From 2087de5e14248c5ad8a0e1bf0d9730a9e96b8cb3 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 15:58:28 +0000
Subject: [PATCH 01/10] Add a python hugr package

---
 .gitignore                                    | 144 ++++-
 justfile                                      |  18 +
 poetry.lock                                   | 570 ++++++++++++++++++
 pyproject.toml                                |  25 +
 quantinuum-hugr-py/README.md                  |  51 ++
 quantinuum-hugr-py/pyproject.toml             |  25 +
 .../src/quantinuum_hugr/__init__.py           |   8 +
 quantinuum-hugr-py/tests/__init__.py          |   0
 .../tests/serialization/__init__.py           |   0
 .../tests/serialization/test_basic.py         |   3 +
 10 files changed, 843 insertions(+), 1 deletion(-)
 create mode 100644 poetry.lock
 create mode 100644 pyproject.toml
 create mode 100644 quantinuum-hugr-py/README.md
 create mode 100644 quantinuum-hugr-py/pyproject.toml
 create mode 100644 quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
 create mode 100644 quantinuum-hugr-py/tests/__init__.py
 create mode 100644 quantinuum-hugr-py/tests/serialization/__init__.py
 create mode 100644 quantinuum-hugr-py/tests/serialization/test_basic.py

diff --git a/.gitignore b/.gitignore
index 1b0b35659..2d97d91f0 100644
--- a/.gitignore
+++ b/.gitignore
@@ -24,4 +24,146 @@ devenv.local.nix
 .pre-commit-config.yaml
 
 # Coverage report
-lcov.info
\ No newline at end of file
+lcov.info
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Translations
+*.mo
+*.pot
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# pdm
+#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
+#pdm.lock
+#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
+#   in version control.
+#   https://pdm.fming.dev/#use-with-ide
+.pdm.toml
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
diff --git a/justfile b/justfile
index bc395e953..d950f63f2 100644
--- a/justfile
+++ b/justfile
@@ -17,7 +17,25 @@ check:
 # Format the code
 format:
     cargo fmt
+    poetry run ruff format
 
 # Generate a test coverage report
 coverage:
     cargo llvm-cov --lcov > lcov.info
+
+# Run pre-commit checks on the python code
+pycheck:
+    poetry run ruff format --check
+    poetry run ruff check
+
+# Load a poetry shell with the dependencies installed
+pyshell:
+    poetry install
+
+# Run the python tests
+pytest:
+    poetry run pytest
+
+# Generate a python test coverage report
+pycoverage:
+    poetry run pytest --cov=./ --cov-report=html
diff --git a/poetry.lock b/poetry.lock
new file mode 100644
index 000000000..9673c1a89
--- /dev/null
+++ b/poetry.lock
@@ -0,0 +1,570 @@
+# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand.
+
+[[package]]
+name = "colorama"
+version = "0.4.6"
+description = "Cross-platform colored terminal text."
+optional = false
+python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7"
+files = [
+    {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"},
+    {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"},
+]
+
+[[package]]
+name = "coverage"
+version = "7.4.4"
+description = "Code coverage measurement for Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "coverage-7.4.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:e0be5efd5127542ef31f165de269f77560d6cdef525fffa446de6f7e9186cfb2"},
+    {file = "coverage-7.4.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:ccd341521be3d1b3daeb41960ae94a5e87abe2f46f17224ba5d6f2b8398016cf"},
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+
+[package.dependencies]
+tomli = {version = "*", optional = true, markers = "python_full_version <= \"3.11.0a6\" and extra == \"toml\""}
+
+[package.extras]
+toml = ["tomli"]
+
+[[package]]
+name = "exceptiongroup"
+version = "1.2.0"
+description = "Backport of PEP 654 (exception groups)"
+optional = false
+python-versions = ">=3.7"
+files = [
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+[package.extras]
+test = ["pytest (>=6)"]
+
+[[package]]
+name = "graphviz"
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+description = "Simple Python interface for Graphviz"
+optional = false
+python-versions = ">=3.8"
+files = [
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+[package.extras]
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+docs = ["sphinx (>=5,<7)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
+test = ["coverage", "pytest (>=7,<8.1)", "pytest-cov", "pytest-mock (>=3)"]
+
+[[package]]
+name = "iniconfig"
+version = "2.0.0"
+description = "brain-dead simple config-ini parsing"
+optional = false
+python-versions = ">=3.7"
+files = [
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+]
+
+[[package]]
+name = "jinja2"
+version = "3.1.3"
+description = "A very fast and expressive template engine."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"},
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+]
+
+[package.dependencies]
+MarkupSafe = ">=2.0"
+
+[package.extras]
+i18n = ["Babel (>=2.7)"]
+
+[[package]]
+name = "lark-parser"
+version = "0.12.0"
+description = "a modern parsing library"
+optional = false
+python-versions = "*"
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+    {file = "scipy-1.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:b360f1b6b2f742781299514e99ff560d1fe9bd1bff2712894b52abe528d1fd1e"},
+    {file = "scipy-1.12.0.tar.gz", hash = "sha256:4bf5abab8a36d20193c698b0f1fc282c1d083c94723902c447e5d2f1780936a3"},
+]
+
+[package.dependencies]
+numpy = ">=1.22.4,<1.29.0"
+
+[package.extras]
+dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
+doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
+test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
+
+[[package]]
+name = "setuptools"
+version = "69.2.0"
+description = "Easily download, build, install, upgrade, and uninstall Python packages"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "setuptools-69.2.0-py3-none-any.whl", hash = "sha256:c21c49fb1042386df081cb5d86759792ab89efca84cf114889191cd09aacc80c"},
+    {file = "setuptools-69.2.0.tar.gz", hash = "sha256:0ff4183f8f42cd8fa3acea16c45205521a4ef28f73c6391d8a25e92893134f2e"},
+]
+
+[package.extras]
+docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
+testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
+testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
+
+[[package]]
+name = "sympy"
+version = "1.12"
+description = "Computer algebra system (CAS) in Python"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "sympy-1.12-py3-none-any.whl", hash = "sha256:c3588cd4295d0c0f603d0f2ae780587e64e2efeedb3521e46b9bb1d08d184fa5"},
