Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

API use cases #28

Open
jamesamcl opened this issue Jan 30, 2025 · 1 comment
Open

API use cases #28

jamesamcl opened this issue Jan 30, 2025 · 1 comment

Comments

@jamesamcl
Copy link
Contributor

  • What are all the taxons ("Taxonomic ID", "Taxon Name","Rank","Parent Taxonomic ID" …) for the latest release or of a specific eg: "release version" 2022 ?
  • What are all the distinct taxon names to use across all history for the taxon named “Human respiratory virus” … should return the information about taxons displayed on the ICTV taxonomy history (Taxon name release 1971 that have been split in several terms across history it remains 2 of them in the last release: Betacoronavirus1 and Human coronavirus 229E … the current term that should be used without human intervention should be the Subfamily: Orthocoronavirinae?)
  • What are all the distinct taxon names and their parents taxon across all lineages and all history
  • what is the Taxon Name for the Taxonomic ID n°xxx(whatever the release) in the "release version" 2021 ?
  • what is the lineage of the Taxonomic ID n°xxx for the "release version" 2022 ? (the list of taxon nodes and their details)
  • what are all the taxons ("Taxonomic ID", "Taxon Name") having a "Rank" = Species for the "release version" 2022 ?
  • what is the list of taxons (Taxonomic ID, Taxonomic ID to use for Promoted/merged/abolished cases) that will be resolved by a different Taxonomic ID in the "release version 2022" ?

CC @henrietteharmse

@jamesamcl
Copy link
Contributor Author

Most of these require querying by specific annotation properties which should be possible in the v2 OLS API which we are in the process of documenting, EBISPOT/ols4#837

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant