Problem When Downloading Files From EGA Using PyEGA3

[caozilongsuper]

When I am trying to download files which has been approved by the DAC, and it shows in my datasets. But I can not download it through the PyEGA3.Following is log showing what the problem is.
pyega3 -cf /share/CZL/pancancer-GWAS/cervix_carcinoma/EGAS00001003199_credential_file.json fetch EGAF00002191775 --output-dir /share/CZL/pancancer-GWAS/cervix_carcinoma/
[2023-11-21 01:16:24 +0800]
[2023-11-21 01:16:24 +0800] pyEGA3 - EGA python client version 5.1.0 (https://github.com/EGA-archive/ega-download-client)
[2023-11-21 01:16:24 +0800] Parts of this software are derived from pyEGA (https://github.com/blachlylab/pyega) by James Blachly
[2023-11-21 01:16:24 +0800] Python version : 3.9.18
[2023-11-21 01:16:24 +0800] OS version : Linux #1 SMP Fri Apr 20 16:44:24 UTC 2018
[2023-11-21 01:16:24 +0800] Server URL: https://ega.ebi.ac.uk:8443/v2
[2023-11-21 01:16:24 +0800] Session-Id: 4029466302
[2023-11-21 01:16:27 +0800]
[2023-11-21 01:16:27 +0800] Authentication success for user '[email protected]'
[2023-11-21 01:16:33 +0800] There was a problem communicating with the EGA repository: 403 Client Error: for url: https://ega.ebi.ac.uk:8443/v2/metadata/files/EGAF00002191775

[chualec]

Hi, I'm also getting a similar error:
There was a problem communicating with the EGA repository: 403 Client Error: for url: https://ega.ebi.ac.uk:8443/v2/metadata/files/EGAF00004726921

has this been solved?

[CsabaHalmagyi]

@caozilongsupper @chualec could you please confirm you tried downloading with the most recent version of the client?

[amnahsiddiqa]

I am also facing the same issue in 2024 with latest version installed pyega. I have submitted ticket to EGAhelp desk as well. the above solution increasing chunk size and connections did not work for me. Neither SFTP is working for me. Any thoughts anybody !

[AlexCork1]

I have similar error as well:
[2024-07-17 09:24:31 +0200] pyEGA3 - EGA python client version 5.2.0 (https://github.com/EGA-archive/ega-download-client)
[2024-07-17 09:24:31 +0200] Parts of this software are derived from pyEGA (https://github.com/blachlylab/pyega) by James Blachly
[2024-07-17 09:24:31 +0200] Python version : 3.10.12
[2024-07-17 09:24:31 +0200] OS version : Linux #1 SMP Thu Jan 11 04:09:03 UTC 2024
[2024-07-17 09:24:31 +0200] Server URL: https://ega.ebi.ac.uk:8443/v2
[2024-07-17 09:24:31 +0200] Session-Id: 3436947463
[2024-07-17 09:24:35 +0200]
[2024-07-17 09:24:35 +0200] Authentication success for user MY_USERNAME
[2024-07-17 09:24:52 +0200] There was a problem communicating with the EGA repository: 404 Client Error: for url: https://ega.ebi.ac.uk:8443/v2/metadata/files/EGAF00007407365

I can download other files in this dataset, just not this one.

Also, on ega-archive.org web page, this file is the only one in this dataset missing:

• "Spanish" flag (has only GB flag) in column "Located in"
• "Quality Reports" icon in last column

[quick2063706271]

Hi, I'm also getting a similar error: There was a problem communicating with the EGA repository: 403 Client Error: for url: https://ega.ebi.ac.uk:8443/v2/metadata/files/EGAF00004726921

has this been solved?

Hi, have you figured out a solution? I am having the same issue.