diff --git a/src/ontology/components/mondo_efo_import.owl b/src/ontology/components/mondo_efo_import.owl index dff5e47f..9030e45d 100644 --- a/src/ontology/components/mondo_efo_import.owl +++ b/src/ontology/components/mondo_efo_import.owl @@ -1174,6 +1174,7 @@ Declaration(Class(obo:MONDO_0005148)) Declaration(Class(obo:MONDO_0005149)) Declaration(Class(obo:MONDO_0005178)) Declaration(Class(obo:MONDO_0005180)) +Declaration(Class(obo:MONDO_0005184)) Declaration(Class(obo:MONDO_0005232)) Declaration(Class(obo:MONDO_0005247)) Declaration(Class(obo:MONDO_0005271)) @@ -10350,7 +10351,6 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) -Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -40190,6 +40190,36 @@ AnnotationAssertion(rdfs:label obo:MONDO_0005180 "Parkinson disease"^^xsd:string SubClassOf(Annotation(oboInOwl:source "MESH:D010300"^^xsd:string) obo:MONDO_0005180 obo:MONDO_0021095) SubClassOf(obo:MONDO_0005180 ) +# Class: obo:MONDO_0005184 (pancreatic ductal adenocarcinoma) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) obo:IAO_0000115 obo:MONDO_0005184 "An infiltrating adenocarcinoma that arises from the epithelial cells of the pancreas. It affects males more often than females and the patients are usually over 50 years of age. Microscopically it is characterized by the presence of glandular (ductal) differentiation and desmoplastic stroma formation. Signs and symptoms include pain, loss of weight, and jaundice. It grows rapidly and is usually detected after it has metastasized to other anatomic sites. The prognosis is usually poor."^^xsd:string) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 ) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 ) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 ) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 obo:DOID_3498) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 obo:DOID_3587) +AnnotationAssertion(mondo:exactMatch obo:MONDO_0005184 obo:NCIT_C9120) +AnnotationAssertion(Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "DOID:3498"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "DOID:3587"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "EFO:0002517"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "ICD9:157.3"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "MESH:D021441"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "NCIT:C9120"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "UMLS:C0887833"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) Annotation(oboInOwl:source "NCIT:C9120"^^xsd:string) oboInOwl:hasDbXref obo:MONDO_0005184 "UMLS:C1335302"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "ductal adenocarcinoma of pancreas"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3498"^^xsd:string) Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "ductal adenocarcinoma of the pancreas"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3587"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "malignant neoplasm of duct of Wirsung"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "pancreas ductal adenocarcinoma"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MONDO:patterns/location"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "pancreatic duct adenocarcinoma"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3587"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "pancreatic duct cancer"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "pancreatic ductal adenocarcinoma"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MONDO:0002699"^^xsd:string) oboInOwl:hasExactSynonym obo:MONDO_0005184 "pancreatic ductal carcinoma"^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasRelatedSynonym obo:MONDO_0005184 "pancreatic tubular adenocarcinoma"^^xsd:string) +AnnotationAssertion(oboInOwl:id obo:MONDO_0005184 "MONDO:0005184"^^xsd:string) +AnnotationAssertion(rdfs:label obo:MONDO_0005184 "pancreatic ductal adenocarcinoma"^^xsd:string) +SubClassOf(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "MONDO:Redundant"^^xsd:string) Annotation(oboInOwl:source "NCIT:C9120"^^xsd:string) obo:MONDO_0005184 ) + # Class: obo:MONDO_0005232 (large cell carcinoma) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C3780"^^xsd:string) obo:IAO_0000115 obo:MONDO_0005232 "A malignant epithelial neoplasm composed of large, atypical cells."^^xsd:string) @@ -276470,36 +276500,6 @@ AnnotationAssertion(oboInOwl:id "EFO:0002 SubClassOf(Annotation(oboInOwl:source "MONDO:Redundant"^^xsd:string) Annotation(oboInOwl:source "NCIT:C4060"^^xsd:string) obo:MONDO_0002369) SubClassOf( ) -# Class: () - -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) obo:IAO_0000115 "An infiltrating adenocarcinoma that arises from the epithelial cells of the pancreas. It affects males more often than females and the patients are usually over 50 years of age. Microscopically it is characterized by the presence of glandular (ductal) differentiation and desmoplastic stroma formation. Signs and symptoms include pain, loss of weight, and jaundice. It grows rapidly and is usually detected after it has metastasized to other anatomic sites. The prognosis is usually poor."