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Creating Source sample_type for MetaboLights #6

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rabuono opened this issue Feb 4, 2021 · 0 comments
Open

Creating Source sample_type for MetaboLights #6

rabuono opened this issue Feb 4, 2021 · 0 comments

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@rabuono
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rabuono commented Feb 4, 2021

To be able to handle data destined for submission in MetaboLights, creating a new Source Sample Type from the file studySample.xml inside folder MetaboLightsConfig20150707

The zip file can be found at:
ftp://ftp.ebi.ac.uk/pub/databases/metabolights/submissionTool/ISAcreatorMetaboLights.zip

Folder containing studySample.xml at:
ISAcreatorMetaboLights\Configurations\MetaboLightsConfig20150707

Of notice, the studySample.xml to be converted here has four suggested ontologies for the field “Characteristics[Organism part]”. How to include multiple ontologies for one field will be dealt with later, as discussed in #2.

vdkkia pushed a commit that referenced this issue Mar 15, 2021
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