diff --git a/.binder/postBuild b/.binder/postBuild index 7119564..06472a5 100755 --- a/.binder/postBuild +++ b/.binder/postBuild @@ -3,10 +3,12 @@ set -ex curl -LsSf https://astral.sh/uv/install.sh | sh source $HOME/.cargo/env uv export \ - --extra jupyter \ - --extra notebooks \ + --group jupyter \ + --group notebooks \ + --no-dev \ > requirements.txt uv pip install \ --requirement requirements.txt \ --system +rm requirements.txt uv cache clean diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 2262b74..edb299e 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -28,7 +28,7 @@ on: jobs: doc: - uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2 + uses: ComPWA/actions/.github/workflows/ci-docs.yml@v2.1 permissions: pages: write id-token: write @@ -37,7 +37,7 @@ jobs: gh-pages: true specific-pip-packages: ${{ inputs.specific-pip-packages }} pytest: - uses: ComPWA/actions/.github/workflows/pytest.yml@v2 + uses: ComPWA/actions/.github/workflows/pytest.yml@v2.1 with: coverage-target: ampform_dpd macos-python-version: "3.9" @@ -46,4 +46,4 @@ jobs: if: inputs.specific-pip-packages == '' secrets: token: ${{ secrets.PAT }} - uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2 + uses: ComPWA/actions/.github/workflows/pre-commit.yml@v2.1 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 25a8e4a..9eca35a 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -13,7 +13,7 @@ repos: - id: check-useless-excludes - repo: https://github.com/ComPWA/policy - rev: 0.5.0 + rev: 0.5.5 hooks: - id: check-dev-files args: @@ -53,7 +53,7 @@ repos: metadata.vscode - repo: https://github.com/astral-sh/ruff-pre-commit - rev: v0.7.0 + rev: v0.7.1 hooks: - id: ruff args: [--fix] @@ -94,7 +94,7 @@ repos: - --in-place - repo: https://github.com/streetsidesoftware/cspell-cli - rev: v8.15.1 + rev: v8.15.2 hooks: - id: cspell @@ -120,11 +120,11 @@ repos: - python - repo: https://github.com/ComPWA/pyright-pre-commit - rev: v1.1.385 + rev: v1.1.386 hooks: - id: pyright - repo: https://github.com/astral-sh/uv-pre-commit - rev: 0.4.24 + rev: 0.4.27 hooks: - id: uv-lock diff --git a/.readthedocs.yml b/.readthedocs.yml index 052363b..5bf7225 100644 --- a/.readthedocs.yml +++ b/.readthedocs.yml @@ -11,7 +11,11 @@ build: pixi global install graphviz uv - |- export UV_LINK_MODE=copy - uv run --extra doc --locked --with tox \ + uv run \ + --group doc \ + --locked \ + --no-dev \ + --with tox \ tox -e doc mkdir -p $READTHEDOCS_OUTPUT mv docs/_build/html $READTHEDOCS_OUTPUT diff --git a/docs/comparison/d2kkk.ipynb b/docs/comparison/d2kkk.ipynb index f23dc3d..96da37f 100644 --- a/docs/comparison/d2kkk.ipynb +++ b/docs/comparison/d2kkk.ipynb @@ -625,7 +625,7 @@ "ax_t1.set_xlabel(Rf\"$\\theta({final_state[2].latex}, {final_state[3].latex})$\")\n", "ax_t2.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[3].latex})$\")\n", "ax_t3.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[2].latex})$\")\n", - "fig.suptitle(f'Selected resonances: ${\", \".join(resonance_selector.value)}$')\n", + "fig.suptitle(f\"Selected resonances: ${', '.join(resonance_selector.value)}$\")\n", "fig.tight_layout()\n", "\n", "lines = None\n", @@ -678,7 +678,7 @@ " kwargs.pop(\"hide_expressions\")\n", " kwargs.pop(\"simplify_expressions\")\n", " selected_resonances = list(resonance_selector.value)\n", - " fig.suptitle(f'Selected resonances: ${\", \".join(selected_resonances)}$')\n", + " fig.suptitle(f\"Selected resonances: ${', '.join(selected_resonances)}$\")\n", " dpd_pars = {k: int(v) for k, v in kwargs.items() if k in dpd_func.parameters}\n", " ampform_pars = {\n", " k: int(v) for k, v in kwargs.items() if k in ampform_func.parameters\n", diff --git a/docs/comparison/jpsi2phipipi.ipynb b/docs/comparison/jpsi2phipipi.ipynb index dad5ea8..c4e2b6a 100644 --- a/docs/comparison/jpsi2phipipi.ipynb +++ b/docs/comparison/jpsi2phipipi.ipynb @@ -611,7 +611,7 @@ "ax_t1.set_xlabel(Rf\"$\\theta({final_state[2].latex}, {final_state[3].latex})$\")\n", "ax_t2.