtypes.html#str" title="(in Python v3.9)"><span class="pre">str</span></a></span></span><a class="reference internal" href="../_modules/rds2py/parser.html#get_class"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.parser.get_class" title="Link to this definition">#</a></dt>
 <dd><p>Generic method to get the class information of the R object.</p>
@@ -478,12 +477,12 @@ <h2>rds2py.parser module<a class="headerlink" href="#rds2py-parser-module" title
 </dd></dl>
 
 </section>
-<section id="rds2py-pdf-module">
-<h2>rds2py.pdf module<a class="headerlink" href="#rds2py-pdf-module" title="Link to this heading">#</a></h2>
-<dl class="py function" id="module-rds2py.pdf">
+<section id="module-rds2py.pdf">
+<span id="rds2py-pdf-module"></span><h2>rds2py.pdf module<a class="headerlink" href="#module-rds2py.pdf" title="Link to this heading">#</a></h2>
+<dl class="py function">
 <dt class="sig sig-object py" id="rds2py.pdf.as_pandas_from_data_frame">
-<span class="sig-prename descclassname"><span class="pre">rds2py.pdf.</span></span><span class="sig-name descname"><span class="pre">as_pandas_from_data_frame</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.0.3)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/pdf.html#as_pandas_from_data_frame"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.pdf.as_pandas_from_data_frame" title="Link to this definition">#</a></dt>
-<dd><p>Read an R object to a <a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.0.3)"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataFrame</span></code></a>.</p>
+<span class="sig-prename descclassname"><span class="pre">rds2py.pdf.</span></span><span class="sig-name descname"><span class="pre">as_pandas_from_data_frame</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.1.0)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/pdf.html#as_pandas_from_data_frame"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.pdf.as_pandas_from_data_frame" title="Link to this definition">#</a></dt>
+<dd><p>Read an R object to a <a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.1.0)"><code class="xref py py-class docutils literal notranslate"><span class="pre">DataFrame</span></code></a>.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><p><strong>robj</strong> (<em>MutableMapping</em>) – Object parsed from the <cite>RDS</cite> file.
@@ -503,8 +502,8 @@ <h2>rds2py.pdf module<a class="headerlink" href="#rds2py-pdf-module" title="Link
 
 <dl class="py function">
 <dt class="sig sig-object py" id="rds2py.pdf.as_pandas_from_dframe">
-<span class="sig-prename descclassname"><span class="pre">rds2py.pdf.</span></span><span class="sig-name descname"><span class="pre">as_pandas_from_dframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.0.3)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/pdf.html#as_pandas_from_dframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.pdf.as_pandas_from_dframe" title="Link to this definition">#</a></dt>
-<dd><p>Convert a realized R object to a pandas data frame representation</p>
+<span class="sig-prename descclassname"><span class="pre">rds2py.pdf.</span></span><span class="sig-name descname"><span class="pre">as_pandas_from_dframe</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">robj</span></span><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="n"><a class="reference external" href="https://docs.python.org/3.9/library/typing.html#typing.MutableMapping" title="(in Python v3.9)"><span class="pre">MutableMapping</span></a></span></em><span class="sig-paren">)</span> <span class="sig-return"><span class="sig-return-icon">&#x2192;</span> <span class="sig-return-typehint"><a class="reference external" href="https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.html#pandas.DataFrame" title="(in pandas v2.1.0)"><span class="pre">DataFrame</span></a></span></span><a class="reference internal" href="../_modules/rds2py/pdf.html#as_pandas_from_dframe"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#rds2py.pdf.as_pandas_from_dframe" title="Link to this definition">#</a></dt>
+<dd><p>Convert a realized R object to a pandas data frame representation.</p>
 <dl class="field-list simple">
 <dt class="field-odd">Parameters<span class="colon">:</span></dt>
 <dd class="field-odd"><p><strong>robj</strong> (<em>MutableMapping</em>) – Object parsed from the <cite>RDS</cite> file.
@@ -523,9 +522,9 @@ <h2>rds2py.pdf module<a class="headerlink" href="#rds2py-pdf-module" title="Link
 </dd></dl>
 