+    {file = "sympy-1.12.tar.gz", hash = "sha256:ebf595c8dac3e0fdc4152c51878b498396ec7f30e7a914d6071e674d49420fb8"},
+]
+
+[package.dependencies]
+mpmath = ">=0.19"
+
+[[package]]
+name = "tomli"
+version = "2.0.1"
+description = "A lil' TOML parser"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "tomli-2.0.1-py3-none-any.whl", hash = "sha256:939de3e7a6161af0c887ef91b7d41a53e7c5a1ca976325f429cb46ea9bc30ecc"},
+    {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
+]
+
+[[package]]
+name = "types-pkg-resources"
+version = "0.1.3"
+description = "Typing stubs for pkg_resources"
+optional = false
+python-versions = "*"
+files = [
+    {file = "types-pkg_resources-0.1.3.tar.gz", hash = "sha256:834a9b8d3dbea343562fd99d5d3359a726f6bf9d3733bccd2b4f3096fbab9dae"},
+    {file = "types_pkg_resources-0.1.3-py2.py3-none-any.whl", hash = "sha256:0cb9972cee992249f93fff1a491bf2dc3ce674e5a1926e27d4f0866f7d9b6d9c"},
+]
+
+[[package]]
+name = "typing-extensions"
+version = "4.10.0"
+description = "Backported and Experimental Type Hints for Python 3.8+"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "typing_extensions-4.10.0-py3-none-any.whl", hash = "sha256:69b1a937c3a517342112fb4c6df7e72fc39a38e7891a5730ed4985b5214b5475"},
+    {file = "typing_extensions-4.10.0.tar.gz", hash = "sha256:b0abd7c89e8fb96f98db18d86106ff1d90ab692004eb746cf6eda2682f91b3cb"},
+]
+
+[metadata]
+lock-version = "2.0"
+python-versions = "^3.10"
+content-hash = "848bd58a1c4f66c25a9448603965536edfe0467e87592e871e5c971b6e3b120c"
diff --git a/pyproject.toml b/pyproject.toml
new file mode 100644
index 000000000..e87750139
--- /dev/null
+++ b/pyproject.toml
@@ -0,0 +1,25 @@
+[tool.poetry]
+description = "Namespace for the python packages in the HUGR repository. See the individual packages for more information."
+name = "hugr-project"
+version = "0.0.0"
+authors = []
+readme = "README.md"
+packages = []
+
+package-mode = false
+
+[tool.poetry.group.main.dependencies]
+python = "^3.10"
+
+[tool.poetry.group.dev.dependencies]
+pytket = "*"
+pytest = "^7.1.2"
+pytest-cov = "^4.1.0"
+ruff = "^0.1.3"
+
+[tool.poetry.group.quantinuum-hugr.dependencies]
+quantinuum-hugr = { path = "quantinuum-hugr-py", develop = true }
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"
diff --git a/quantinuum-hugr-py/README.md b/quantinuum-hugr-py/README.md
new file mode 100644
index 000000000..fc7e0b8ed
--- /dev/null
+++ b/quantinuum-hugr-py/README.md
@@ -0,0 +1,51 @@
+quantinuum-hugr
+===============
+
+[![build_status][]](https://github.com/CQCL/hugr/actions)
+[![codecov][]](https://codecov.io/gh/CQCL/hugr)
+
+The Hierarchical Unified Graph Representation (HUGR, pronounced _hugger_) is the
+common representation of quantum circuits and operations in the Quantinuum
+ecosystem.
+
+This library provides a pure-python implementation of the HUGR data model, and
+a low-level API for constructing HUGR objects.
+
+This library is intended to be used as a dependency for other high-level tools.
+See [`guppylang`][] and [`tket2`][] for examples of such tools.
+
+The HUGR specification is [here](https://github.com/CQCL/hugr/blob/main/specification/hugr.md).
+
+  [`guppylang`]: https://pypi.org/project/guppylang/
+  [`tket2`]: https://github.com/CQCL/tket2
+
+
+## Install
+
+`quantinuum-hugr` can be installed via `pip`. Requires Python >= 3.10.
+
+```sh
+pip install quantinuum-hugr
+```
+
+## Usage
+
+TODO
+
+## Recent Changes
+
+See [CHANGELOG][] for a list of changes. The minimum supported rust
+version will only change on major releases.
+
+## Development
+
+See [DEVELOPMENT.md](https://github.com/CQCL/hugr/blob/main/DEVELOPMENT.md) for instructions on setting up the development environment.
+
+## License
+
+This project is licensed under Apache License, Version 2.0 ([LICENSE][] or http://www.apache.org/licenses/LICENSE-2.0).
+
+  [build_status]: https://github.com/CQCL/hugr/workflows/Continuous%20integration/badge.svg?branch=main
+  [codecov]: https://img.shields.io/codecov/c/gh/CQCL/hugr?logo=codecov
+  [LICENSE]: https://github.com/CQCL/hugr/blob/main/LICENCE
+  [CHANGELOG]: https://github.com/CQCL/hugr/blob/main/quantinuum-hugr-py/CHANGELOG.md
diff --git a/quantinuum-hugr-py/pyproject.toml b/quantinuum-hugr-py/pyproject.toml
new file mode 100644
index 000000000..588c8c65b
--- /dev/null
+++ b/quantinuum-hugr-py/pyproject.toml
@@ -0,0 +1,25 @@
+[tool.poetry]
+name = "quantinuum_hugr"
+version = "0.0.0"
+description = "Quantinuum's common representation of quantum circuits and operations"
+classifiers = []                                                                      # TODO
+keywords = []                                                                         # TODO
+authors = []                                                                          # TODO
+maintainers = []                                                                      # TODO
+license = "Apache-2.0"
+readme = "README.md"
+homepage = "https://github.com/CQCL/hugr"
+repository = "https://github.com/CQCL/hugr"
+
+[tool.poetry.dependencies]
+python = ">=3.10"
+
+[tool.poetry.group.dev.dependencies]
+pytket = "*"
+pytest = "^7.1.2"
+pytest-cov = "^4.1.0"
+ruff = "^0.1.3"
+
+[tool.pytest.ini_options]
+# Lark throws deprecation warnings for `src_parse` and `src_constants`.
+filterwarnings = "ignore::DeprecationWarning:lark.*"
diff --git a/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py b/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
new file mode 100644
index 000000000..b001ec7a1
--- /dev/null
+++ b/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
@@ -0,0 +1,8 @@
+"""`quantinuum-hugr` is a Python package for the Quantinuum Hugr common
+representation.
+"""
+
+
+def it_works() -> str:
+    """Return a string to confirm that the package is installed and working."""
+    return "It works!"
diff --git a/quantinuum-hugr-py/tests/__init__.py b/quantinuum-hugr-py/tests/__init__.py
new file mode 100644
index 000000000..e69de29bb
diff --git a/quantinuum-hugr-py/tests/serialization/__init__.py b/quantinuum-hugr-py/tests/serialization/__init__.py
new file mode 100644
index 000000000..e69de29bb
diff --git a/quantinuum-hugr-py/tests/serialization/test_basic.py b/quantinuum-hugr-py/tests/serialization/test_basic.py
new file mode 100644
index 000000000..e29fd40c0
--- /dev/null
+++ b/quantinuum-hugr-py/tests/serialization/test_basic.py
@@ -0,0 +1,3 @@
+def test_it_works():
+    """TODO: Replace this with a real test."""
+    assert 2 + 2 != "🐟"

