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Makefile
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SHELL := /bin/bash
LEGA_UID := $(shell id -u lega)
LEGA_GID := $(shell id -g lega)
# LEGA_UID := $(shell id -u)
# LEGA_GID := $(shell id -g)
#############################
## Build docker images
#############################
define error-lega-gid-message
Please specify the group id via the LEGA_GID variable.
For example, by calling "make $@ LEGA_UID=$$(id -g lega)"
endef
image-inbox:
ifeq ($(LEGA_GID),)
$(error $(error-lega-gid-message))
endif
make -C ../../src/inbox latest LEGA_GID=$(LEGA_GID)
define error-lega-ugid-message
Please specify the user and group ids via the LEGA_UID/LEGA_GID variable.
For example, by calling "make $@ LEGA_UID=$$(id -u lega) LEGA_GID=$$(id -g lega)"
endef
image-handler:
ifeq ($(LEGA_UID),)
$(error $(error-lega-ugid-message))
endif
ifeq ($(LEGA_GID),)
$(error $(error-lega-ugid-message))
endif
make -C ../../src/handler latest LEGA_UID=$(LEGA_UID) LEGA_GID=$(LEGA_GID)
image-vault:
make -C ../../src/vault latest
images: image-inbox image-handler image-vault
#############################
## Initialize the database
#############################
init-vault:
ifeq ("$(wildcard pg_vault_su_password)","")
$(error 'Please specify the superuser password file "pg_vault_su_password"')
endif
make -C ../../src/vault init DB_DATA=$(shell pwd)/data/vault-db PG_SU_PASSWORD=$(file < pg_vault_su_password)
# Connect to the database from the host machine
export PGHOST=localhost
export PGPORT=5432
export PGUSER=postgres
export PGPASSWORD=$(file < pg_vault_su_password)
export PGDATABASE=ega
psql:
psql
#############################
## Utility targets
#############################
down:
docker-compose down -v
logs:
docker-compose logs -f
ps:
docker-compose ps
clean:
-rm -rf data/{vault,vault.bkp,staging,inbox}/*
-rm -rf data/vault-db
-rm -f data/example.txt.c4gh data/example.txt
#############################
## Distribution
#############################
# we need to sort to return the files in the desired order
SQL_FILES=$(sort $(notdir $(wildcard ../../src/distribution/src/db/*.sql)))
echo:
@echo $(SQL_FILES)
load: $(SQL_FILES:%=load-%)
export PGHOST=localhost
export PGPORT=5432
export PGUSER=postgres
export PGPASSWORD=$(file < pg_vault_su_password)
export PGDATABASE=ega
load-%:
psql < ../../src/distribution/src/db/$*
nss-users:
psql -c 'SELECT * FROM nss.make_users();'
nss-passwords:
psql -c 'SELECT * FROM nss.make_passwords();'
nss-groups:
psql -c 'SELECT * FROM nss.make_groups();'
nss-keys:
psql -c 'SELECT nss.make_authorized_keys(r.db_uid) FROM public.requesters r;'
nss: nss-users nss-passwords nss-groups nss-keys
#############################
## Upload example
#############################
data/example.txt.c4gh: data/example.txt
crypt4gh encrypt --recipient_pk service.key.pub < $< > $@
data/example.txt:
dd if=/dev/urandom bs=1024 count=2 > $@
example: data/example.txt.c4gh
sftp:
sftp -P 2222 john@localhost
permission:
curl http://localhost:8080/permission/jane/EGAD90000000123