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Cannot connect to ExperimentHub server #601

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bailey28 opened this issue Sep 26, 2023 · 0 comments
Open

Cannot connect to ExperimentHub server #601

bailey28 opened this issue Sep 26, 2023 · 0 comments

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@bailey28
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GDCdownload(
query = query.met,
files.per.chunk = 20,
directory = "case3/GDCdata"
)
acc.met <- GDCprepare(
query = query.met,
save = FALSE,
directory = "case3/GDCdata",
)

Creating a SummarizedExperiment from DNA methylation input
Accessing DNAm annotation from sesame package for: hg38 - HM450
Cannot connect to ExperimentHub server, using 'localHub=TRUE' instead
Using 'localHub=TRUE'
If offline, please also see BiocManager vignette section on offline use
Error in .updateHubDB(hub_bfc, .class, url, proxy, localHub) :
Invalid Cache: sqlite file
Hub has not been added to cache
Run again with 'localHub=FALSE'

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