diff --git a/examples/dev_sandbox/prof_nsm.py b/examples/dev_sandbox/prof_nsm.py
new file mode 100644
index 0000000..68a85db
--- /dev/null
+++ b/examples/dev_sandbox/prof_nsm.py
@@ -0,0 +1,217 @@
+"""A script to allow for debugging of the NSM module."""
+import time
+import sys
+import clearwater_modules as cwm
+from clearwater_modules.nsm1.model import NutrientBudget
+
+
+
+
+initial_state_values = {
+ 'Ap': 1,
+ 'Ab': 1,
+ 'NH4': 1,
+ 'NO3': 1,
+ 'OrgN': 1,
+ 'N2': 1,
+ 'TIP': 1,
+ 'OrgP': 1,
+ 'POC': 1,
+ 'DOC': 1,
+ 'DIC': 1,
+ 'POM': 1,
+ 'CBOD': 1,
+ 'DOX': 1,
+ 'PX': 1,
+ 'Alk': 1
+}
+
+algae_parameters = {
+ 'AWd': 100,
+ 'AWc': 40,
+ 'AWn': 7.2,
+ 'AWp': 1,
+ 'AWa': 1000,
+ 'KL': 10,
+ 'KsN': 0.04,
+ 'KsP': 0.0012,
+ 'mu_max_20': 1,
+ 'kdp_20': 0.15,
+ 'krp_20': 0.2,
+ 'vsap': 0.15,
+ 'growth_rate_option': 1,
+ 'light_limitation_option': 1,
+ 'lambda0': .5,
+ 'lambda1': .5,
+ 'lambda2': .5,
+ 'lambdas': .5,
+ 'lambdam': .5,
+ 'Fr_PAR': .5
+}
+
+balgae_parameters = {
+ 'BWd': 100,
+ 'BWc': 40,
+ 'BWn': 7.2,
+ 'BWp': 1,
+ 'BWa': 3500,
+
+ 'KLb': 10,
+ 'KsNb': 0.25,
+ 'KsPb': 0.125,
+ 'Ksb': 10,
+ 'mub_max_20': 0.4,
+ 'krb_20': 0.2,
+ 'kdb_20': 0.3,
+ 'b_growth_rate_option': 1,
+ 'b_light_limitation_option': 1,
+ 'Fw': 0.9,
+ 'Fb': 0.9
+}
+
+nitrogen_parameters = {
+ 'KNR': 0.6,
+ 'knit_20': 0.1,
+ 'kon_20': 0.1,
+ 'kdnit_20': 0.002,
+ 'rnh4_20': 0,
+ 'vno3_20': 0,
+ 'KsOxdn': 0.1,
+ 'PN': 0.5,
+ 'PNb': 0.5
+}
+
+phosphorus_parameters = {
+ 'kop_20': 0.1,
+ 'rpo4_20': 0
+}
+
+POM_parameters = {
+ 'kpom_20': 0.1
+}
+
+CBOD_parameters = {
+ 'KsOxbod': 0.5,
+ 'kbod_20': 0.12,
+ 'ksbod_20': 0
+}
+
+carbon_parameters = {
+ 'f_pocp': 0.9,
+ 'kdoc_20': 0.01,
+ 'f_pocb': 0.9,
+ 'kpoc_20': 0.005,
+ 'K_sOxmc': 1,
+ 'pCO2': 383,
+ 'FCO2': 0.2
+}
+
+pathogen_parameters = {
+ 'kdx': 0.8,
+ 'apx': 1,
+ 'vx': 1
+}
+
+alkalinity_parameters = {
+ 'r_alkaa': 1,
+ 'r_alkan': 1,
+ 'r_alkn': 1,
+ 'r_alkden': 1,
+ 'r_alkba': 1,
+ 'r_alkbn': 1
+}
+
+global_parameters = {
+ 'use_NH4': True,
+ 'use_NO3': True,
+ 'use_OrgN': True,
+ 'use_TIP': True,
+ 'use_SedFlux': False,
+ 'use_DOX': True,
+ 'use_Algae': True,
+ 'use_Balgae': True,
+ 'use_OrgP': True,
+ 'use_POC': True,
+ 'use_DOC': True,
+ 'use_DIC': True,
+ 'use_N2': True,
+ 'use_Pathogen': True,
+ 'use_Alk': True,
+ 'use_POM': True
+}
+
+
+global_vars = {
+ 'vson': 0.01,
+ 'vsoc': 0.01,
+ 'vsop': 999,
+ 'vs': 999,
+ 'SOD_20': 999,
+ 'SOD_theta': 999,
+ 'vb': 0.01,
+ 'fcom': 0.4,
+ 'kaw_20_user': 999,
+ 'kah_20_user': 999,
+ 'hydraulic_reaeration_option': 2,
+ 'wind_reaeration_option': 2,
+ 'timestep': 86400,
+ 'depth': 1,
+ 'TwaterC': 20,
+ 'theta': 1.047,
+ 'velocity': 1,
+ 'flow': 2,
+ 'topwidth': 1,
+ 'slope': 2,
+ 'shear_velocity': 4,
+ 'pressure_atm': 2,
+ 'wind_speed': 4,
+ 'q_solar': 4,
+ 'Solid': 1,
+}
+
+DOX_parameters = {
+ 'DOX': 6.5,
+}
+N2_parameters = {}
+
+def main(iters: int):
+ ti = time.time()
+ # define starting state values
+ nsm_model = NutrientBudget(
+ initial_state_values=initial_state_values, # mandatory
