From 8bceeec7972db7ba65060e62fbbce3221014cb56 Mon Sep 17 00:00:00 2001
From: Vitor Shen <17490173+shenvitor@users.noreply.github.com>
Date: Thu, 22 Aug 2024 11:31:19 +0200
Subject: [PATCH 1/3] replace nbstripout by nbclean using the example

https://github.com/srstevenson/nb-clean
---
 .pre-commit-config.yaml | 17 ++++++++---------
 1 file changed, 8 insertions(+), 9 deletions(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 4b883c2..f0c9997 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -33,17 +33,16 @@ repos:
             .*\.py
           )$
 
-  - repo: https://github.com/kynan/nbstripout
-    rev: 0.7.1
+  - repo: https://github.com/srstevenson/nb-clean
+    rev: 3.3.0
     hooks:
-      - id: nbstripout
+      - id: nb-clean
         args:
-          - --extra-keys
-          - |
-            cell.attachments
-            cell.metadata.editable
-            cell.metadata.id
-            cell.metadata.slideshow
+          - --remove-empty-cells
+          - --preserve-cell-metadata
+          - tags
+          - slideshow
+          - --
 
   - repo: https://github.com/pre-commit/mirrors-prettier
     rev: v4.0.0-alpha.8

From 4420106723e3560b8f1754e7ee442ac684ddff9a Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Thu, 22 Aug 2024 09:34:36 +0000
Subject: [PATCH 2/3] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 docs/eta-pi-p/automated.ipynb      | 39 +-------------
 docs/eta-pi-p/manual.ipynb         | 24 +--------
 docs/eta-pi-p/pgamma-state.ipynb   | 16 +-----
 docs/lambda-k-pi/ampform-dpd.ipynb | 81 ++----------------------------
 docs/lambda-k-pi/ampform.ipynb     | 45 +----------------
 5 files changed, 9 insertions(+), 196 deletions(-)

diff --git a/docs/eta-pi-p/automated.ipynb b/docs/eta-pi-p/automated.ipynb
index e71ea69..b1c3288 100644
--- a/docs/eta-pi-p/automated.ipynb
+++ b/docs/eta-pi-p/automated.ipynb
@@ -18,12 +18,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
     "tags": [
      "hide-input"
     ]
@@ -133,9 +127,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -183,9 +174,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -201,9 +189,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -222,9 +207,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -291,9 +273,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "scroll-input"
@@ -326,12 +305,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Collect resonances for each subsystem"
-    },
     "tags": [
      "hide-input"
     ]
@@ -353,12 +326,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Design slider UI"
-    },
     "tags": [
      "hide-input"
     ]
@@ -400,9 +367,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width",
@@ -502,8 +466,7 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.12.5"
+   "pygments_lexer": "ipython3"
   }
  },
  "nbformat": 4,
diff --git a/docs/eta-pi-p/manual.ipynb b/docs/eta-pi-p/manual.ipynb
index af29991..503e3fd 100644
--- a/docs/eta-pi-p/manual.ipynb
+++ b/docs/eta-pi-p/manual.ipynb
@@ -41,9 +41,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
     "tags": [
      "hide-cell"
     ]
@@ -320,9 +317,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-cell"
     ]
@@ -431,9 +425,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -516,9 +507,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "scroll-input",
@@ -569,9 +557,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -628,9 +613,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -670,9 +652,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -743,8 +722,7 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.12.5"
+   "pygments_lexer": "ipython3"
   }
  },
  "nbformat": 4,
diff --git a/docs/eta-pi-p/pgamma-state.ipynb b/docs/eta-pi-p/pgamma-state.ipynb
index 97a3e35..bc7056b 100644
--- a/docs/eta-pi-p/pgamma-state.ipynb
+++ b/docs/eta-pi-p/pgamma-state.ipynb
@@ -39,12 +39,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
     "tags": [
      "hide-cell"
     ]
@@ -562,13 +556,6 @@
     "print(\"found\", len(reaction.transitions), \"solutions!\")\n",
     "reaction.get_intermediate_particles().names"
    ]
-  },
-  {
-   "cell_type": "code",
-   "execution_count": null,
-   "metadata": {},
-   "outputs": [],
-   "source": []
   }
  ],
  "metadata": {
@@ -586,8 +573,7 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.12.4"
+   "pygments_lexer": "ipython3"
   }
  },
  "nbformat": 4,
diff --git a/docs/lambda-k-pi/ampform-dpd.ipynb b/docs/lambda-k-pi/ampform-dpd.ipynb
index 51635bd..1a08bdf 100644
--- a/docs/lambda-k-pi/ampform-dpd.ipynb
+++ b/docs/lambda-k-pi/ampform-dpd.ipynb
@@ -19,12 +19,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
     "tags": [
      "hide-input"
     ]
@@ -88,9 +82,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "scroll-output",
      "full-width",
@@ -273,9 +264,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -289,11 +277,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "decay = to_three_body_decay(reaction.transitions)\n",
@@ -337,11 +321,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def formulate_breit_wigner(\n",
@@ -403,9 +383,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "scroll-output"
@@ -421,12 +398,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Model parameters"
-    },
     "tags": [
      "scroll-output",
      "hide-input"
@@ -443,9 +414,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "mystnb": {
-     "code_prompt_show": "Kinematic variable definitions"
-    },
     "tags": [
      "hide-input",
      "scroll-output"
@@ -480,11 +448,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "i, j = 3, 1\n",
@@ -497,12 +461,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Define meshgrid"
-    },
     "tags": [
      "hide-input"
     ]
@@ -531,12 +489,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Define data transformer"
-    },
     "tags": [
      "hide-input"
     ]
@@ -562,12 +514,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Collect resonance names per sub-system"
-    },
     "tags": [
      "hide-output",
      "hide-input",
@@ -591,12 +537,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Design slider UI"
-    },
     "tags": [
      "hide-input"
     ]
@@ -716,12 +656,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Define functions for inserting phase"
-    },
     "tags": [
      "hide-input"
     ]
@@ -746,9 +680,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -797,9 +728,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width",
@@ -897,8 +825,7 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.12.5"
+   "pygments_lexer": "ipython3"
   }
  },
  "nbformat": 4,
diff --git a/docs/lambda-k-pi/ampform.ipynb b/docs/lambda-k-pi/ampform.ipynb
index 20f95dc..4d12224 100644
--- a/docs/lambda-k-pi/ampform.ipynb
+++ b/docs/lambda-k-pi/ampform.ipynb
@@ -19,12 +19,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Import Python libraries"
-    },
     "tags": [
      "hide-input"
     ]
@@ -88,9 +82,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "scroll-output",
      "full-width",
@@ -272,9 +263,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input"
     ]
@@ -330,9 +318,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "scroll-output"
@@ -348,9 +333,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "mystnb": {
-     "code_prompt_show": "Model parameters"
-    },
     "tags": [
      "scroll-output",
      "hide-input"
@@ -365,9 +347,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "mystnb": {
-     "code_prompt_show": "Kinematic variable definitions"
-    },
     "tags": [
      "hide-input",
      "scroll-output"
@@ -435,9 +414,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-output",
      "hide-input"
@@ -460,12 +436,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
-    "mystnb": {
-     "code_prompt_show": "Design slider UI"
-    },
     "tags": [
      "hide-input"
     ]
@@ -583,11 +553,7 @@
   {
    "cell_type": "code",
    "execution_count": null,
-   "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    }
-   },
+   "metadata": {},
    "outputs": [],
    "source": [
     "def insert_phi(parameters: dict) -> dict:\n",
@@ -608,9 +574,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width"
@@ -666,9 +629,6 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "jupyter": {
-     "source_hidden": true
-    },
     "tags": [
      "hide-input",
      "full-width",
@@ -765,8 +725,7 @@
    "mimetype": "text/x-python",
    "name": "python",
    "nbconvert_exporter": "python",
-   "pygments_lexer": "ipython3",
-   "version": "3.12.5"
+   "pygments_lexer": "ipython3"
   }
  },
  "nbformat": 4,

From fc60498126a6044910d6530f866f0613f8932836 Mon Sep 17 00:00:00 2001
From: Vitor Shen <17490173+shenvitor@users.noreply.github.com>
Date: Thu, 22 Aug 2024 11:51:20 +0200
Subject: [PATCH 3/3] update

---
 .pre-commit-config.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index f0c9997..8c247e1 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -41,7 +41,8 @@ repos:
           - --remove-empty-cells
           - --preserve-cell-metadata
           - tags
-          - slideshow
+          - jupyter
+          - mystnb
           - --
 
   - repo: https://github.com/pre-commit/mirrors-prettier