 </section>
-<section id="module-contents">
-<h2>Module contents<a class="headerlink" href="#module-contents" title="Link to this heading">#</a></h2>
-<span class="target" id="module-rds2py"></span></section>
+<section id="module-rds2py">
+<span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-rds2py" title="Link to this heading">#</a></h2>
+</section>
 </section>
 
         </article>
@@ -577,7 +576,7 @@ <h2>Module contents<a class="headerlink" href="#module-contents" title="Link to
             <ul>
 <li><a class="reference internal" href="#">rds2py package</a><ul>
 <li><a class="reference internal" href="#submodules">Submodules</a></li>
-<li><a class="reference internal" href="#rds2py-core-module">rds2py.core module</a><ul>
+<li><a class="reference internal" href="#module-rds2py.core">rds2py.core module</a><ul>
 <li><a class="reference internal" href="#rds2py.core.PyParsedObject"><code class="docutils literal notranslate"><span class="pre">PyParsedObject</span></code></a><ul>
 <li><a class="reference internal" href="#rds2py.core.PyParsedObject.__new__"><code class="docutils literal notranslate"><span class="pre">PyParsedObject.__new__()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.core.PyParsedObject.__reduce__"><code class="docutils literal notranslate"><span class="pre">PyParsedObject.__reduce__()</span></code></a></li>
@@ -609,24 +608,24 @@ <h2>Module contents<a class="headerlink" href="#module-contents" title="Link to
 <li><a class="reference internal" href="#rds2py.core.__setstate_cython__"><code class="docutils literal notranslate"><span class="pre">__setstate_cython__()</span></code></a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#rds2py-interface-module">rds2py.interface module</a><ul>
+<li><a class="reference internal" href="#module-rds2py.interface">rds2py.interface module</a><ul>
 <li><a class="reference internal" href="#rds2py.interface.as_dense_matrix"><code class="docutils literal notranslate"><span class="pre">as_dense_matrix()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.interface.as_pandas"><code class="docutils literal notranslate"><span class="pre">as_pandas()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.interface.as_sparse_matrix"><code class="docutils literal notranslate"><span class="pre">as_sparse_matrix()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.interface.as_summarized_experiment"><code class="docutils literal notranslate"><span class="pre">as_summarized_experiment()</span></code></a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#rds2py-parser-module">rds2py.parser module</a><ul>
+<li><a class="reference internal" href="#module-rds2py.parser">rds2py.parser module</a><ul>
 <li><a class="reference internal" href="#rds2py.parser.get_class"><code class="docutils literal notranslate"><span class="pre">get_class()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.parser.read_rds"><code class="docutils literal notranslate"><span class="pre">read_rds()</span></code></a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#rds2py-pdf-module">rds2py.pdf module</a><ul>
+<li><a class="reference internal" href="#module-rds2py.pdf">rds2py.pdf module</a><ul>
 <li><a class="reference internal" href="#rds2py.pdf.as_pandas_from_data_frame"><code class="docutils literal notranslate"><span class="pre">as_pandas_from_data_frame()</span></code></a></li>
 <li><a class="reference internal" href="#rds2py.pdf.as_pandas_from_dframe"><code class="docutils literal notranslate"><span class="pre">as_pandas_from_dframe()</span></code></a></li>
 </ul>
 </li>
-<li><a class="reference internal" href="#module-contents">Module contents</a></li>
+<li><a class="reference internal" href="#module-rds2py">Module contents</a></li>
 </ul>
 </li>
 </ul>
@@ -638,7 +637,7 @@ <h2>Module contents<a class="headerlink" href="#module-contents" title="Link to
       