^^xsd:string) -AnnotationAssertion(mondo:exactMatch ) -AnnotationAssertion(mondo:exactMatch ) -AnnotationAssertion(mondo:exactMatch ) -AnnotationAssertion(mondo:exactMatch obo:DOID_3498) -AnnotationAssertion(mondo:exactMatch obo:DOID_3587) -AnnotationAssertion(mondo:exactMatch obo:NCIT_C9120) -AnnotationAssertion(Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref "DOID:3498"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref "DOID:3587"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) oboInOwl:hasDbXref "ICD9:157.3"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref "MESH:D021441"^^xsd:string) -AnnotationAssertion(oboInOwl:hasDbXref "MONDO:0005184"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "EFO:0002517"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "DOID:3587"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) oboInOwl:hasDbXref "UMLS:C0887833"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "MONDO:equivalentTo"^^xsd:string) Annotation(oboInOwl:source "NCIT:C9120"^^xsd:string) oboInOwl:hasDbXref "UMLS:C1335302"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym "ductal adenocarcinoma of pancreas"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3498"^^xsd:string) Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym "ductal adenocarcinoma of the pancreas"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3587"^^xsd:string) oboInOwl:hasExactSynonym "malignant neoplasm of duct of Wirsung"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym "pancreas ductal adenocarcinoma"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MONDO:patterns/location"^^xsd:string) oboInOwl:hasExactSynonym "pancreatic duct adenocarcinoma"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "DOID:3587"^^xsd:string) oboInOwl:hasExactSynonym "pancreatic duct cancer"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasExactSynonym "pancreatic ductal adenocarcinoma"^^xsd:string) -AnnotationAssertion(Annotation(rdfs:comment "preferred label from MONDO"^^xsd:string) oboInOwl:hasExactSynonym "pancreatic ductal adenocarcinoma"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MONDO:0002699"^^xsd:string) oboInOwl:hasExactSynonym "pancreatic ductal carcinoma"^^xsd:string) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C9120"^^xsd:string) oboInOwl:hasRelatedSynonym "pancreatic tubular adenocarcinoma"^^xsd:string) -AnnotationAssertion(oboInOwl:id "EFO:0002517"^^xsd:string) -SubClassOf(Annotation(oboInOwl:source "DOID:3498"^^xsd:string) Annotation(oboInOwl:source "MONDO:Redundant"^^xsd:string) Annotation(oboInOwl:source "NCIT:C9120"^^xsd:string) ) - # Class: () AnnotationAssertion(Annotation(oboInOwl:hasDbXref "MESH:D015526"^^xsd:string) obo:IAO_0000115 "A neurologic condition associated with the ACQUIRED IMMUNODEFICIENCY SYNDROME and characterized by impaired concentration and memory, slowness of hand movements, ATAXIA, incontinence, apathy, and gait difficulties associated with HIV-1 viral infection of the central nervous system. Pathologic examination of the brain reveals white matter rarefaction, perivascular infiltrates of lymphocytes, foamy macrophages, and multinucleated giant cells. (From Adams et al., Principles of Neurology, 6th ed, pp760-1; N Engl J Med, 1995 Apr 6;332(14):934-40)"^^xsd:string) @@ -318336,7 +318336,7 @@ AnnotationAssertion(Annotation(oboInOwl:hasDbXref "NCIT:C5722"^^xsd:string) oboI AnnotationAssertion(Annotation(rdfs:comment "preferred label from MONDO"^^xsd:string) oboInOwl:hasExactSynonym "undifferentiated pancreatic carcinoma"^^xsd:string) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "ONCOTREE:UCP"^^xsd:string) Annotation(oboInOwl:hasSynonymType mondo:ABBREVIATION) oboInOwl:hasRelatedSynonym "UCP"^^xsd:string) AnnotationAssertion(oboInOwl:id "EFO:1000606"^^xsd:string) -SubClassOf(Annotation(oboInOwl:source "EFO:1000606"^^xsd:string) Annotation(oboInOwl:source "NCIT:C5722"^^xsd:string) ) +SubClassOf(Annotation(oboInOwl:source "EFO:1000606"^^xsd:string) Annotation(oboInOwl:source "NCIT:C5722"^^xsd:string) obo:MONDO_0005184) SubClassOf( ) # Class: () diff --git a/src/ontology/components/mondo_efo_mappings.owl b/src/ontology/components/mondo_efo_mappings.owl index 36e8593f..b4148800 100644 --- a/src/ontology/components/mondo_efo_mappings.owl +++ b/src/ontology/components/mondo_efo_mappings.owl @@ -2127,14 +2127,6 @@ - - - - MONDO:0005184 - - - - diff --git a/src/ontology/efo-edit.owl b/src/ontology/efo-edit.owl index 2322786f..3b9e4703 