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[3].latex})$\")\n", "ax_t3.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[2].latex})$\")\n", - "fig.suptitle(f'Selected resonances: ${\", \".join(resonance_selector.value)}$')\n", + "fig.suptitle(f\"Selected resonances: ${', '.join(resonance_selector.value)}$\")\n", "fig.tight_layout()\n", "\n", "lines = None\n", @@ -664,7 +664,7 @@ " kwargs.pop(\"hide_expressions\")\n", " kwargs.pop(\"simplify_expressions\")\n", " selected_resonances = list(resonance_selector.value)\n", - " fig.suptitle(f'Selected resonances: ${\", \".join(selected_resonances)}$')\n", + " fig.suptitle(f\"Selected resonances: ${', '.join(selected_resonances)}$\")\n", " dpd_pars = {k: int(v) for k, v in kwargs.items() if k in dpd_func.parameters}\n", " ampform_pars = {\n", " k: int(v) for k, v in kwargs.items() if k in ampform_func.parameters\n", diff --git a/docs/comparison/jpsi2pipipi.ipynb b/docs/comparison/jpsi2pipipi.ipynb index 889ebdc..46fd014 100644 --- a/docs/comparison/jpsi2pipipi.ipynb +++ b/docs/comparison/jpsi2pipipi.ipynb @@ -611,7 +611,7 @@ "ax_t1.set_xlabel(Rf\"$\\theta({final_state[2].latex}, {final_state[3].latex})$\")\n", "ax_t2.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[3].latex})$\")\n", "ax_t3.set_xlabel(Rf\"$\\theta({final_state[1].latex}, {final_state[2].latex})$\")\n", - "fig.suptitle(f'Selected resonances: ${\", \".join(resonance_selector.value)}$')\n", + "fig.suptitle(f\"Selected resonances: ${', '.join(resonance_selector.value)}$\")\n", "fig.tight_layout()\n", "\n", "lines = None\n", @@ -664,7 +664,7 @@ " kwargs.pop(\"hide_expressions\")\n", " kwargs.pop(\"simplify_expressions\")\n", " selected_resonances = list(resonance_selector.value)\n", - " fig.suptitle(f'Selected resonances: ${\", \".join(selected_resonances)}$')\n", + " fig.suptitle(f\"Selected resonances: ${', '.join(selected_resonances)}$\")\n", " dpd_pars = {k: int(v) for k, v in kwargs.items() if k in dpd_func.parameters}\n", " ampform_pars = {\n", " k: int(v) for k, v in kwargs.items() if k in ampform_func.parameters\n", diff --git a/pyproject.toml b/pyproject.toml index ab0c41d..459cab0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -28,6 +28,7 @@ dependencies = [ "ampform >=0.15.1", # aslatex with keyword arguments "attrs >=20.1.0", # on_setattr and https://www.attrs.org/en/stable/api.html#next-gen "cloudpickle", + "numpy~=1.0", "qrules >=0.10.0", "sympy >=1.10", # module sympy.printing.numpy and array expressions with shape kwarg "tensorwaves[jax]", @@ -40,16 +41,30 @@ name = "ampform-dpd" requires-python = ">=3.9" [project.optional-dependencies] +numba = ["tensorwaves[numba]"] +tf = ["tensorwaves[tf]"] + +[project.readme] +content-type = "text/markdown" +file = "README.md" + +[project.urls] +Changelog = "https://github.com/ComPWA/ampform-dpd/releases" +Documentation = "https://compwa.github.io/ampform-dpd" +Source = "https://github.com/ComPWA/ampform-dpd" +Tracker = "https://github.com/ComPWA/ampform-dpd/issues" + +[dependency-groups] dev = [ - "ampform-dpd[doc]", - "ampform-dpd[jupyter]", - "ampform-dpd[sty]", - "ampform-dpd[test]", + "nbmake", + "ruff", "sphinx-autobuild", - "tox", + {include-group = "doc"}, + {include-group = "jupyter"}, + {include-group = "style"}, + {include-group = "test"}, ] doc = [ - "ampform-dpd[notebooks]", "myst-nb", "sphinx-api-relink", "sphinx-book-theme", @@ -59,20 +74,17 @@ doc = [ "sphinx-pybtex-etal-style", "sphinx-togglebutton", "sphinxcontrib-bibtex", -] -jax = [ - "numpy==1.