From 6b7697a2a82b3b6fbb64e6522c1f9f9b517e4199 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 16:11:26 +0000
Subject: [PATCH 02/10] Setup CI

---
 .github/pre-commit                      | 17 +++++
 .github/workflows/ci-python-skip.yml    | 26 +++++++
 .github/workflows/ci-python.yml         | 90 +++++++++++++++++++++++++
 .github/workflows/ci-rs-skip.yml        | 34 ++++++++++
 .github/workflows/{ci.yml => ci-rs.yml} |  9 ++-
 .gitignore                              |  3 +
 justfile                                |  8 +--
 7 files changed, 179 insertions(+), 8 deletions(-)
 create mode 100644 .github/workflows/ci-python-skip.yml
 create mode 100644 .github/workflows/ci-python.yml
 create mode 100644 .github/workflows/ci-rs-skip.yml
 rename .github/workflows/{ci.yml => ci-rs.yml} (95%)

diff --git a/.github/pre-commit b/.github/pre-commit
index d76935698..66fa30775 100755
--- a/.github/pre-commit
+++ b/.github/pre-commit
@@ -28,4 +28,21 @@ then
     exit 1
 fi
 
+# Run `ruff` python formatting
+if ! poetry run ruff format --check
+then
+    echo ""
+    echo "There are some python code style issues."
+    echo "Run `ruff format` first."
+    exit 1
+fi
+
+# Run `ruff` python linting
+if ! poetry run ruff check
+then
+    echo ""
+    echo "There are some python linting issues."
+    exit 1
+fi
+
 exit 0
diff --git a/.github/workflows/ci-python-skip.yml b/.github/workflows/ci-python-skip.yml
new file mode 100644
index 000000000..b67ad143e
--- /dev/null
+++ b/.github/workflows/ci-python-skip.yml
@@ -0,0 +1,26 @@
+# A workflow that returns valid status checks for required checks that are
+# skipped in the main workflow (due to the push request not modifying the code).
+#
+# This is an annoying workaround as GitHub does not support workflow path
+# filtering + required checks.
+# See https://github.com/orgs/community/discussions/44490
+
+name: Continuous integration 🐍 - skipped
+
+on:
+  pull_request:
+    branches:
+      - main
+    paths-ignore:
+      - 'quantinuum-hugr-py/**'
+      - 'pyproject.toml'
+      - '!**/*.md'
+  workflow_dispatch: {}
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    name: check python
+    steps:
+      - name: Do nothing
+        run: echo "This is a dummy step to return a valid status check"
diff --git a/.github/workflows/ci-python.yml b/.github/workflows/ci-python.yml
new file mode 100644
index 000000000..f15ffa349
--- /dev/null
+++ b/.github/workflows/ci-python.yml
@@ -0,0 +1,90 @@
+name: Continuous integration 🐍
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+    paths:
+      - 'quantinuum-hugr-py/**'
+      - 'pyproject.toml'
+      - '!**/*.md'
+  merge_group:
+    types: [checks_requested]
+  workflow_dispatch: {}
+
+env:
+  CARGO_TERM_COLOR: always
+  CARGO_INCREMENTAL: 0
+  RUSTFLAGS: "--cfg=ci_run"
+  MIRIFLAGS: '-Zmiri-permissive-provenance' # Required due to warnings in bitvec 1.0.1
+  CI: true # insta snapshots behave differently on ci
+  SCCACHE_GHA_ENABLED: "true"
+  RUSTC_WRAPPER: "sccache"
+
+jobs:
+  check:
+    name: check python
+    runs-on: ubuntu-latest
+
+    strategy:
+      matrix:
+        python-version: ['3.10']
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Run sccache-cache
+        uses: mozilla-actions/sccache-action@v0.0.3
+      - name: Install poetry
+        run: pipx install poetry
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v3
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: "poetry"
+
+      - name: Install the project libraries
+        run: poetry install
+
+      - name: Type check with mypy
+        run: poetry run mypy guppylang
+
+      - name: Check formatting with ruff
+        run: poetry run ruff format --check
+
+      - name: Lint with ruff
+        run: poetry run ruff check
+
+      - name: Run tests
+        run: poetry run pytest
+
+  coverage:
+    if: github.event_name != 'merge_group'
+    needs: check
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - name: Run sccache-cache
+        uses: mozilla-actions/sccache-action@v0.0.3
+      - name: Install poetry
+        run: pipx install poetry
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v3
+        with:
+          python-version: '3.10'
+          cache: "poetry"
+
+      - name: Install the project libraries
+        run: poetry install
+
+      - name: Run python tests with coverage instrumentation
+        run: poetry run pytest --cov=./ --cov-report=xml
+
+      - name: Upload python coverage to codecov.io
+        uses: codecov/codecov-action@v3
+        with:
+          files: coverage.xml
+          name: python
+          token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/ci-rs-skip.yml b/.github/workflows/ci-rs-skip.yml
new file mode 100644
index 000000000..aeb146a0e
--- /dev/null
+++ b/.github/workflows/ci-rs-skip.yml
@@ -0,0 +1,34 @@
+# A workflow that returns valid status checks for required checks that are
+# skipped in the main workflow (due to the push request not modifying the code).
+#
+# This is an annoying workaround as GitHub does not support workflow path
+# filtering + required checks.
+# See https://github.com/orgs/community/discussions/44490
+
+name: Continuous integration 🦀 - skipped
+
+on:
+  pull_request:
+    branches:
+      - main
+    paths-ignore:
+      - 'quantinuum-hugr/**'
+      - 'specification/schema/**'
+      - 'Cargo.toml'
+      - '!**/*.md'
+  workflow_dispatch: {}
+
+jobs:
+  check:
+    runs-on: ubuntu-latest
+    name: check
+    steps:
+      - name: Do nothing
+        run: echo "This is a dummy step to return a valid status check"
+
+  tests:
+    runs-on: ubuntu-latest
+    name: tests (Rust stable)
+    steps:
+      - name: Do nothing
+        run: echo "This is a dummy step to return a valid status check"
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci-rs.yml
similarity index 95%
rename from .github/workflows/ci.yml
rename to .github/workflows/ci-rs.yml
index 725dea474..22d995c9f 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci-rs.yml
@@ -1,4 +1,4 @@
-name: Continuous integration
+name: Continuous integration 🦀
 
 on:
   push:
@@ -7,6 +7,11 @@ on:
   pull_request:
     branches:
       - main
+    paths:
+      - 'quantinuum-hugr/**'
+      - 'specification/schema/**'
+      - 'Cargo.toml'
+      - '!**/*.md'
   merge_group:
     types: [checks_requested]
   workflow_dispatch: {}
@@ -110,6 +115,6 @@ jobs:
         uses: codecov/codecov-action@v4
         with:
           files: coverage.json
-          name: ubuntu
+          name: rust
         env:
           CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.gitignore b/.gitignore
index 2d97d91f0..8d85e4872 100644
--- a/.gitignore
+++ b/.gitignore
@@ -167,3 +167,6 @@ dmypy.json
 
 # Cython debug symbols
 cython_debug/
+
+# ruff
+.ruff_cache
diff --git a/justfile b/justfile
index d950f63f2..941274c20 100644
--- a/justfile
+++ b/justfile
@@ -9,6 +9,7 @@ test:
 # Auto-fix all clippy warnings
 fix:
     cargo clippy --all-targets --all-features --workspace --fix --allow-staged
+    poetry run ruff check --fix
 
 # Run the pre-commit checks
 check:
@@ -23,14 +24,9 @@ format:
 coverage:
     cargo llvm-cov --lcov > lcov.info
 
-# Run pre-commit checks on the python code
-pycheck:
-    poetry run ruff format --check
-    poetry run ruff check
-
 # Load a poetry shell with the dependencies installed
 pyshell:
-    poetry install
+    poetry shell
 
 # Run the python tests
 pytest:

From eb739695dad8b1165cd31c93c2bdb5d8bdc82853 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 16:28:36 +0000
Subject: [PATCH 03/10] Update CI badges in README

---
 README.md                    | 2 +-
 quantinuum-hugr-py/README.md | 7 +++----
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/README.md b/README.md
index 79baadaf6..749ab51db 100644
--- a/README.md
+++ b/README.md
@@ -48,7 +48,7 @@ See [DEVELOPMENT.md](https://github.com/CQCL/hugr/blob/main/DEVELOPMENT.md) for
 This project is licensed under Apache License, Version 2.0 ([LICENSE][] or http://www.apache.org/licenses/LICENSE-2.0).
 
   [API documentation here]: https://docs.rs/quantinuum-hugr/
-  [build_status]: https://github.com/CQCL/hugr/workflows/Continuous%20integration/badge.svg?branch=main
+  [build_status]: https://github.com/CQCL/hugr/actions/workflows/ci-rs.yml/badge.svg?branch=main
   [msrv]: https://img.shields.io/badge/rust-1.75.0%2B-blue.svg
   [crates]: https://img.shields.io/crates/v/quantinuum-hugr
   [codecov]: https://img.shields.io/codecov/c/gh/CQCL/hugr?logo=codecov
diff --git a/quantinuum-hugr-py/README.md b/quantinuum-hugr-py/README.md
index fc7e0b8ed..0538d9362 100644
--- a/quantinuum-hugr-py/README.md
+++ b/quantinuum-hugr-py/README.md
@@ -34,18 +34,17 @@ TODO
 
 ## Recent Changes
 
-See [CHANGELOG][] for a list of changes. The minimum supported rust
-version will only change on major releases.
+TODO
 
 ## Development
 
-See [DEVELOPMENT.md](https://github.com/CQCL/hugr/blob/main/DEVELOPMENT.md) for instructions on setting up the development environment.
+TODO
 
 ## License
 
 This project is licensed under Apache License, Version 2.0 ([LICENSE][] or http://www.apache.org/licenses/LICENSE-2.0).
 