+ algae_parameters=algae_parameters,
+ alkalinity_parameters=alkalinity_parameters,
+ balgae_parameters=balgae_parameters,
+ carbon_parameters=carbon_parameters,
+ CBOD_parameters=CBOD_parameters,
+ DOX_parameters=DOX_parameters,
+ nitrogen_parameters=nitrogen_parameters,
+ POM_parameters=POM_parameters,
+ N2_parameters=N2_parameters,
+ phosphorus_parameters=phosphorus_parameters,
+ pathogen_parameters=pathogen_parameters,
+ global_parameters=global_parameters,
+ global_vars=global_vars,
+ track_dynamic_variables=True, # default is true
+ hotstart_dataset=None, # default is None
+ time_dim='year', # default is "timestep"
+ )
+ # print(nsm_model.get_variable_names())
+ print(nsm_model.dynamic_variables_names)
+
+ for _ in range(iters):
+ nsm_model.increment_timestep()
+
+
+if __name__ == '__main__':
+ if len(sys.argv) > 1:
+ try:
+ iters = int(sys.argv[1])
+ print(f'Running {iters} iterations.')
+ except ValueError:
+ raise ValueError('Argument must be an integer # of iterations.')
+ else:
+ print('No argument given, defaulting to 100 iteration.')
+ iters = 100
+
+ main(iters=iters)
diff --git a/examples/model_architecture.ipynb b/examples/model_architecture.ipynb
index 98e4002..4a9f8bd 100644
--- a/examples/model_architecture.ipynb
+++ b/examples/model_architecture.ipynb
@@ -170,52 +170,12 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 2,
"id": "a5d34d2d-03a6-41e1-92fc-9e6fba72d6f5",
"metadata": {
"tags": []
},
"outputs": [
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@@ -591,98 +551,98 @@
" fill: currentColor;\n",
"}\n",
"<xarray.Dataset>\n",
- "Dimensions: (year: 2, x: 1, y: 1)\n",
+ "Dimensions: (tsm_time_step: 2, x: 1, y: 1)\n",
"Coordinates:\n",
- " * year (year) int32 0 1\n",
+ " * tsm_time_step (tsm_time_step) int32 0 1\n",
" * x (x) float64 1.0\n",
" * y (y) float64 1.0\n",
"Data variables: (12/52)\n",
- " water_temp_c (year, x, y) float64 20.0 20.0\n",
- " surface_area (year, x, y) int32 1 1\n",
- " volume (year, x, y) int32 1 1\n",
+ " water_temp_c (tsm_time_step, x, y) float64 20.0 20.0\n",
+ " surface_area (tsm_time_step, x, y) float64 1.0 1.0\n",
+ " volume (tsm_time_step, x, y) float64 1.0 1.0\n",
" use_sed_temp (x, y) bool True\n",
" stefan_boltzmann (x, y) float64 5.67e-08\n",
" cp_air (x, y) int32 1005\n",
" ... ...\n",
- " q_sediment (year, x, y) float64 nan -401.5\n",
- " dTdt_sediment_c (year, x, y) float64 nan 129.6\n",
- " q_longwave_down (year, x, y) float64 nan 337.8\n",
- " q_longwave_up (year, x, y) float64 nan 406.2\n",
- " q_net (year, x, y) float64 nan -151.1\n",
- " dTdt_water_c (year, x, y) float64 nan -3.619e-05water_temp_c
(year, x, y)
float64
20.0 20.0
- long_name :
- Water temperature
- units :
- degC
- description :
- TSM state variable for water temperature
array([[[20. ]],\n",
+ " q_sediment (tsm_time_step, x, y) float64 nan -401.5\n",
+ " dTdt_sediment_c (tsm_time_step, x, y) float64 nan 129.6\n",
+ " q_net (tsm_time_step, x, y) float64 nan -151.1\n",
+ " q_longwave_down (tsm_time_step, x, y) float64 nan 337.8\n",
+ " q_longwave_up (tsm_time_step, x, y) float64 nan 406.2\n",
+ " dTdt_water_c (tsm_time_step, x, y) float64 nan -3.619e-05
water_temp_c
(tsm_time_step, x, y)
float64
20.0 20.0
- long_name :
- Water temperature
- units :
- degC
- description :
- TSM state variable for water temperature
array([[[20. ]],\n",
"\n",
- " [[19.99996381]]])surface_area
(year, x, y)
int32
1 1
- long_name :
- Surface area
- units :
- m^2
- description :
- Surface area
array([[[1]],\n",
+ " [[19.99996381]]])
surface_area
(tsm_time_step, x, y)
float64
1.0 1.0
- long_name :
- Surface area
- units :
- m^2
- description :
- Surface area
array([[[1.]],\n",
"\n",
- " [[1]]])volume
(year, x, y)
int32
1 1
- long_name :
- Volume
- units :
- m^3
- description :
- Volume
array([[[1]],\n",
+ " [[1.]]])
volume
(tsm_time_step, x, y)
float64
1.0 1.0
- long_name :
- Volume
- units :
- m^3
- description :
- Volume
array([[[1.]],\n",
"\n",
- " [[1]]])use_sed_temp
(x, y)
bool
True
- long_name :
- Use Sediment Temperature?
- units :
- boolean
- description :
- Controls whether to use/calculate sediment temperature or not.
stefan_boltzmann
(x, y)
float64
5.67e-08
- long_name :
- Stefan-Boltzmann Constant
- units :
- W m-2 K-4
- description :
- The Stefan-Boltzmann constant.
cp_air
(x, y)
int32
1005
- long_name :
- Specific Heat Capacity of Air
- units :
- J kg-1 K-1
- description :
- The specific heat capacity of air.
emissivity_water
(x, y)
float64
0.97
- long_name :
- Emissivity of Water
- units :
- 1
- description :
- The emissivity of water.
gravity
(x, y)
float64
9.806
- long_name :
- Gravity
- units :
- m s-2
- description :
- The acceleration due to gravity.
a0
(x, y)
float64
6.985e+03
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a1
(x, y)
float64
-188.9
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a2
(x, y)
float64
2.133
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a3
(x, y)
float64
-0.01289
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a4
(x, y)
float64
4.394e-05
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a5
(x, y)
float64
-8.024e-08
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a6
(x, y)
float64
6.137e-11
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
pb
(x, y)
int32
1600
- long_name :
- Bulk Density of Sediment
- units :
- kg m-3
- description :
- The bulk density of sediment.
cps
(x, y)
int32
1673
- long_name :
- CPS
- units :
- J kg-1 K-1
- description :
- The CPS.
h2
(x, y)
float64
0.1
- long_name :
- H2
- units :
- m
- description :
- The H2.
alphas
(x, y)
float64
0.0432
- long_name :
- Alphas
- units :
- m-1
- description :
- The alphas.
richardson_option
(x, y)
bool
True
- long_name :
- Richardson Option
- units :
- unitless
- description :
- The Richardson option.
air_temp_c
(x, y)
int32
20
- long_name :
- Air Temperature
- units :
- C
- description :
- The air temperature.
q_solar
(x, y)
int32
400
- long_name :
- Solar Heat Flux
- units :
- W m-2
- description :
- The solar heat flux.