*", - "tensorwaves[jax]", + {include-group = "notebooks"}, ] jupyter = [ - "ampform-dpd[doc]", "jupyterlab", - "jupyterlab-code-formatter >=3.0.0", + "jupyterlab-code-formatter", "jupyterlab-git", "jupyterlab-lsp", "jupyterlab-myst", "python-lsp-ruff", "python-lsp-server[rope]", + {include-group = "notebooks"}, ] notebooks = [ "graphviz", @@ -83,46 +95,20 @@ notebooks = [ "tensorwaves[phsp]", "tqdm", ] -numba = [ - "tensorwaves[numba]", -] -sty = [ - "ampform-dpd[types]", +style = [ "mypy", - "pre-commit-uv", - "ruff", -] -tensorflow = [ - "ampform-dpd[tf]", + {include-group = "types"}, ] test = [ - "nbmake", - "numpy", "pytest", "pytest-cov", "pytest-xdist", ] -tf = [ - "tensorwaves[tf]", -] types = [ - "docutils", - "pybtex", "pytest", - "sphinx", "sphinx-api-relink", ] -[project.readme] -content-type = "text/markdown" -file = "README.md" - -[project.urls] -Changelog = "https://github.com/ComPWA/ampform-dpd/releases" -Documentation = "https://compwa.github.io/ampform-dpd" -Source = "https://github.com/ComPWA/ampform-dpd" -Tracker = "https://github.com/ComPWA/ampform-dpd/issues" - [tool.setuptools] include-package-data = false package-dir = {"" = "src"} @@ -185,6 +171,8 @@ reportUnusedFunction = true reportUnusedImport = true reportUnusedVariable = true typeCheckingMode = "strict" +venv = ".venv" +venvPath = "." [tool.pytest.ini_options] addopts = [ @@ -480,7 +468,4 @@ allowlist_externals = commands = pre-commit run --all-files {posargs} description = Perform all linting, formatting, and spelling checks -setenv = - {[testenv]setenv} - SKIP = pyright """ diff --git a/uv.lock b/uv.lock index c6986e8..95cbdef 100644 --- a/uv.lock +++ b/uv.lock @@ -59,6 +59,7 @@ dependencies = [ { name = "ampform" }, { name = "attrs" }, { name = "cloudpickle" }, + { name = "numpy" }, { name = "qrules" }, { name = "sympy" }, { name = "tensorwaves", extra = ["jax"] }, @@ -66,8 +67,15 @@ dependencies = [ ] [package.optional-dependencies] +numba = [ + { name = "tensorwaves", extra = ["numba"] }, +] +tf = [ + { name = "tensorwaves", extra = ["tf"] }, +] + +[package.dependency-groups] dev = [ - { name = "docutils" }, { name = "graphviz" }, { name = "ipympl" }, { name = "ipywidgets" }, @@ -80,17 +88,13 @@ dev = [ { name = "mypy" }, { name = "myst-nb" }, { name = "nbmake" }, - { name = "numpy" }, { name = "pandas" }, - { name = "pre-commit-uv" }, - { name = "pybtex" }, { name = "pytest" }, { name = "pytest-cov" }, { name = "pytest-xdist" }, { name = "python-lsp-ruff" }, { name = "python-lsp-server", extra = ["rope"] }, { name = "ruff" }, - { name = "sphinx" }, { name = "sphinx-api-relink" }, { name = "sphinx-autobuild" }, { name = "sphinx-book-theme" }, @@ -101,7 +105,6 @@ dev = [ { name = "sphinx-togglebutton" }, { name = "sphinxcontrib-bibtex" }, { name = "tensorwaves", extra = ["phsp"] }, - { name = "tox" }, { name = "tqdm" }, ] doc = [ @@ -122,10 +125,6 @@ doc = [ { name = "tensorwaves", extra = ["phsp"] }, { name = "tqdm" }, ] -jax = [ - { name = "numpy" }, - { name = "tensorwaves", extra = ["jax"] }, -] jupyter = [ { name = "graphviz" }, { name = "ipympl" }, @@ -136,18 +135,9 @@ jupyter = [ { name = "jupyterlab-lsp" }, { name = "jupyterlab-myst" }, { name = "matplotlib" }, - { name = "myst-nb" }, { name = "pandas" }, { name = "python-lsp-ruff" }, { name = "python-lsp-server", extra = ["rope"] }, - { name = "sphinx-api-relink" }, - { name = "sphinx-book-theme" }, - { name = "sphinx-codeautolink", extra = ["ipython"] }, - { name = "sphinx-copybutton" }, - { name = "sphinx-design" }, - { name = "sphinx-pybtex-etal-style" }, - { name = "sphinx-togglebutton" }, - { name = "sphinxcontrib-bibtex" }, { name = "tensorwaves", extra = ["phsp"] }, { name = "tqdm" }, ] @@ -160,101 +150,126 @@ notebooks = [ { name = "tensorwaves", extra = ["phsp"] }, { name = "tqdm" }, ] -numba = [ - { name = "tensorwaves", extra = ["numba"] }, -] -sty = [ - { name = "docutils" }, +style = [ { name = "mypy" }, - { name = "pre-commit-uv" }, - { name = "pybtex" }, { name = "pytest" }, - { name = "ruff" }, - { name = "sphinx" }, { name = "sphinx-api-relink" }, ] -tensorflow = [ - { name = "tensorwaves", extra = ["tf"] }, -] test = [ - { name = "nbmake" }, - { name = "numpy" }, { name = "pytest" }, { name = "pytest-cov" }, { name = "pytest-xdist" }, ] -tf = [ - { name = "tensorwaves", extra = ["tf"] }, -] types = [ - { name = "docutils" }, - { name = "pybtex" }, { name = "pytest" }, - { name = "sphinx" }, { name = "sphinx-api-relink" }, ] [package.metadata] requires-dist = [ { name = "ampform", specifier = ">=0.15.1" }, - { name = "ampform-dpd", extras = ["doc"], marker = "extra == 'dev'" }, - { name = "ampform-dpd", extras = ["doc"], marker = "extra == 'jupyter'" }, - { name = "ampform-dpd", extras = ["jupyter"], marker = "extra == 'dev'" }, - { name = "ampform-dpd", extras = ["notebooks"], marker = "extra == 'doc'" }, - { name = "ampform-dpd", extras = ["sty"], marker = "extra == 'dev'" }, - { name = "ampform-dpd", extras = ["test"], marker = "extra == 'dev'" }, - { name = "ampform-dpd", extras = ["tf"], marker = "extra == 'tensorflow'" }, - { name = "ampform-dpd", extras = ["types"], marker = "extra == 'sty'" }, { name = "attrs", specifier = ">=20.1.0" }, { name = "cloudpickle" }, - { name = "docutils", marker = "extra == 'types'" }, - { name = "graphviz", marker = "extra == 'notebooks'" }, - { name = "ipympl", marker = "extra == 'notebooks'" }, - { name = "ipywidgets", marker = "extra == 'notebooks'" }, - { name = "jupyterlab", marker = "extra == 'jupyter'" }, - { name = "jupyterlab-code-formatter", marker = "extra == 'jupyter'", specifier = ">=3.0.0" }, - { name = "jupyterlab-git", marker = "extra == 'jupyter'" }, - { name = "jupyterlab-lsp", marker = "extra == 'jupyter'" }, - { name = "jupyterlab-myst", marker = "extra == 'jupyter'" }, - { name = "matplotlib", marker = "extra == 'notebooks'" }, - { name = "mypy", marker = "extra == 'sty'" }, - { name = "myst-nb", marker = "extra == 'doc'" }, - { name = "nbmake", marker = "extra == 'test'" }, - { name = "numpy", marker = "extra == 'jax'", specifier = "==1.*" }, - { name = "numpy", marker = "extra == 'test'" }, - { name = "pandas", marker = "extra == 'notebooks'" }, - { name = "pre-commit-uv", marker = "extra == 'sty'" }, - { name = "pybtex", marker = "extra == 'types'" }, - { name = "pytest", marker = "extra == 'test'" }, - { name = "pytest", marker = "extra == 'types'" }, - { name = "pytest-cov", marker = "extra == 'test'" }, - { name = "pytest-xdist", marker = "extra == 'test'" }, - { name = "python-lsp-ruff", marker = "extra == 'jupyter'" }, - { name = "python-lsp-server", extras = ["rope"], marker = "extra == 'jupyter'" }, + { name = "numpy", specifier = "~=1.0" }, { name = "qrules", specifier = ">=0.10.0" }, - { name = "ruff", marker = "extra == 