-  [build_status]: https://github.com/CQCL/hugr/workflows/Continuous%20integration/badge.svg?branch=main
+  [build_status]: https://github.com/CQCL/hugr/actions/workflows/ci-py.yml/badge.svg?branch=main
   [codecov]: https://img.shields.io/codecov/c/gh/CQCL/hugr?logo=codecov
   [LICENSE]: https://github.com/CQCL/hugr/blob/main/LICENCE
   [CHANGELOG]: https://github.com/CQCL/hugr/blob/main/quantinuum-hugr-py/CHANGELOG.md

From 9ef775f398c94d9dfacb04a90c6bfea8f4e67694 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 16:49:02 +0000
Subject: [PATCH 04/10] Add mypy to pre-commit

---
 .github/pre-commit                            |   9 +
 .../{ci-python-skip.yml => ci-py-skip.yml}    |   2 +-
 .../workflows/{ci-python.yml => ci-py.yml}    |   2 +-
 poetry.lock                                   | 418 +++---------------
 pyproject.toml                                |   6 +-
 quantinuum-hugr-py/README.md                  |   6 +-
 quantinuum-hugr-py/pyproject.toml             |   6 -
 7 files changed, 88 insertions(+), 361 deletions(-)
 rename .github/workflows/{ci-python-skip.yml => ci-py-skip.yml} (95%)
 rename .github/workflows/{ci-python.yml => ci-py.yml} (98%)

diff --git a/.github/pre-commit b/.github/pre-commit
index 66fa30775..fd455cc0b 100755
--- a/.github/pre-commit
+++ b/.github/pre-commit
@@ -37,6 +37,15 @@ then
     exit 1
 fi
 
+# Run `mypy` for python type checking
+if ! poetry run mypy .
+then
+    echo ""
+    echo "There are some python code style issues."
+    echo "Run `ruff format` first."
+    exit 1
+fi
+
 # Run `ruff` python linting
 if ! poetry run ruff check
 then
diff --git a/.github/workflows/ci-python-skip.yml b/.github/workflows/ci-py-skip.yml
similarity index 95%
rename from .github/workflows/ci-python-skip.yml
rename to .github/workflows/ci-py-skip.yml
index b67ad143e..03668fbca 100644
--- a/.github/workflows/ci-python-skip.yml
+++ b/.github/workflows/ci-py-skip.yml
@@ -20,7 +20,7 @@ on:
 jobs:
   check:
     runs-on: ubuntu-latest
-    name: check python
+    name: check python (3.10)
     steps:
       - name: Do nothing
         run: echo "This is a dummy step to return a valid status check"
diff --git a/.github/workflows/ci-python.yml b/.github/workflows/ci-py.yml
similarity index 98%
rename from .github/workflows/ci-python.yml
rename to .github/workflows/ci-py.yml
index f15ffa349..1fd8e75e7 100644
--- a/.github/workflows/ci-python.yml
+++ b/.github/workflows/ci-py.yml
@@ -49,7 +49,7 @@ jobs:
         run: poetry install
 
       - name: Type check with mypy
-        run: poetry run mypy guppylang
+        run: poetry run mypy .
 
       - name: Check formatting with ruff
         run: poetry run ruff format --check
diff --git a/poetry.lock b/poetry.lock
index 9673c1a89..6aaaf3166 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -92,22 +92,6 @@ files = [
 [package.extras]
 test = ["pytest (>=6)"]
 
-[[package]]
-name = "graphviz"
-version = "0.20.2"
-description = "Simple Python interface for Graphviz"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "graphviz-0.20.2-py3-none-any.whl", hash = "sha256:63d1ae75f1ca60f980e1cd3a61a678eef8de645ef8427736b2bb9bdd035ca44b"},
-    {file = "graphviz-0.20.2.zip", hash = "sha256:d29ca3aadbe5d6e6c584045b7ec4fc1c15af2448dc1c0211b5e94344833243da"},
-]
-
-[package.extras]
-dev = ["flake8", "pep8-naming", "tox (>=3)", "twine", "wheel"]
-docs = ["sphinx (>=5,<7)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
-test = ["coverage", "pytest (>=7,<8.1)", "pytest-cov", "pytest-mock (>=3)"]
-
 [[package]]
 name = "iniconfig"
 version = "2.0.0"
@@ -120,185 +104,61 @@ files = [
 ]
 
 [[package]]
-name = "jinja2"
-version = "3.1.3"
-description = "A very fast and expressive template engine."
+name = "mypy"
+version = "1.9.0"
+description = "Optional static typing for Python"
 optional = false
-python-versions = ">=3.7"
+python-versions = ">=3.8"
 files = [
-    {file = "Jinja2-3.1.3-py3-none-any.whl", hash = "sha256:7d6d50dd97d52cbc355597bd845fabfbac3f551e1f99619e39a35ce8c370b5fa"},
-    {file = "Jinja2-3.1.3.tar.gz", hash = "sha256:ac8bd6544d4bb2c9792bf3a159e80bba8fda7f07e81bc3aed565432d5925ba90"},
+    {file = "mypy-1.9.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:f8a67616990062232ee4c3952f41c779afac41405806042a8126fe96e098419f"},
+    {file = "mypy-1.9.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:d357423fa57a489e8c47b7c85dfb96698caba13d66e086b412298a1a0ea3b0ed"},
+    {file = "mypy-1.9.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:49c87c15aed320de9b438ae7b00c1ac91cd393c1b854c2ce538e2a72d55df150"},
+    {file = "mypy-1.9.0-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:48533cdd345c3c2e5ef48ba3b0d3880b257b423e7995dada04248725c6f77374"},
+    {file = "mypy-1.9.0-cp310-cp310-win_amd64.whl", hash = "sha256:4d3dbd346cfec7cb98e6cbb6e0f3c23618af826316188d587d1c1bc34f0ede03"},
+    {file = "mypy-1.9.0-cp311-cp311-macosx_10_9_x86_64.whl", hash = "sha256:653265f9a2784db65bfca694d1edd23093ce49740b2244cde583aeb134c008f3"},
+    {file = "mypy-1.9.0-cp311-cp311-macosx_11_0_arm64.whl", hash = "sha256:3a3c007ff3ee90f69cf0a15cbcdf0995749569b86b6d2f327af01fd1b8aee9dc"},
+    {file = "mypy-1.9.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:2418488264eb41f69cc64a69a745fad4a8f86649af4b1041a4c64ee61fc61129"},
+    {file = "mypy-1.9.0-cp311-cp311-musllinux_1_1_x86_64.whl", hash = "sha256:68edad3dc7d70f2f17ae4c6c1b9471a56138ca22722487eebacfd1eb5321d612"},
+    {file = "mypy-1.9.0-cp311-cp311-win_amd64.whl", hash = "sha256:85ca5fcc24f0b4aeedc1d02f93707bccc04733f21d41c88334c5482219b1ccb3"},
+    {file = "mypy-1.9.0-cp312-cp312-macosx_10_9_x86_64.whl", hash = "sha256:aceb1db093b04db5cd390821464504111b8ec3e351eb85afd1433490163d60cd"},
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+    {file = "mypy-1.9.0.tar.gz", hash = "sha256:3cc5da0127e6a478cddd906068496a97a7618a21ce9b54bde5bf7e539c7af974"},
 ]
 
 [package.dependencies]
-MarkupSafe = ">=2.0"
-
-[package.extras]
-i18n = ["Babel (>=2.7)"]
-
-[[package]]
-name = "lark-parser"
-version = "0.12.0"
-description = "a modern parsing library"
-optional = false
-python-versions = "*"
-files = [
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-]
-
-[package.extras]
-atomic-cache = ["atomicwrites"]
-nearley = ["js2py"]
-regex = ["regex"]
-
-[[package]]
-name = "markupsafe"
-version = "2.1.5"
-description = "Safely add untrusted strings to HTML/XML markup."
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 [[package]]
@@ -329,13 +189,13 @@ testing = ["pytest", "pytest-benchmark"]
 
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+version = "8.1.1"
 description = "pytest: simple powerful testing with Python"
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 [package.dependencies]
@@ -343,11 +203,11 @@ colorama = {version = "*", markers = "sys_platform == \"win32\""}
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 iniconfig = "*"
 packaging = "*"
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 [package.extras]
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+testing = ["argcomplete", "attrs (>=19.2)", "hypothesis (>=3.56)", "mock", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"]
 
 [[package]]
 name = "pytest-cov"
@@ -367,48 +227,9 @@ pytest = ">=4.6"
 [package.extras]
 testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"]
 
