From d9d47f8170f87f6ce00e8601eab83ac055189925 Mon Sep 17 00:00:00 2001 From: David Manthey Date: Fri, 14 May 2021 16:49:41 -0400 Subject: [PATCH] Delay import of the tile source. Otherwise, some settings used may not be the values in the girder.cfg file as it hasn't been loaded yet. --- wsi_deid/process.py | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/wsi_deid/process.py b/wsi_deid/process.py index 937a1f77..bb4e2db8 100644 --- a/wsi_deid/process.py +++ b/wsi_deid/process.py @@ -11,7 +11,6 @@ from girder_large_image.models.image_item import ImageItem from large_image.tilesource import dictToEtree -import large_image_source_tiff.girder_source import tifftools @@ -426,6 +425,8 @@ def redact_format_aperio(item, tempdir, redactList, title, labelImage): :returns: (filepath, mimetype) The redacted filepath in the tempdir and its mimetype. """ + import large_image_source_tiff.girder_source + tileSource = ImageItem().tileSource(item) sourcePath = tileSource._getLargeImagePath() tiffinfo = tifftools.read_tiff(sourcePath)