     </aside>
   </div>
-</div><script src="../_static/documentation_options.js?v=e259d695"></script>
+</div><script src="../_static/documentation_options.js?v=4621528c"></script>
     <script src="../_static/doctools.js?v=888ff710"></script>
     <script src="../_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="../_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/authors.html b/authors.html
index 457cc73..d023580 100644
--- a/authors.html
+++ b/authors.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Changelog" href="changelog.html" /><link rel="prev" title="License" href="license.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Contributors - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>Contributors - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -255,7 +255,7 @@ <h1>Contributors<a class="headerlink" href="#contributors" title="Link to this h
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/changelog.html b/changelog.html
index e7b1d5b..4abc63e 100644
--- a/changelog.html
+++ b/changelog.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="rds2py" href="api/modules.html" /><link rel="prev" title="Contributors" href="authors.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Changelog - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>Changelog - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -203,7 +203,10 @@
 <h1>Changelog<a class="headerlink" href="#changelog" title="Link to this heading">#</a></h1>
 <section id="version-0-3-0-development">
 <h2>Version 0.3.0 (development)<a class="headerlink" href="#version-0-3-0-development" title="Link to this heading">#</a></h2>
-<p>A few changes to update pyscaffold, development environment and link sphinx objects to relevant objects.</p>
+<p>This release migrates the package to a more palatable Google’s Python style guide. A major modification to the package is with casing, all <code class="docutils literal notranslate"><span class="pre">camelCase</span></code> properties, methods, functions and parameters are now <code class="docutils literal notranslate"><span class="pre">snake_case</span></code>.</p>
+<p>In addition, docstrings and documentation has been updated to use sphinx’s features of linking objects to their types. Sphinx now also documents private and special dunder methods (e.g. <code class="docutils literal notranslate"><span class="pre">__getitem__</span></code>, <code class="docutils literal notranslate"><span class="pre">__copy__</span></code> etc). Intersphinx has been updated to link to references from dependent packages.</p>
+<p>Configuration for flake8, ruff and black has been added to pyproject.toml and setup.cfg to be less annoying.</p>
+<p>Finally, pyscaffold has been updated to use “myst-parser” as the markdown compiler instead of recommonmark. As part of the pyscaffold setup, one may use pre-commits to run some of the routine tasks of linting and formatting before every commit. While this is sometimes annoying and can be ignored with <code class="docutils literal notranslate"><span class="pre">--no-verify</span></code>, it brings some consistency to the code base.</p>
 </section>
 <section id="version-0-1">
 <h2>Version 0.1<a class="headerlink" href="#version-0-1" title="Link to this heading">#</a></h2>
@@ -284,7 +287,7 @@ <h2>Version 0.1<a class="headerlink" href="#version-0-1" title="Link to this hea
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/contributing.html b/contributing.html
index fd6e2e7..8a8cde7 100644
--- a/contributing.html
+++ b/contributing.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="License" href="license.html" /><link rel="prev" title="Tutorial" href="tutorial.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>Contributing - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>Contributing - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -520,7 +520,7 @@ <h3>Releases<a class="headerlink" href="#releases" title="Link to this heading">
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/genindex.html b/genindex.html
index e3ac732..cb486b1 100644
--- a/genindex.html
+++ b/genindex.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="#" /><link rel="search" title="Search" href="search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 --><title>Index - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 --><title>Index - rds2py 0.3.1 documentation</title>
 <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -121,7 +121,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -144,7 +144,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -439,7 +439,7 @@ <h2>S</h2>
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/index.html b/index.html
index 7c9d752..f562fb0 100644
--- a/index.html
+++ b/index.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="rds2py" href="readme.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="#"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="#"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="#">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -317,7 +317,7 @@ <h2>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Li
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/license.html b/license.html
index e8494bf..2d0645f 100644
--- a/license.html
+++ b/license.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Contributors" href="authors.html" /><link rel="prev" title="Contributing" href="contributing.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>License - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>License - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -275,7 +275,7 @@ <h1>License<a class="headerlink" href="#license" title="Link to this heading">#<
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/objects.inv b/objects.inv
index bc506e18b5e234e57a850201253bd868ebeeca66..0e9bdefa2d3e507621c6342349d2f9c0d02a1502 100644
GIT binary patch
delta 12
TcmZ3*x{7sz9i!n!`)nov8j=IN