100644 --- a/src/ontology/efo-edit.owl +++ b/src/ontology/efo-edit.owl @@ -98650,19 +98650,22 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002516 "Vagus nerve nodose AnnotationAssertion(rdfs:label efo:EFO_0002516 "obsolete_inferior ganglion of vagus nerve") AnnotationAssertion(owl:deprecated efo:EFO_0002516 "true"^^xsd:boolean) -# Class: efo:EFO_0002517 (pancreatic ductal adenocarcinoma) +# Class: efo:EFO_0002517 (obsolete_pancreatic ductal adenocarcinoma) AnnotationAssertion(obo:IAO_0000115 efo:EFO_0002517 "An infiltrating adenocarcinoma that arises from the epithelial cells of the pancreas. It affects males more often than females and the patients are usually over 50 years of age. Microscopically it is characterized by the presence of glandular (ductal) differentiation and desmoplastic stroma formation. Signs and symptoms include pain, loss of weight, and jaundice. It grows rapidly and is usually detected after it has metastasized to other anatomic sites. The prognosis is usually poor.") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002517 "Ele Holloway") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002517 "James Malone") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002517 "Sirarat Sarntivijai") +AnnotationAssertion(obo:IAO_0100001 efo:EFO_0002517 "http://purl.obolibrary.org/obo/MONDO_0005184") +AnnotationAssertion(efo:obsoleted_in_version efo:EFO_0002517 "3.61.0") +AnnotationAssertion(efo:reason_for_obsolescence efo:EFO_0002517 "Duplicated Use: http://purl.obolibrary.org/obo/MONDO_0005184") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002517 "DOID:3498") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002517 "DOID:3587") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_0002517 "NCIt:C9120") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002517 "PDAC") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002517 "pancreatic ductal carcinoma") -AnnotationAssertion(rdfs:label efo:EFO_0002517 "pancreatic ductal adenocarcinoma") -SubClassOf(efo:EFO_0002517 ObjectSomeValuesFrom(efo:EFO_0000784 obo:UBERON_0001264)) +AnnotationAssertion(rdfs:label efo:EFO_0002517 "obsolete_pancreatic ductal adenocarcinoma") +AnnotationAssertion(owl:deprecated efo:EFO_0002517 "true"^^xsd:boolean) # Class: efo:EFO_0002518 (raphe magnus) @@ -100379,7 +100382,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002709 "BxPC3") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002709 "BxPC3 cell") AnnotationAssertion(rdfs:label efo:EFO_0002709 "BxPC-3") SubClassOf(efo:EFO_0002709 obo:CL_0000010) -SubClassOf(efo:EFO_0002709 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002709 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002709 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(efo:EFO_0000324 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(efo:EFO_0000635 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) # Class: efo:EFO_0002710 (COLO357) @@ -100388,7 +100391,7 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002710 "Ele Holloway") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002710 "James Malone") AnnotationAssertion(rdfs:label efo:EFO_0002710 "COLO357") SubClassOf(efo:EFO_0002710 obo:CL_0000010) -SubClassOf(efo:EFO_0002710 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002710 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002710 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(efo:EFO_0000324 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(efo:EFO_0000635 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) # Class: efo:EFO_0002711 (F13) @@ -100432,7 +100435,7 @@ AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002713 "PANC-1") AnnotationAssertion(rdfs:label efo:EFO_0002713 "Panc1") SubClassOf(efo:EFO_0002713 obo:CL_0000010) SubClassOf(efo:EFO_0002713 ObjectSomeValuesFrom(obo:OBI_0000295 efo:EFO_0002925)) -SubClassOf(efo:EFO_0002713 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002713 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002713 ObjectSomeValuesFrom(obo:RO_0000086 obo:PATO_0000384)) SubClassOf(efo:EFO_0002713 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0001264 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) @@ -100443,7 +100446,7 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002714 "James Malone") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002714 "T3M4") AnnotationAssertion(rdfs:label efo:EFO_0002714 "Panc89") SubClassOf(efo:EFO_0002714 obo:CL_0000010) -SubClassOf(efo:EFO_0002714 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002714 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002714 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(efo:EFO_0000324 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(efo:EFO_0000635 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) # Class: efo:EFO_0002715 (PancTUI) @@ -100453,7 +100456,7 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002715 "James Malone") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0002715 "PancTu-I") AnnotationAssertion(rdfs:label efo:EFO_0002715 "PancTUI") SubClassOf(efo:EFO_0002715 obo:CL_0000010) -SubClassOf(efo:EFO_0002715 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002715 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002715 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(efo:EFO_0000324 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(efo:EFO_0000635 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) # Class: efo:EFO_0002716 (Pt45P1) @@ -100462,7 +100465,7 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002716 "Ele Holloway") AnnotationAssertion(obo:IAO_0000117 efo:EFO_0002716 "James Malone") AnnotationAssertion(rdfs:label efo:EFO_0002716 "Pt45P1") SubClassOf(efo:EFO_0002716 obo:CL_0000010) -SubClassOf(efo:EFO_0002716 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0002716 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0002716 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(efo:EFO_0000324 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(efo:EFO_0000635 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) # Class: efo:EFO_0002717 (SH-SY5Y) @@ -135196,7 +135199,7 @@ AnnotationAssertion(efo:definition_citation efo:EFO_0006392 "PMID: 2543550") AnnotationAssertion(oboInOwl:hasExactSynonym efo:EFO_0006392 "FA-6") AnnotationAssertion(rdfs:label efo:EFO_0006392 "FA6") SubClassOf(efo:EFO_0006392 obo:CL_0000010) -SubClassOf(efo:EFO_0006392 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0006392 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0006392 ObjectSomeValuesFrom(obo:RO_0000086 obo:PATO_0000383)) # Class: efo:EFO_0006393 (Farage) @@ -136294,7 +136297,7 @@ AnnotationAssertion(obo:IAO_0000115 efo:EFO_0006494 "Human pancreatic ductal car AnnotationAssertion(efo:definition_citation efo:EFO_0006494 "http://www.atcc.org/products/all/CRL-1837.aspx") AnnotationAssertion(rdfs:label efo:EFO_0006494 "SU.86.86") SubClassOf(efo:EFO_0006494 obo:CL_0000010) -SubClassOf(efo:EFO_0006494 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0006494 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0006494 ObjectSomeValuesFrom(obo:RO_0000086 obo:PATO_0000383)) # Class: efo:EFO_0006495 (SUIT-2) @@ -137754,7 +137757,7 @@ AnnotationAssertion(obo:IAO_0000117 efo:EFO_0006623 "Laura Huerta") AnnotationAssertion(efo:definition_citation efo:EFO_0006623 "http://bioinfoweb.com/CLDB-KP-4.htm") AnnotationAssertion(rdfs:label efo:EFO_0006623 "KP-4") SubClassOf(efo:EFO_0006623 obo:CL_0000010) -SubClassOf(efo:EFO_0006623 ObjectSomeValuesFrom(obo:RO_0000053 efo:EFO_0002517)) +SubClassOf(efo:EFO_0006623 ObjectSomeValuesFrom(obo:RO_0000053 obo:MONDO_0005184)) SubClassOf(efo:EFO_0006623 ObjectSomeValuesFrom(obo:RO_0000086 obo:PATO_0000384)) SubClassOf(efo:EFO_0006623 ObjectSomeValuesFrom(obo:RO_0001000 ObjectIntersectionOf(obo:CL_0000066 ObjectSomeValuesFrom(obo:BFO_0000050 ObjectIntersectionOf(obo:UBERON_0001264 ObjectSomeValuesFrom(obo:BFO_0000050 obo:NCBITaxon_9606)))))) @@ -246372,6 +246375,7 @@ SubClassOf(efo:EFO_1000605 ObjectSomeValuesFrom(efo:EFO_0000784 ObjectUnionOf(ob AnnotationAssertion(obo:IAO_0000115 efo:EFO_1000606 "A carcinoma with poor prognosis that arises from the pancreas. It is characterized by the presence of a significant malignant component that does not show differentiation. The malignant cells represent a mixture of large, pleomorphic cells and giant cells, or adenocarcinoma cells and spindle cells, or spindle cells.") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_1000606 "NCIt:C5722") AnnotationAssertion(rdfs:label efo:EFO_1000606 "Undifferentiated Pancreatic Carcinoma") +SubClassOf(efo:EFO_1000606 obo:MONDO_0005184) SubClassOf(efo:EFO_1000606 efo:EFO_0002517) SubClassOf(efo:EFO_1000606 ObjectSomeValuesFrom(efo:EFO_0000784 ObjectUnionOf(obo:UBERON_0001264 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264)))) @@ -246380,6 +246384,7 @@ SubClassOf(efo:EFO_1000606 ObjectSomeValuesFrom(efo:EFO_0000784 ObjectUnionOf(ob AnnotationAssertion(obo:IAO_0000115 efo:EFO_1000607 "A rare variant of undifferentiated pancreatic carcinoma characterized by the presence of non-neoplastic osteoclast-like giant cells.") AnnotationAssertion(oboInOwl:hasDbXref efo:EFO_1000607 "NCIt:C5723") AnnotationAssertion(rdfs:label efo:EFO_1000607 "Undifferentiated Pancreatic Carcinoma with Osteoclast-Like Giant Cells") +SubClassOf(efo:EFO_1000607 obo:MONDO_0005184) SubClassOf(efo:EFO_1000607 efo:EFO_0002517) SubClassOf(efo:EFO_1000607 ObjectSomeValuesFrom(efo:EFO_0000784 ObjectUnionOf(obo:UBERON_0001264 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0001264))))