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-sympy = ">=1.6,<2.0"
-types-pkg-resources = "*"
-typing-extensions = ">=4.2,<5.0"
-
-[package.extras]
-zx = ["autoray (>=0.6.1)", "quimb (>=1.5,<2.0)"]
-
 [[package]]
 name = "quantinuum-hugr"
-version = "0.0.0-alpha.1"
+version = "0.0.0"
 description = "Quantinuum's common representation of quantum circuits and operations"
 optional = false
 python-versions = ">=3.10"
@@ -419,118 +240,32 @@ develop = true
 type = "directory"
 url = "quantinuum-hugr-py"
 
-[[package]]
-name = "qwasm"
-version = "1.0.1"
-description = "WebAssembly decoder & disassembler"
-optional = false
-python-versions = "*"
-files = [
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-]
-
-[package.dependencies]
-setuptools = "*"
-
 [[package]]
 name = "ruff"
-version = "0.1.15"
+version = "0.3.3"
 description = "An extremely fast Python linter and code formatter, written in Rust."
 optional = false
 python-versions = ">=3.7"
 files = [
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+    {file = "ruff-0.3.3.tar.gz", hash = "sha256:38671be06f57a2f8aba957d9f701ea889aa5736be806f18c0cd03d6ff0cbca8d"},
 ]
 
-[[package]]
-name = "scipy"
-version = "1.12.0"
-description = "Fundamental algorithms for scientific computing in Python"
-optional = false
-python-versions = ">=3.9"
-files = [
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-    {file = "scipy-1.12.0-cp39-cp39-win_amd64.whl", hash = "sha256:b360f1b6b2f742781299514e99ff560d1fe9bd1bff2712894b52abe528d1fd1e"},
-    {file = "scipy-1.12.0.tar.gz", hash = "sha256:4bf5abab8a36d20193c698b0f1fc282c1d083c94723902c447e5d2f1780936a3"},
-]
-
-[package.dependencies]
-numpy = ">=1.22.4,<1.29.0"
-
-[package.extras]
-dev = ["click", "cython-lint (>=0.12.2)", "doit (>=0.36.0)", "mypy", "pycodestyle", "pydevtool", "rich-click", "ruff", "types-psutil", "typing_extensions"]
-doc = ["jupytext", "matplotlib (>2)", "myst-nb", "numpydoc", "pooch", "pydata-sphinx-theme (==0.9.0)", "sphinx (!=4.1.0)", "sphinx-design (>=0.2.0)"]
-test = ["asv", "gmpy2", "hypothesis", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeout", "pytest-xdist", "scikit-umfpack", "threadpoolctl"]
-
-[[package]]
-name = "setuptools"
-version = "69.2.0"
-description = "Easily download, build, install, upgrade, and uninstall Python packages"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "setuptools-69.2.0-py3-none-any.whl", hash = "sha256:c21c49fb1042386df081cb5d86759792ab89efca84cf114889191cd09aacc80c"},
-    {file = "setuptools-69.2.0.tar.gz", hash = "sha256:0ff4183f8f42cd8fa3acea16c45205521a4ef28f73c6391d8a25e92893134f2e"},
-]
-
-[package.extras]
-docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "pygments-github-lexers (==0.0.5)", "rst.linker (>=1.9)", "sphinx (<7.2.5)", "sphinx (>=3.5)", "sphinx-favicon", "sphinx-inline-tabs", "sphinx-lint", "sphinx-notfound-page (>=1,<2)", "sphinx-reredirects", "sphinxcontrib-towncrier"]
-testing = ["build[virtualenv]", "filelock (>=3.4.0)", "importlib-metadata", "ini2toml[lite] (>=0.9)", "jaraco.develop (>=7.21)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "mypy (==1.9)", "packaging (>=23.2)", "pip (>=19.1)", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-home (>=0.5)", "pytest-mypy (>=0.9.1)", "pytest-perf", "pytest-ruff (>=0.2.1)", "pytest-timeout", "pytest-xdist (>=3)", "tomli", "tomli-w (>=1.0.0)", "virtualenv (>=13.0.0)", "wheel"]
-testing-integration = ["build[virtualenv] (>=1.0.3)", "filelock (>=3.4.0)", "jaraco.envs (>=2.2)", "jaraco.path (>=3.2.0)", "packaging (>=23.2)", "pytest", "pytest-enabler", "pytest-xdist", "tomli", "virtualenv (>=13.0.0)", "wheel"]
-
-[[package]]
-name = "sympy"
-version = "1.12"
-description = "Computer algebra system (CAS) in Python"
-optional = false
-python-versions = ">=3.8"
-files = [
-    {file = "sympy-1.12-py3-none-any.whl", hash = "sha256:c3588cd4295d0c0f603d0f2ae780587e64e2efeedb3521e46b9bb1d08d184fa5"},
-    {file = "sympy-1.12.tar.gz", hash = "sha256:ebf595c8dac3e0fdc4152c51878b498396ec7f30e7a914d6071e674d49420fb8"},
-]
-
-[package.dependencies]
-mpmath = ">=0.19"
-
 [[package]]
 name = "tomli"
 version = "2.0.1"
@@ -542,17 +277,6 @@ files = [
     {file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
 ]
 
-[[package]]
-name = "types-pkg-resources"
-version = "0.1.3"
-description = "Typing stubs for pkg_resources"
-optional = false
-python-versions = "*"
-files = [
-    {file = "types-pkg_resources-0.1.3.tar.gz", hash = "sha256:834a9b8d3dbea343562fd99d5d3359a726f6bf9d3733bccd2b4f3096fbab9dae"},
-    {file = "types_pkg_resources-0.1.3-py2.py3-none-any.whl", hash = "sha256:0cb9972cee992249f93fff1a491bf2dc3ce674e5a1926e27d4f0866f7d9b6d9c"},
-]
-
 [[package]]
 name = "typing-extensions"
 version = "4.10.0"
@@ -567,4 +291,4 @@ files = [
 [metadata]
 lock-version = "2.0"
 python-versions = "^3.10"
-content-hash = "848bd58a1c4f66c25a9448603965536edfe0467e87592e871e5c971b6e3b120c"
+content-hash = "eafdb1c10c2862ba10b0bfc815d41f1f1dd2799971c34f1a93c5a807d0319f1e"
diff --git a/pyproject.toml b/pyproject.toml
index e87750139..ab5aef9cc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -12,10 +12,10 @@ package-mode = false
 python = "^3.10"
 
 [tool.poetry.group.dev.dependencies]
-pytket = "*"
-pytest = "^7.1.2"
+pytest = "^8.1.1"
 pytest-cov = "^4.1.0"
-ruff = "^0.1.3"
+mypy = "^1.9.0"
+ruff = "^0.3.3"
 
 [tool.poetry.group.quantinuum-hugr.dependencies]
 quantinuum-hugr = { path = "quantinuum-hugr-py", develop = true }
diff --git a/quantinuum-hugr-py/README.md b/quantinuum-hugr-py/README.md
index 0538d9362..d78b6d6a8 100644
--- a/quantinuum-hugr-py/README.md
+++ b/quantinuum-hugr-py/README.md
@@ -1,4 +1,4 @@
-quantinuum-hugr
+quantinuum_hugr
 ===============
 
 [![build_status][]](https://github.com/CQCL/hugr/actions)
@@ -22,10 +22,10 @@ The HUGR specification is [here](https://github.com/CQCL/hugr/blob/main/specific
 
 ## Install
 
-`quantinuum-hugr` can be installed via `pip`. Requires Python >= 3.10.
+`quantinuum_hugr` can be installed via `pip`. Requires Python >= 3.10.
 
 ```sh
-pip install quantinuum-hugr
+pip install quantinuum_hugr
 ```
 
 ## Usage
diff --git a/quantinuum-hugr-py/pyproject.toml b/quantinuum-hugr-py/pyproject.toml
index 588c8c65b..1978e8591 100644
--- a/quantinuum-hugr-py/pyproject.toml
+++ b/quantinuum-hugr-py/pyproject.toml
@@ -14,12 +14,6 @@ repository = "https://github.com/CQCL/hugr"
 [tool.poetry.dependencies]
 python = ">=3.10"
 
