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What is the file corresponding to [orthofinder] in the 'generate_kinfin_input.py' script? #52

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PleniumJS opened this issue Aug 30, 2024 · 0 comments

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@PleniumJS
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Hello.

I extracted Orthogroups using OrthoFinder. I wanted to classify only clusters that have more than 70% Single-Copy genes among the taxa, so I tried using KinFin.

However, when I use the default 'KinFin', an error occurs.

I tried using 'generate_kinfin_input.py' in the script, but only the following message appears.

Usage:
generate_kinfin_input.py -f

[-o ] [orthofinder] [config]

Here, which file should I use for [orthofinder]?

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