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Can chip-seq-pipeline2 run locally without internet? #306

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cyz0315 opened this issue Jun 26, 2024 · 1 comment
Open

Can chip-seq-pipeline2 run locally without internet? #306

cyz0315 opened this issue Jun 26, 2024 · 1 comment

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@cyz0315
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cyz0315 commented Jun 26, 2024

I tried to run pipeline on cluster without internet connection, with local docker. But this error:
requests.exceptions.ConnectionError: HTTPSConnectionPool(host='github.com', port=443): Max retries exceeded with url: /broadinstitute/cromwell/releases/download/82/womtool-82.jar

I run by:
caper run /data/home/cheyizhuo/opt/encode/chip-seq-pipeline2/chip.wdl -i /data/home/cheyizhuo/MeCP2_HuangChen/mycode/data_process/chip/jsons/chip_MeCP2-IPS.json --singularity encodedcc/chip-seq-pipeline:v2.2.1 -b "local" -m ./chip_MeCP2-IPS.json --max-concurrent-tasks 2 --local-out-dir /data/home/cheyizhuo/opt/encode/chip-seq-pipeline2/local_for_caper/

@hitz
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hitz commented Jul 2, 2024

I think you need an internet connection because the pipeline needs data/code from github.

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