From 1ca2a72c8d05a1ba6fa5ba8dad14afb36a6d52b0 Mon Sep 17 00:00:00 2001
From: Logan Walker <logan.walker@me.com>
Date: Fri, 2 Apr 2021 14:15:41 -0400
Subject: [PATCH] Remove old code

---
 old/SWCParser.py | 42 ------------------------------------------
 1 file changed, 42 deletions(-)
 delete mode 100644 old/SWCParser.py

diff --git a/old/SWCParser.py b/old/SWCParser.py
deleted file mode 100644
index 855fd0c..0000000
--- a/old/SWCParser.py
+++ /dev/null
@@ -1,42 +0,0 @@
-from src.morpho import Neuron, TracingPoint
-
-
-def read_swc_file(fname):
-    """Reads in SWC file and corrects the parent-child relations
-    
-    :param fname: file to be read
-    :type fname: `string`
-    
-    :returns: corrected values
-    :rtype: `dictionary`
-    
-    Example:
-        >>> read_swc_file("neurite_2_v2.0.swc")
-        TracingPoint(x=1, y=215, z=88, r=1, t=1, children=[TracingPoint(x=1, y=215, z=89, r=1, t=1, children=[{ 1, truncated }], parent={...})])
-    """
-    lines = open(fname, "r").readlines()
-    i = 0
-    if lines[i][0] == "#":
-        while lines[i][0] == "#":
-            i += 1
-    lines = [line.strip().split() for line in lines[i:]]
-    lines = [tuple(int(val.split(".")[0]) for val in x) for x in lines[i:]]
-    lines = [
-        (x[-1], TracingPoint(x[2], x[3], x[4], 1, 1, None, x[0])) for x in lines[i:]
-    ]
-    stack = {}
-    for tp in lines[i:]:
-        stack[tp[1].file_id] = tp
-
-    for tp in stack.values():
-        if tp[0] == -1:
-            continue
-        else:
-            stack[tp[0]][1].add_child(tp[1])
-    stack[1][1].fix_parents()
-    return stack[1][1]
-
-
-if __name__ == "__main__":
-    start = read_swc_file("neurite_2_v2.0.swc")
-    start.to_swc("output.swc")