sed_temp_c
(x, y)
int32
5
- long_name :
- Sediment Temperature
- units :
- C
- description :
- The sediment temperature.
eair_mb
(x, y)
int32
1
- long_name :
- Eair MB
- units :
- mb
- description :
- The eair MB.
pressure_mb
(x, y)
int32
1013
- long_name :
- Pressure
- units :
- mb
- description :
- The pressure.
cloudiness
(x, y)
float64
0.1
- long_name :
- Cloudiness
- units :
- unitless
- description :
- The cloudiness.
wind_speed
(x, y)
int32
3
- long_name :
- Wind Speed
- units :
- m s-1
- description :
- The wind speed.
wind_a
(x, y)
float64
0.3
- long_name :
- Wind A
- units :
- m s-1
- description :
- The wind A.
wind_b
(x, y)
float64
1.5
- long_name :
- Wind B
- units :
- m s-1
- description :
- The wind B.
wind_c
(x, y)
int32
1
- long_name :
- Wind C
- units :
- m s-1
- description :
- The wind C.
wind_kh_kw
(x, y)
int32
1
- long_name :
- Wind KH KW
- units :
- m s-1
- description :
- The wind KH KW.
air_temp_k
(year, x, y)
float64
nan 293.2
- long_name :
- Air temperature
- units :
- K
- description :
- Air temperature
array([[[ nan]],\n",
+ " [[1.]]])
use_sed_temp
(x, y)
bool
True
- long_name :
- Use Sediment Temperature?
- units :
- boolean
- description :
- Controls whether to use/calculate sediment temperature or not.
stefan_boltzmann
(x, y)
float64
5.67e-08
- long_name :
- Stefan-Boltzmann Constant
- units :
- W m-2 K-4
- description :
- The Stefan-Boltzmann constant.
cp_air
(x, y)
int32
1005
- long_name :
- Specific Heat Capacity of Air
- units :
- J kg-1 K-1
- description :
- The specific heat capacity of air.
emissivity_water
(x, y)
float64
0.97
- long_name :
- Emissivity of Water
- units :
- 1
- description :
- The emissivity of water.
gravity
(x, y)
float64
9.806
- long_name :
- Gravity
- units :
- m s-2
- description :
- The acceleration due to gravity.
a0
(x, y)
float64
6.985e+03
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a1
(x, y)
float64
-188.9
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a2
(x, y)
float64
2.133
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a3
(x, y)
float64
-0.01289
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a4
(x, y)
float64
4.394e-05
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a5
(x, y)
float64
-8.024e-08
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
a6
(x, y)
float64
6.137e-11
- long_name :
- Albedo of Water
- units :
- unitless
- description :
- The albedo of water.
pb
(x, y)
int32
1600
- long_name :
- Bulk Density of Sediment
- units :
- kg m-3
- description :
- The bulk density of sediment.
cps
(x, y)
int32
1673
- long_name :
- CPS
- units :
- J kg-1 K-1
- description :
- The CPS.
h2
(x, y)
float64
0.1
- long_name :
- H2
- units :
- m
- description :
- The H2.
alphas
(x, y)
float64
0.0432
- long_name :
- Alphas
- units :
- m-1
- description :
- The alphas.
richardson_option
(x, y)
bool
True
- long_name :
- Richardson Option
- units :
- unitless
- description :
- The Richardson option.
air_temp_c
(x, y)
int32
20
- long_name :
- Air Temperature
- units :
- C
- description :
- The air temperature.
q_solar
(x, y)
int32
400
- long_name :
- Solar Heat Flux
- units :
- W m-2
- description :
- The solar heat flux.
sed_temp_c
(x, y)
int32
5
- long_name :
- Sediment Temperature
- units :
- C
- description :
- The sediment temperature.
eair_mb
(x, y)
int32
1
- long_name :
- Eair MB
- units :
- mb
- description :
- The eair MB.
pressure_mb
(x, y)
int32
1013
- long_name :
- Pressure
- units :
- mb
- description :
- The pressure.
cloudiness
(x, y)
float64
0.1
- long_name :
- Cloudiness
- units :
- unitless
- description :
- The cloudiness.
wind_speed
(x, y)
int32
3
- long_name :
- Wind Speed
- units :
- m s-1
- description :
- The wind speed.
wind_a
(x, y)
float64
0.3
- long_name :
- Wind A
- units :
- m s-1
- description :
- The wind A.
wind_b
(x, y)
float64
1.5
- long_name :
- Wind B
- units :
- m s-1
- description :
- The wind B.
wind_c
(x, y)
int32
1
- long_name :
- Wind C
- units :
- m s-1
- description :
- The wind C.
wind_kh_kw
(x, y)
int32
1
- long_name :
- Wind KH KW
- units :
- m s-1
- description :
- The wind KH KW.
air_temp_k
(tsm_time_step, x, y)
float64
nan 293.2
- long_name :
- Air temperature
- units :
- K
- description :
- Air temperature
array([[[ nan]],\n",
"\n",
- " [[293.16]]])water_temp_k
(year, x, y)
float64
nan 293.2
- long_name :
- Water temperature
- units :
- K
- description :
- Water temperature
array([[[ nan]],\n",
+ " [[293.16]]])
water_temp_k
(tsm_time_step, x, y)
float64
nan 293.2
- long_name :
- Water temperature
- units :
- K
- description :
- Water temperature
array([[[ nan]],\n",
"\n",
- " [[293.16]]])mixing_ratio_air
(year, x, y)
float64
nan 0.0006146
- long_name :
- Mixing ratio of air
- units :
- unitless
- description :
- Mixing ratio of air
array([[[ nan]],\n",
+ " [[293.16]]])
mixing_ratio_air
(tsm_time_step, x, y)
float64
nan 0.0006146
- long_name :
- Mixing ratio of air
- units :
- unitless
- description :
- Mixing ratio of air
array([[[ nan]],\n",
"\n",
- " [[0.00061462]]])density_air
(year, x, y)
float64
nan 1.202
- long_name :
- Density of air
- units :
- kg/m^3
- description :
- Density of air
array([[[ nan]],\n",
+ " [[0.00061462]]])
density_air
(tsm_time_step, x, y)
float64
nan 1.202
- long_name :
- Density of air
- units :
- kg/m^3
- description :
- Density of air
array([[[ nan]],\n",
"\n",
- " [[1.20204653]]])density_water
(year, x, y)
float64
nan 998.2
- long_name :
- Density of water
- units :
- kg/m^3
- description :
- Density of water
array([[[ nan]],\n",
+ " [[1.20204653]]])
density_water
(tsm_time_step, x, y)
float64
nan 998.2
- long_name :
- Density of water
- units :
- kg/m^3
- description :
- Density of water
array([[[ nan]],\n",
"\n",
- " [[998.20668383]]])esat_mb
(year, x, y)
float64
nan 23.63
- long_name :
- Saturation vapor pressure
- units :
- mb
- description :
- Saturation vapor pressure
array([[[ nan]],\n",
+ " [[998.20668383]]])
esat_mb
(tsm_time_step, x, y)
float64
nan 23.63
- long_name :
- Saturation vapor pressure
- units :
- mb
- description :
- Saturation vapor pressure
array([[[ nan]],\n",
"\n",
- " [[23.62941518]]])density_air_sat
(year, x, y)
float64
nan 1.192
- long_name :
- Density of air at saturation
- units :
- kg/m^3
- description :
- Density of air at saturation
array([[[ nan]],\n",
+ " [[23.62941518]]])
density_air_sat
(tsm_time_step, x, y)
float64
nan 1.192
- long_name :
- Density of air at saturation
- units :
- kg/m^3
- description :
- Density of air at saturation
array([[[ nan]],\n",
"\n",
- " [[1.19185468]]])ri_number
(year, x, y)
float64
nan 0.01848
- long_name :
- Richardson number
- units :
- unitless
- description :
- Richardson number
array([[[ nan]],\n",