delta 12
TcmZ3*x{7sz9izcU`)nov8jS<H

diff --git a/py-modindex.html b/py-modindex.html
index f4d1f2c..467ac48 100644
--- a/py-modindex.html
+++ b/py-modindex.html
@@ -4,7 +4,7 @@
     <meta name="viewport" content="width=device-width,initial-scale=1"/>
     <meta name="color-scheme" content="light dark"><link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 --><title>Python Module Index - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 --><title>Python Module Index - rds2py 0.3.1 documentation</title>
 <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -121,7 +121,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -144,7 +144,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -272,7 +272,7 @@ <h1>Python Module Index</h1>
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
     <script src="_static/doctools.js?v=888ff710"></script>
     <script src="_static/sphinx_highlight.js?v=dc90522c"></script>
     <script src="_static/scripts/furo.js?v=32e29ea5"></script>
diff --git a/readme.html b/readme.html
index c4b1b5a..d76cf72 100644
--- a/readme.html
+++ b/readme.html
@@ -5,8 +5,8 @@
     <meta name="color-scheme" content="light dark"><meta name="viewport" content="width=device-width, initial-scale=1" />
 <link rel="index" title="Index" href="genindex.html" /><link rel="search" title="Search" href="search.html" /><link rel="next" title="Tutorial" href="tutorial.html" /><link rel="prev" title="rds2py" href="index.html" />
 
-    <!-- Generated with Sphinx 7.2.2 and Furo 2023.08.19 -->
-        <title>rds2py - rds2py 0.3.0 documentation</title>
+    <!-- Generated with Sphinx 7.2.5 and Furo 2023.08.19 -->
+        <title>rds2py - rds2py 0.3.1 documentation</title>
       <link rel="stylesheet" type="text/css" href="_static/pygments.css?v=fa44fd50" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo.css?v=135e06be" />
     <link rel="stylesheet" type="text/css" href="_static/styles/furo-extensions.css?v=36a5483c" />
@@ -123,7 +123,7 @@
       </label>
     </div>
     <div class="header-center">
-      <a href="index.html"><div class="brand">rds2py 0.3.0 documentation</div></a>
+      <a href="index.html"><div class="brand">rds2py 0.3.1 documentation</div></a>
     </div>
     <div class="header-right">
       <div class="theme-toggle-container theme-toggle-header">
@@ -146,7 +146,7 @@
       <div class="sidebar-sticky"><a class="sidebar-brand" href="index.html">
   
   
-  <span class="sidebar-brand-text">rds2py 0.3.0 documentation</span>
+  <span class="sidebar-brand-text">rds2py 0.3.1 documentation</span>
   
 </a><form class="sidebar-search-container" method="get" action="search.html" role="search">
   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -199,7 +199,10 @@
           </label>
         </div>
         <article role="main">
-          <section class="tex2jax_ignore mathjax_ignore" id="rds2py">
+          <p><a class="reference external" href="https://pyscaffold.org/"><img alt="Project generated with PyScaffold" src="https://img.shields.io/badge/-PyScaffold-005CA0?logo=pyscaffold" /></a>
+<a class="reference external" href="https://pypi.org/project/rds2py/"><img alt="PyPI-Server" src="https://img.shields.io/pypi/v/rds2py.svg" /></a>
+<img alt="Unit tests" src="https://github.com/BiocPy/rds2py/actions/workflows/pypi-test.yml/badge.svg" /></p>
+<section class="tex2jax_ignore mathjax_ignore" id="rds2py">
 <h1>rds2py<a class="headerlink" href="#rds2py" title="Link to this heading">#</a></h1>
 <p>Parse and construct Python representations for datasets stored in RDS files. <code class="docutils literal notranslate"><span class="pre">rds2py</span></code> supports a few base classes from R and Bioconductor’s <code class="docutils literal notranslate"><span class="pre">SummarizedExperiment</span></code> and <code class="docutils literal notranslate"><span class="pre">SingleCellExperiment</span></code> S4 classes. <strong><em>This is possible because of <a class="reference external" href="https://github.com/LTLA/rds2cpp">Aaron’s rds2cpp library</a>.</em></strong></p>
 <p>The package uses memory views (except for strings) to access the same memory from C++ in Python (through Cython of course). This is especially useful for large datasets so we don’t make multiple copies of data.</p>
@@ -332,7 +335,7 @@ <h2>Note<a class="headerlink" href="#note" title="Link to this heading">#</a></h
       
     </aside>
   </div>
-</div><script src="_static/documentation_options.js?v=e259d695"></script>
+</div><script src="_static/documentation_options.js?v=4621528c"></script>
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diff --git a/tutorial.html b/tutorial.html
index e58493b..f4b20ec 100644
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   <input class="sidebar-search" placeholder="Search" name="q" aria-label="Search">
@@ -333,7 +333,7 @@ <h3>S4 classes: specifically <code class="docutils literal notranslate"><span cl
       
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