[BioC2024] Phantasus package demo

[bioc-workshop-dev]

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  id='tidybioc2023'
  title='Tidy Transcriptomics'
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Additional Workshop Information

Expected Number of Participants: 0

Workshop Date(s): July 10, 2024 - July 10, 2024

Workshop Start Time (approx.): 19:15

[bioc-workshop-dev]

READ ONLY: DO NOT EDIT ## /request id="phantasusbioc2024" title="Phantasus package demo" description="This phantasus package demo for BioC 2024 conference" section="BioC2024" startfile="README.md" source="https://github.com/assaron/phantasusPkgDemo" docker="ghcr.io/assaron/phnatasuspkgdemo:latest" pkglist="" vignettes=""

[almahmoud]

/request id="phantasusbioc2024" title="Phantasus package demo" description="phantasus package demo for BioC 2024 conference" section="BioC2024" source="https://github.com/assaron/phantasusPkgDemo" docker="ghcr.io/assaron/phnatasuspkgdemo:latest"

[almahmoud]

AUTO-GENERATED RESPONSE
Your request has been received but is currently failing initial screening.
Please retry your request ensuring all parameters are passed in correctly.

[almahmoud]

@assaron The GHCR image in your repository is not currently public. You may follow instructions at https://docs.github.com/en/packages/learn-github-packages/configuring-a-packages-access-control-and-visibility#configuring-access-to-packages-for-your-personal-account to make it public. Let me know if you need help!

[assaron]

@almahmoud I've changed the container visibility to public (I thought it should automatically switch when I made the repository public, but it didn't).

/request id="phantasusbioc2024" title="Phantasus package demo" description="phantasus package demo for BioC 2024 conference" section="BioC2024" source="https://github.com/assaron/phantasusPkgDemo" docker="ghcr.io/assaron/phnatasuspkgdemo:latest"

[almahmoud]

/test id="phantasusbioc2024" title="Package demo: phantasus" description="visual and interactive gene expression analysis with phantasus package" section="BioC2024" source="https://github.com/assaron/phantasusPkgDemo" docker="ghcr.io/assaron/phnatasuspkgdemo:latest"

[almahmoud]

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[almahmoud]

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[almahmoud]

/test id="phantasusbioc2024" title="Package demo: phantasus" description="visual and interactive gene expression analysis with phantasus package" section="BioC2024" source="https://github.com/assaron/phantasusPkgDemo" docker="ghcr.io/assaron/phantasuspkgdemo:latest"

[almahmoud]

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[assaron]

@almahmoud my understanding is that docker buildx imagetools inspect ghcr.io/assaron/phnatasuspkgdemo:latest was returning error that caused trouble. I'm rerunning docker build action in GitHub, hopefully after rebuild and new push the access will be set properly everywhere.

[almahmoud]

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Your workshop has been successfully deployed to the test instance. ✨
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[assaron]

docker buildx is still failing, maybe GitHub is caching it somewhere. But I see you made it work anyway, thank you!

[assaron]

@almahmoud Can you please make vignettes/phantasusPkgDemo.Rmd to be the file which is opened on a new session?

[almahmoud]

Done!

[assaron]

Thanks!