NAMESPACE

# Generated by roxygen2: do not edit by hand

export(combine_methrix)
export(convert_HDF5_methrix)
export(convert_methrix)
export(coverage_filter)
export(extract_CPGs)
export(get_matrix)
export(get_region_summary)
export(get_stats)
export(load_HDF5_methrix)
export(mask_methrix)
export(methrix2bsseq)
export(methrix_pca)
export(methrix_report)
export(order_by_sd)
export(plot_coverage)
export(plot_density)
export(plot_pca)
export(plot_stats)
export(plot_violin)
export(read_bedgraphs)
export(region_filter)
export(remove_snps)
export(remove_uncovered)
export(save_HDF5_methrix)
export(subset_methrix)
export(write_bedgraphs)
export(write_bigwigs)
exportClasses(methrix)
import(DelayedArray)
import(DelayedMatrixStats)
import(HDF5Array)
import(SummarizedExperiment)
import(data.table, except = c(shift, first, second))
import(ggplot2)
import(parallel)
importClassesFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(BSgenome,getBSgenome)
importFrom(BSgenome,installed.genomes)
importFrom(BSgenome,score)
importFrom(BSgenome,seqnames)
importFrom(graphics,axis)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,mtext)
importFrom(graphics,par)
importFrom(graphics,plot)
importFrom(graphics,title)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(rtracklayer,export)
importFrom(stats,complete.cases)
importFrom(stats,cov)
importFrom(stats,density)
importFrom(stats,median)
importFrom(stats,prcomp)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(utils,browseURL)
importFrom(S4Vectors,metadata)
importFrom("graphics", "barplot", "points")