+ " [[1.19185468]]])
ri_number
(tsm_time_step, x, y)
float64
nan 0.01848
- long_name :
- Richardson number
- units :
- unitless
- description :
- Richardson number
array([[[ nan]],\n",
"\n",
- " [[0.01847614]]])ri_function
(year, x, y)
float64
nan 0.6771
- long_name :
- Richardson function
- units :
- unitless
- description :
- Richardson function
array([[[ nan]],\n",
+ " [[0.01847614]]])
ri_function
(tsm_time_step, x, y)
float64
nan 0.6771
- long_name :
- Richardson function
- units :
- unitless
- description :
- Richardson function
array([[[ nan]],\n",
"\n",
- " [[0.67707413]]])lv
(year, x, y)
float64
nan 1.801e+06
- long_name :
- Latent heat of vaporization
- units :
- J/kg
- description :
- Latent heat of vaporization
array([[[ nan]],\n",
+ " [[0.67707413]]])
lv
(tsm_time_step, x, y)
float64
nan 1.801e+06
- long_name :
- Latent heat of vaporization
- units :
- J/kg
- description :
- Latent heat of vaporization
array([[[ nan]],\n",
"\n",
- " [[1800595.4616]]])cp_water
(year, x, y)
float64
nan 4.182e+03
- long_name :
- Specific heat of water
- units :
- J/kg/K
- description :
- Specific heat of water
array([[[ nan]],\n",
+ " [[1800595.4616]]])
cp_water
(tsm_time_step, x, y)
float64
nan 4.182e+03
- long_name :
- Specific heat of water
- units :
- J/kg/K
- description :
- Specific heat of water
array([[[ nan]],\n",
"\n",
- " [[4182.]]])emissivity_air
(year, x, y)
float64
nan 0.8053
- long_name :
- Emissivity of air
- units :
- unitless
- description :
- Emissivity of air
array([[[ nan]],\n",
+ " [[4182.]]])
emissivity_air
(tsm_time_step, x, y)
float64
nan 0.8053
- long_name :
- Emissivity of air
- units :
- unitless
- description :
- Emissivity of air
array([[[ nan]],\n",
"\n",
- " [[0.8052839]]])wind_function
(year, x, y)
float64
nan 3.25e-06
- long_name :
- Wind function
- units :
- unitless
- description :
- Wind function
array([[[ nan]],\n",
+ " [[0.8052839]]])
wind_function
(tsm_time_step, x, y)
float64
nan 3.25e-06
- long_name :
- Wind function
- units :
- unitless
- description :
- Wind function
array([[[ nan]],\n",
"\n",
- " [[3.2499558e-06]]])q_latent
(year, x, y)
float64
nan 81.16
- long_name :
- Latent heat flux
- units :
- W/m^2
- description :
- Latent heat flux
array([[[ nan]],\n",
+ " [[3.2499558e-06]]])
q_latent
(tsm_time_step, x, y)
float64
nan 81.16
- long_name :
- Latent heat flux
- units :
- W/m^2
- description :
- Latent heat flux
array([[[ nan]],\n",
"\n",
- " [[81.1649171]]])q_sensible
(year, x, y)
float64
nan 0.0
- long_name :
- Sensible heat flux
- units :
- W/m^2
- description :
- Sensible heat flux
array([[[nan]],\n",
+ " [[81.1649171]]])
q_sensible
(tsm_time_step, x, y)
float64
nan 0.0
- long_name :
- Sensible heat flux
- units :
- W/m^2
- description :
- Sensible heat flux
array([[[nan]],\n",
"\n",
- " [[ 0.]]])q_sediment
(year, x, y)
float64
nan -401.5
- long_name :
- Sediment heat flux
- units :
- W/m^2
- description :
- Sediment heat flux
array([[[ nan]],\n",
+ " [[ 0.]]])
