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Rsamtools with multiple threads? #55

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junjunlab opened this issue May 11, 2023 · 2 comments
Open

Rsamtools with multiple threads? #55

junjunlab opened this issue May 11, 2023 · 2 comments

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@junjunlab
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Hi, can Rsamtools run with multiple threads? Thanks!
@PeteHaitch
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If you look at ?Rsamtools::scanBam and scroll through the various functions documented on the corresponding help page you'll find that Rsamtools::sortBam() supports a nThreads argument (requested in #46).

Searching on GitHub through the package code for nthreads seems to show that it is only this function that supports multiple threads.

@junjunlab
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Thanks, I will check it out.

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@PeteHaitch @junjunlab