'sty'" }, - { name = "sphinx", marker = "extra == 'types'" }, - { name = "sphinx-api-relink", marker = "extra == 'doc'" }, - { name = "sphinx-api-relink", marker = "extra == 'types'" }, - { name = "sphinx-autobuild", marker = "extra == 'dev'" }, - { name = "sphinx-book-theme", marker = "extra == 'doc'" }, - { name = "sphinx-codeautolink", extras = ["ipython"], marker = "extra == 'doc'" }, - { name = "sphinx-copybutton", marker = "extra == 'doc'" }, - { name = "sphinx-design", marker = "extra == 'doc'" }, - { name = "sphinx-pybtex-etal-style", marker = "extra == 'doc'" }, - { name = "sphinx-togglebutton", marker = "extra == 'doc'" }, - { name = "sphinxcontrib-bibtex", marker = "extra == 'doc'" }, { name = "sympy", specifier = ">=1.10" }, { name = "tensorwaves", extras = ["jax"] }, - { name = "tensorwaves", extras = ["jax"], marker = "extra == 'jax'" }, { name = "tensorwaves", extras = ["numba"], marker = "extra == 'numba'" }, - { name = "tensorwaves", extras = ["phsp"], marker = "extra == 'notebooks'" }, { name = "tensorwaves", extras = ["tf"], marker = "extra == 'tf'" }, - { name = "tox", marker = "extra == 'dev'" }, - { name = "tqdm", marker = "extra == 'notebooks'" }, { name = "typing-extensions", marker = "python_full_version < '3.11'" }, ] +[package.metadata.dependency-groups] +dev = [ + { name = "graphviz" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = "jupyterlab" }, + { name = "jupyterlab-code-formatter" }, + { name = "jupyterlab-git" }, + { name = "jupyterlab-lsp" }, + { name = "jupyterlab-myst" }, + { name = "matplotlib" }, + { name = "mypy" }, + { name = "myst-nb" }, + { name = "nbmake" }, + { name = "pandas" }, + { name = "pytest" }, + { name = "pytest-cov" }, + { name = "pytest-xdist" }, + { name = "python-lsp-ruff" }, + { name = "python-lsp-server", extras = ["rope"] }, + { name = "ruff" }, + { name = "sphinx-api-relink" }, + { name = "sphinx-autobuild" }, + { name = "sphinx-book-theme" }, + { name = "sphinx-codeautolink", extras = ["ipython"] }, + { name = "sphinx-copybutton" }, + { name = "sphinx-design" }, + { name = "sphinx-pybtex-etal-style" }, + { name = "sphinx-togglebutton" }, + { name = "sphinxcontrib-bibtex" }, + { name = "tensorwaves", extras = ["phsp"] }, + { name = "tqdm" }, +] +doc = [ + { name = "graphviz" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = "matplotlib" }, + { name = "myst-nb" }, + { name = "pandas" }, + { name = "sphinx-api-relink" }, + { name = "sphinx-book-theme" }, + { name = "sphinx-codeautolink", extras = ["ipython"] }, + { name = "sphinx-copybutton" }, + { name = "sphinx-design" }, + { name = "sphinx-pybtex-etal-style" }, + { name = "sphinx-togglebutton" }, + { name = "sphinxcontrib-bibtex" }, + { name = "tensorwaves", extras = ["phsp"] }, + { name = "tqdm" }, +] +jupyter = [ + { name = "graphviz" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = "jupyterlab" }, + { name = "jupyterlab-code-formatter" }, + { name = "jupyterlab-git" }, + { name = "jupyterlab-lsp" }, + { name = "jupyterlab-myst" }, + { name = "matplotlib" }, + { name = "pandas" }, + { name = "python-lsp-ruff" }, + { name = "python-lsp-server", extras = ["rope"] }, + { name = "tensorwaves", extras = ["phsp"] }, + { name = "tqdm" }, +] +notebooks = [ + { name = "graphviz" }, + { name = "ipympl" }, + { name = "ipywidgets" }, + { name = "matplotlib" }, + { name = "pandas" }, + { name = "tensorwaves", extras = ["phsp"] }, + { name = "tqdm" }, +] +style = [ + { name = "mypy" }, + { name = "pytest" }, + { name = "sphinx-api-relink" 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