-[tool.poetry.group.dev.dependencies]
-pytket = "*"
-pytest = "^7.1.2"
-pytest-cov = "^4.1.0"
-ruff = "^0.1.3"
-
 [tool.pytest.ini_options]
 # Lark throws deprecation warnings for `src_parse` and `src_constants`.
 filterwarnings = "ignore::DeprecationWarning:lark.*"

From 2ec0f2be213775e2da280ff8a7aa40a977fefb03 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 17:02:02 +0000
Subject: [PATCH 05/10] use dorny/paths-filter action

---
 .github/workflows/ci-py-skip.yml | 26 ---------------------
 .github/workflows/ci-py.yml      | 39 ++++++++++++++++++++++----------
 .github/workflows/ci-rs-skip.yml | 34 ----------------------------
 .github/workflows/ci-rs.yml      | 39 +++++++++++++++++++++++++-------
 4 files changed, 58 insertions(+), 80 deletions(-)
 delete mode 100644 .github/workflows/ci-py-skip.yml
 delete mode 100644 .github/workflows/ci-rs-skip.yml

diff --git a/.github/workflows/ci-py-skip.yml b/.github/workflows/ci-py-skip.yml
deleted file mode 100644
index 03668fbca..000000000
--- a/.github/workflows/ci-py-skip.yml
+++ /dev/null
@@ -1,26 +0,0 @@
-# A workflow that returns valid status checks for required checks that are
-# skipped in the main workflow (due to the push request not modifying the code).
-#
-# This is an annoying workaround as GitHub does not support workflow path
-# filtering + required checks.
-# See https://github.com/orgs/community/discussions/44490
-
-name: Continuous integration 🐍 - skipped
-
-on:
-  pull_request:
-    branches:
-      - main
-    paths-ignore:
-      - 'quantinuum-hugr-py/**'
-      - 'pyproject.toml'
-      - '!**/*.md'
-  workflow_dispatch: {}
-
-jobs:
-  check:
-    runs-on: ubuntu-latest
-    name: check python (3.10)
-    steps:
-      - name: Do nothing
-        run: echo "This is a dummy step to return a valid status check"
diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index 1fd8e75e7..5e5159208 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -7,25 +7,40 @@ on:
   pull_request:
     branches:
       - main
-    paths:
-      - 'quantinuum-hugr-py/**'
-      - 'pyproject.toml'
-      - '!**/*.md'
   merge_group:
     types: [checks_requested]
   workflow_dispatch: {}
 
 env:
-  CARGO_TERM_COLOR: always
-  CARGO_INCREMENTAL: 0
-  RUSTFLAGS: "--cfg=ci_run"
-  MIRIFLAGS: '-Zmiri-permissive-provenance' # Required due to warnings in bitvec 1.0.1
-  CI: true # insta snapshots behave differently on ci
   SCCACHE_GHA_ENABLED: "true"
-  RUSTC_WRAPPER: "sccache"
 
 jobs:
+  # Check if changes were made to the relevant files.
+  # Always returns true if running on the default branch, to ensure all changes are throughly checked.
+  changes:
+    runs-on: ubuntu-latest
+    # Required permissions
+    permissions:
+      pull-requests: read
+    # Set job outputs to values from filter step
+    outputs:
+      python: ${{ github.ref_name == github.event.repository.default_branch || steps.filter.outputs.python }}
+    steps:
+    # For pull requests it's not necessary to checkout the code
+    - if: github.ref_name != github.event.repository.default_branch
+      uses: dorny/paths-filter@v3
+      id: filter
+      with:
+        filters: |
+          python:
+            - 'quantinuum-hugr-py/**'
+            - 'pyproject.toml'
+            - '!**/*.md'
+
   check:
+    needs: changes
+    if: ${{ needs.changes.outputs.python == 'true' }}
+
     name: check python
     runs-on: ubuntu-latest
 
@@ -61,8 +76,8 @@ jobs:
         run: poetry run pytest
 
   coverage:
-    if: github.event_name != 'merge_group'
-    needs: check
+    needs: [changes, check]
+    if: ${{ needs.changes.outputs.python == 'true' }} && github.event_name != 'merge_group'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
diff --git a/.github/workflows/ci-rs-skip.yml b/.github/workflows/ci-rs-skip.yml
deleted file mode 100644
index aeb146a0e..000000000
--- a/.github/workflows/ci-rs-skip.yml
+++ /dev/null
@@ -1,34 +0,0 @@
-# A workflow that returns valid status checks for required checks that are
-# skipped in the main workflow (due to the push request not modifying the code).
-#
-# This is an annoying workaround as GitHub does not support workflow path
-# filtering + required checks.
-# See https://github.com/orgs/community/discussions/44490
-
-name: Continuous integration 🦀 - skipped
-
-on:
-  pull_request:
-    branches:
-      - main
-    paths-ignore:
-      - 'quantinuum-hugr/**'
-      - 'specification/schema/**'
-      - 'Cargo.toml'
-      - '!**/*.md'
-  workflow_dispatch: {}
-
-jobs:
-  check:
-    runs-on: ubuntu-latest
-    name: check
-    steps:
-      - name: Do nothing
-        run: echo "This is a dummy step to return a valid status check"
-
-  tests:
-    runs-on: ubuntu-latest
-    name: tests (Rust stable)
-    steps:
-      - name: Do nothing
-        run: echo "This is a dummy step to return a valid status check"
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index 22d995c9f..0cd87ccc3 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -7,11 +7,6 @@ on:
   pull_request:
     branches:
       - main
-    paths:
-      - 'quantinuum-hugr/**'
-      - 'specification/schema/**'
-      - 'Cargo.toml'
-      - '!**/*.md'
   merge_group:
     types: [checks_requested]
   workflow_dispatch: {}
@@ -26,7 +21,32 @@ env:
   RUSTC_WRAPPER: "sccache"
 
 jobs:
+  # Check if changes were made to the relevant files.
+  # Always returns true if running on the default branch, to ensure all changes are throughly checked.
+  changes:
+    runs-on: ubuntu-latest
+    # Required permissions
+    permissions:
+      pull-requests: read
+    # Set job outputs to values from filter step
+    outputs:
+      rust: ${{ github.ref_name == github.event.repository.default_branch || steps.filter.outputs.rust }}
+    steps:
+    # For pull requests it's not necessary to checkout the code
+    - if: github.ref_name != github.event.repository.default_branch
+      uses: dorny/paths-filter@v3
+      id: filter
+      with:
+        filters: |
+          rust:
+            - 'quantinuum-hugr/**'
+            - 'specification/schema/**'
+            - 'Cargo.toml'
+            - '!**/*.md'
+
   check:
+    needs: changes
+    if: ${{ needs.changes.outputs.rust == 'true' }}
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
@@ -45,7 +65,8 @@ jobs:
           RUSTDOCFLAGS: "-Dwarnings"
 
   benches:
-    if: github.event_name != 'merge_group'
+    needs: changes
+    if: ${{ needs.changes.outputs.rust == 'true' }} && github.event_name != 'merge_group'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
@@ -58,6 +79,8 @@ jobs:
         run: cargo bench --verbose --no-run --workspace --all-features
 
   tests:
+    needs: changes
+    if: ${{ needs.changes.outputs.rust == 'true' }}
     runs-on: ubuntu-latest
     strategy:
       matrix:
@@ -93,8 +116,8 @@ jobs:
         run: cargo test --verbose --workspace --all-features
 
   coverage:
-    if: github.event_name != 'merge_group'
-    needs: [tests, check]
+    needs: [changes, tests, check]
+    if: ${{ needs.changes.outputs.rust == 'true' }} && github.event_name != 'merge_group'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4

From 230e625466082f60b7e04e6edf53b3da3f3685b9 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Mon, 18 Mar 2024 17:58:01 +0000
Subject: [PATCH 06/10] remove negative rule

it doesn't seem to work, the filter always returs `true`
if we add something like

