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bw_to_dict is not defined in score.py #5

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ccchang0111 opened this issue Jul 5, 2019 · 1 comment
Open

bw_to_dict is not defined in score.py #5

ccchang0111 opened this issue Jul 5, 2019 · 1 comment

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@ccchang0111
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y_pred_dict = bw_to_dict(bw_pred, args.chrom, args.window_size,

Hi, thanks for writing the script. I am hoping to use the score.py without converting my bigwig files to .npy. But seems like the 'bw_to_dict' function is missing.

Converting bigwig to npy take a long time, that is why I am thinking calculating the score from bigwig directly.

Thanks!

@leepc12
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leepc12 commented Jul 9, 2019

Thanks for reporting. We will fix this in the next release. Until then please add the following to line 20 of score.py and try again.

from build_npy_from_bigwig import bw_to_dict

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