  - '!**/*.md'
---
 .github/workflows/ci-py.yml | 4 +---
 .github/workflows/ci-rs.yml | 6 ++----
 2 files changed, 3 insertions(+), 7 deletions(-)

diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index 5e5159208..394af6286 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -27,15 +27,13 @@ jobs:
       python: ${{ github.ref_name == github.event.repository.default_branch || steps.filter.outputs.python }}
     steps:
     # For pull requests it's not necessary to checkout the code
-    - if: github.ref_name != github.event.repository.default_branch
-      uses: dorny/paths-filter@v3
+    - uses: dorny/paths-filter@v3
       id: filter
       with:
         filters: |
           python:
             - 'quantinuum-hugr-py/**'
             - 'pyproject.toml'
-            - '!**/*.md'
 
   check:
     needs: changes
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index 0cd87ccc3..2f63f5565 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -33,16 +33,14 @@ jobs:
       rust: ${{ github.ref_name == github.event.repository.default_branch || steps.filter.outputs.rust }}
     steps:
     # For pull requests it's not necessary to checkout the code
-    - if: github.ref_name != github.event.repository.default_branch
-      uses: dorny/paths-filter@v3
+    - uses: dorny/paths-filter@v3
       id: filter
       with:
         filters: |
           rust:
             - 'quantinuum-hugr/**'
-            - 'specification/schema/**'
             - 'Cargo.toml'
-            - '!**/*.md'
+            - 'specification/schema/**'
 
   check:
     needs: changes

From 8735b2ea8fddea4fb610c62f8357d6c01321057a Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Tue, 19 Mar 2024 10:31:34 +0000
Subject: [PATCH 07/10] Address some review comments

---
 .github/pre-commit                            |   4 +-
 .github/workflows/ci-py.yml                   |   1 +
 .github/workflows/ci-rs.yml                   |   1 +
 .gitignore                                    | 126 +-----------------
 quantinuum-hugr-py/CHANGELOG.md               |   1 +
 quantinuum-hugr-py/README.md                  |  11 +-
 quantinuum-hugr-py/pyproject.toml             |  10 +-
 .../src/quantinuum_hugr/__init__.py           |   2 +-
 8 files changed, 19 insertions(+), 137 deletions(-)
 create mode 100644 quantinuum-hugr-py/CHANGELOG.md

diff --git a/.github/pre-commit b/.github/pre-commit
index fd455cc0b..0dc61a141 100755
--- a/.github/pre-commit
+++ b/.github/pre-commit
@@ -33,7 +33,7 @@ if ! poetry run ruff format --check
 then
     echo ""
     echo "There are some python code style issues."
-    echo "Run `ruff format` first."
+    echo "Run `poetry run ruff format` first."
     exit 1
 fi
 
@@ -42,7 +42,7 @@ if ! poetry run mypy .
 then
     echo ""
     echo "There are some python code style issues."
-    echo "Run `ruff format` first."
+    echo "Fix the warnings returned by `poetry run mypy .` first."
     exit 1
 fi
 
diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index 394af6286..434ae876b 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -18,6 +18,7 @@ jobs:
   # Check if changes were made to the relevant files.
   # Always returns true if running on the default branch, to ensure all changes are throughly checked.
   changes:
+    name: Check for changes in Python files
     runs-on: ubuntu-latest
     # Required permissions
     permissions:
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index 2f63f5565..c84b89bbd 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -24,6 +24,7 @@ jobs:
   # Check if changes were made to the relevant files.
   # Always returns true if running on the default branch, to ensure all changes are throughly checked.
   changes:
+    name: Check for changes in Rust files
     runs-on: ubuntu-latest
     # Required permissions
     permissions:
diff --git a/.gitignore b/.gitignore
index 8d85e4872..836f10146 100644
--- a/.gitignore
+++ b/.gitignore
@@ -25,148 +25,24 @@ devenv.local.nix
 
 # Coverage report
 lcov.info
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]
 *$py.class
 
-# C extensions
-*.so
-
-# Distribution / packaging
-.Python
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-share/python-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-MANIFEST
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
 # Unit test / coverage reports
 htmlcov/
-.tox/
-.nox/
 .coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-*.py,cover
-.hypothesis/
-.pytest_cache/
-cover/
-
-# Translations
-*.mo
-*.pot
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-.pybuilder/
 
 # Jupyter Notebook
 .ipynb_checkpoints
 
-# IPython
-profile_default/
-ipython_config.py
-
-# pyenv
-#   For a library or package, you might want to ignore these files since the code is
-#   intended to run in multiple environments; otherwise, check them in:
-.python-version
-
-# pipenv
-#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
-#   However, in case of collaboration, if having platform-specific dependencies or dependencies
-#   having no cross-platform support, pipenv may install dependencies that don't work, or not
-#   install all needed dependencies.
-#Pipfile.lock
-
-# poetry
-#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
-#   This is especially recommended for binary packages to ensure reproducibility, and is more
-#   commonly ignored for libraries.
-#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
-#poetry.lock
-
-# pdm
-#   Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
-#pdm.lock
-#   pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
-#   in version control.
-#   https://pdm.fming.dev/#use-with-ide
-.pdm.toml
-
-# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
-__pypackages__/
-
-# Celery stuff
-celerybeat-schedule
-celerybeat.pid
-
-# SageMath parsed files
-*.sage.py
-
 # Environments
 .env
 .venv
 env/
 venv/
-ENV/
-env.bak/
-venv.bak/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-.dmypy.json
-dmypy.json
-
-# Pyre type checker
-.pyre/
-
-# pytype static type analyzer
-.pytype/
-
-# Cython debug symbols
-cython_debug/
 
 # ruff
 .ruff_cache
diff --git a/quantinuum-hugr-py/CHANGELOG.md b/quantinuum-hugr-py/CHANGELOG.md
new file mode 100644
index 000000000..825c32f0d
--- /dev/null
+++ b/quantinuum-hugr-py/CHANGELOG.md
@@ -0,0 +1 @@
+# Changelog
diff --git a/quantinuum-hugr-py/README.md b/quantinuum-hugr-py/README.md
index d78b6d6a8..a03779b7a 100644
--- a/quantinuum-hugr-py/README.md
+++ b/quantinuum-hugr-py/README.md
@@ -20,12 +20,15 @@ The HUGR specification is [here](https://github.com/CQCL/hugr/blob/main/specific
   [`tket2`]: https://github.com/CQCL/tket2
 
 
-## Install
+## Installation
 
-`quantinuum_hugr` can be installed via `pip`. Requires Python >= 3.10.
+TODO
+
+The package name is `quantinuum_hugr`, but it hasn't been published yet.
+The current experimental version can be installed from the source code:
 
-```sh
-pip install quantinuum_hugr
+```bash
+pip install "quantinuum_hugr@git+https://github.com/CQCL/hugr.git@main#subdirectory=quantinuum-hugr-py"
 ```
 
 ## Usage
diff --git a/quantinuum-hugr-py/pyproject.toml b/quantinuum-hugr-py/pyproject.toml
index 1978e8591..ae1b60f8f 100644
--- a/quantinuum-hugr-py/pyproject.toml
+++ b/quantinuum-hugr-py/pyproject.toml
@@ -1,11 +1,11 @@
 [tool.poetry]
 name = "quantinuum_hugr"
 version = "0.0.0"
-description = "Quantinuum's common representation of quantum circuits and operations"
-classifiers = []                                                                      # TODO
-keywords = []                                                                         # TODO
-authors = []                                                                          # TODO
-maintainers = []                                                                      # TODO
+description = "Quantinuum's common representation for quantum programs"
+classifiers = []                                                        # TODO
+keywords = []                                                           # TODO
+authors = []                                                            # TODO
+maintainers = []                                                        # TODO
 license = "Apache-2.0"
 readme = "README.md"
 homepage = "https://github.com/CQCL/hugr"
diff --git a/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py b/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
index b001ec7a1..606c3dc58 100644
--- a/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
+++ b/quantinuum-hugr-py/src/quantinuum_hugr/__init__.py
@@ -1,4 +1,4 @@
-"""`quantinuum-hugr` is a Python package for the Quantinuum Hugr common
+"""`quantinuum-hugr` is a Python package for the Quantinuum HUGR common
 representation.
 """
 

From abfd2d5e37cdc8938862122825eba4824d62e6f4 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Tue, 19 Mar 2024 10:40:06 +0000
Subject: [PATCH 08/10] Add codecov flags to split coverage of subprojects

---
 .github/workflows/ci-py.yml |  1 +
 .github/workflows/ci-rs.yml |  4 ++--
 codecov.yml                 | 25 +++++++++++++++++++++++++
 3 files changed, 28 insertions(+), 2 deletions(-)
 create mode 100644 codecov.yml

diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index 434ae876b..1f8f4baeb 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -101,4 +101,5 @@ jobs:
         with:
           files: coverage.xml
           name: python
+          flags: python
           token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index c84b89bbd..1048a795c 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -138,5 +138,5 @@ jobs:
         with:
           files: coverage.json
           name: rust
-        env:
-          CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
+          flags: rust
+          token: ${{ secrets.CODECOV_TOKEN }}
diff --git a/codecov.yml b/codecov.yml
new file mode 100644
index 000000000..aec1d6163
--- /dev/null
+++ b/codecov.yml
@@ -0,0 +1,25 @@
+# Codecov coverage report configuration
+
+# Coverage report
+# Do not fail if the coverage is not met
+coverage:
+  status:
+    patch:
+      default:
+        informational: false
+        only_pulls: true
+    project:
+      default:
+        informational: true
+
+# Ignore tests and binaries
+ignore:
+  - "quantinuum-hugr-py/tests"
+
+# Coverage groups config
+flag_management:
+  default_rules: # the rules that will be followed for any flag added, generally
+    # Use previous coverage if one is not available for the current commit.
+    #
+    # (E.g. if the PR doesn't modify a subproject, we don't submit a coverage report for it.)
+    carryforward: true

From a935a0b2e1b184cc2de757cf17ecf576d677eea9 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Tue, 19 Mar 2024 10:59:46 +0000
Subject: [PATCH 09/10] Add a meta "required-checks" job that succeeds if
 things are skipped

---
 .github/workflows/ci-py.yml | 21 +++++++++++-
 .github/workflows/ci-rs.yml | 64 ++++++++++++++++++++++++++++---------
 2 files changed, 69 insertions(+), 16 deletions(-)

diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index 1f8f4baeb..eaee6ee84 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -74,9 +74,28 @@ jobs:
       - name: Run tests
         run: poetry run pytest
 
+  # This is a meta job to mark successful completion of the required checks,
+  # even if they are skipped due to no changes in the relevant files.
+  required-checks:
+    name: Required checks
+    needs: [check]
+    if: always()
+    runs-on: ubuntu-latest
+    steps:
+      - name: Fail if required checks failed
+        if: (failure() || cancelled())
+        run: |
+          echo "Required checks failed"
+          echo "Please check the logs for more information"
+          exit 1
+      - name: Pass if required checks passed
+        run: |
+          echo "All required checks passed"
+
   coverage:
     needs: [changes, check]
-    if: ${{ needs.changes.outputs.python == 'true' }} && github.event_name != 'merge_group'
+    # Run only if there are changes in the relevant files and the check job passed or was skipped
+    if: always() && !failure() && !cancelled() && needs.changes.outputs.python == 'true' && github.event_name != 'merge_group'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index 1048a795c..38368baf1 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -77,24 +77,39 @@ jobs:
       - name: Build benchmarks with all features
         run: cargo bench --verbose --no-run --workspace --all-features
 
-  tests:
+  # Run tests on Rust stable
+  tests-stable:
     needs: changes
     if: ${{ needs.changes.outputs.rust == 'true' }}
     runs-on: ubuntu-latest
+    name: tests (Rust stable)
+    steps:
+      - uses: actions/checkout@v4
+      - uses: mozilla-actions/sccache-action@v0.0.4
+      - id: toolchain
+        uses: dtolnay/rust-toolchain@master
+        with:
+          toolchain: 'stable'
+      - name: Configure default rust toolchain
+        run: rustup override set ${{steps.toolchain.outputs.name}}
+      - name: Build with no features
+        run: cargo test --verbose --workspace --no-default-features --no-run
+      - name: Tests with no features
+        run: cargo test --verbose --workspace --no-default-features
+      - name: Build with all features
+        run: cargo test --verbose --workspace --all-features --no-run
+      - name: Tests with all features
+        run: cargo test --verbose --workspace --all-features
+
+  # Run tests on other toolchains
+  tests-other:
+    needs: changes
+    if: ${{ needs.changes.outputs.rust == 'true' && github.event_name != 'merge_group' }}
+    runs-on: ubuntu-latest
     strategy:
+      fail-fast: true
       matrix:
-        rust: ['1.75', stable, beta, nightly]
-        # workaround to ignore non-stable tests when running the merge queue checks
-        # see: https://github.community/t/how-to-conditionally-include-exclude-items-in-matrix-eg-based-on-branch/16853/6
-        isMerge:
-            - ${{ github.event_name == 'merge_group' }}
-        exclude:
-          - rust: '1.75'
-            isMerge: true
-          - rust: beta
-            isMerge: true
-          - rust: nightly
-            isMerge: true
+        rust: ['1.75', beta, nightly]
     name: tests (Rust ${{ matrix.rust }})
     steps:
       - uses: actions/checkout@v4
@@ -114,9 +129,28 @@ jobs:
       - name: Tests with all features
         run: cargo test --verbose --workspace --all-features
 
+  # This is a meta job to mark successful completion of the required checks,
+  # even if they are skipped due to no changes in the relevant files.
+  required-checks:
+    name: Required checks
+    needs: [check, tests-stable]
+    if: always()
+    runs-on: ubuntu-latest
+    steps:
+      - name: Fail if required checks failed
+        if: (failure() || cancelled())
+        run: |
+          echo "Required checks failed"
+          echo "Please check the logs for more information"
+          exit 1
+      - name: Pass if required checks passed
+        run: |
+          echo "All required checks passed"
+
   coverage:
-    needs: [changes, tests, check]
-    if: ${{ needs.changes.outputs.rust == 'true' }} && github.event_name != 'merge_group'
+    needs: [changes, tests-stable, tests-other, check]
+    # Run only if there are changes in the relevant files and the check job passed or was skipped
+    if: always() && !failure() && !cancelled() && needs.changes.outputs.rust == 'true' && github.event_name != 'merge_group'
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4

From 2fe569c077125e6d8cd60a56403614fb024d85d9 Mon Sep 17 00:00:00 2001
From: Agustin Borgna <agustin.borgna@quantinuum.com>
Date: Tue, 19 Mar 2024 11:02:09 +0000
Subject: [PATCH 10/10] Change names of required checks

---
 .github/workflows/ci-py.yml | 2 +-
 .github/workflows/ci-rs.yml | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/.github/workflows/ci-py.yml b/.github/workflows/ci-py.yml
index eaee6ee84..d83043c21 100644
--- a/.github/workflows/ci-py.yml
+++ b/.github/workflows/ci-py.yml
@@ -77,7 +77,7 @@ jobs:
   # This is a meta job to mark successful completion of the required checks,
   # even if they are skipped due to no changes in the relevant files.
   required-checks:
-    name: Required checks
+    name: Required checks 🐍
     needs: [check]
     if: always()
     runs-on: ubuntu-latest
diff --git a/.github/workflows/ci-rs.yml b/.github/workflows/ci-rs.yml
index 38368baf1..4472981ba 100644
--- a/.github/workflows/ci-rs.yml
+++ b/.github/workflows/ci-rs.yml
@@ -132,7 +132,7 @@ jobs:
   # This is a meta job to mark successful completion of the required checks,
   # even if they are skipped due to no changes in the relevant files.
   required-checks:
-    name: Required checks
+    name: Required checks 🦀
     needs: [check, tests-stable]
     if: always()
     runs-on: ubuntu-latest