q_sediment
(tsm_time_step, x, y)
float64
nan -401.5
- long_name :
- Sediment heat flux
- units :
- W/m^2
- description :
- Sediment heat flux
array([[[ nan]],\n",
"\n",
- " [[-401.52]]])dTdt_sediment_c
(year, x, y)
float64
nan 129.6
- long_name :
- Sediment temperature change
- units :
- degC
- description :
- Sediment temperature change
array([[[ nan]],\n",
+ " [[-401.52]]])
dTdt_sediment_c
(tsm_time_step, x, y)
float64
nan 129.6
- long_name :
- Sediment temperature change
- units :
- degC
- description :
- Sediment temperature change
array([[[ nan]],\n",
"\n",
- " [[129.6]]])q_longwave_down
(year, x, y)
float64
nan 337.8
- long_name :
- Downwelling longwave radiation
- units :
- W/m2
- description :
- Downwelling longwave radiation
array([[[ nan]],\n",
+ " [[129.6]]])
q_net
(tsm_time_step, x, y)
float64
nan -151.1
- long_name :
- Net heat flux
- units :
- W/m^2
- description :
- Net heat flux
array([[[ nan]],\n",
"\n",
- " [[337.82252346]]])q_longwave_up
(year, x, y)
float64
nan 406.2
- long_name :
- Upwelling longwave radiation
- units :
- W/m2
- description :
- Upwelling longwave radiation
array([[[ nan]],\n",
+ " [[-151.09393929]]])
q_longwave_down
(tsm_time_step, x, y)
float64
nan 337.8
- long_name :
- Downwelling longwave radiation
- units :
- W/m2
- description :
- Downwelling longwave radiation
array([[[ nan]],\n",
"\n",
- " [[406.23154566]]])q_net
(year, x, y)
float64
nan -151.1
- long_name :
- Net heat flux
- units :
- W/m^2
- description :
- Net heat flux
array([[[ nan]],\n",
+ " [[337.82252346]]])
q_longwave_up
(tsm_time_step, x, y)
float64
nan 406.2
- long_name :
- Upwelling longwave radiation
- units :
- W/m2
- description :
- Upwelling longwave radiation
array([[[ nan]],\n",
"\n",
- " [[-151.09393929]]])dTdt_water_c
(year, x, y)
float64
nan -3.619e-05
- long_name :
- Water temperature change
- units :
- degC
- description :
- Water temperature change
array([[[ nan]],\n",
+ " [[406.23154566]]])
dTdt_water_c
(tsm_time_step, x, y)
float64
nan -3.619e-05
- long_name :
- Water temperature change
- units :
- degC
- description :
- Water temperature change
array([[[ nan]],\n",
"\n",
- " [[-3.61944967e-05]]])
<xarray.Dataset>\n",
- "Dimensions: (year: 1, x: 1, y: 1)\n",
- "Coordinates:\n",
- " * year (year) int32 0\n",
- " * x (x) float64 1.0\n",
- " * y (y) float64 1.0\n",
- "Data variables:\n",
- " *empty*
"
- ],
- "text/plain": [
- "\n",
- "Dimensions: (year: 1, x: 1, y: 1)\n",
+ "<xarray.Dataset> Size: 3kB\n",
+ "Dimensions: (year: 2, x: 1, y: 1)\n",
"Coordinates:\n",
- " * year (year) int32 0\n",
- " * x (x) float64 1.0\n",
- " * y (y) float64 1.0\n",
- "Data variables:\n",
- " *empty*"
+ " * year (year) int32 8B 0 1\n",
+ " * x (x) float64 8B 1.0\n",
+ " * y (y) float64 8B 1.0\n",
+ "Data variables: (12/281)\n",
+ " Ap (year, x, y) float64 16B 1.0 -3.05e+04\n",
+ " Ab (year, x, y) float64 16B 1.0 -3.967e+04\n",
+ " NH4 (year, x, y) float64 16B 1.0 5.951e+03\n",
+ " NO3 (year, x, y) float64 16B 1.0 3.724e+03\n",
+ " OrgN (year, x, y) float64 16B 1.0 -7.898e+03\n",
+ " N2 (year, x, y) float64 16B 1.0 2.191e+07\n",
+ " ... ...\n",
+ " dAlkdt (year, x, y) float64 16B nan 0.3351\n",
+ " KHN2_tc (year, x, y) float64 16B nan 0.0007001\n",
+ " P_wv (year, x, y) float64 16B nan 0.02309\n",
+ " N2sat (year, x, y) float64 16B nan 30.61\n",
+ " dN2dt (year, x, y) float64 16B nan 253.6\n",
+ " TDG (year, x, y) float64 16B nan infAp
(year, x, y)
float64
1.0 -3.05e+04
- long_name :
- Algae Concentration
- units :
- ug-Chla/L
- description :
- Algal Concentration
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-3.05018421e+04]]])
Ab
(year, x, y)
float64
1.0 -3.967e+04
- long_name :
- Benthic Algae Concentration
- units :
- g-D/m^2
- description :
- Benthic Algae Concentration
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-3.96704364e+04]]])
NH4
(year, x, y)
float64
1.0 5.951e+03
- long_name :
- Ammonium Concentration
- units :
- mg-N/L
- description :
- Ammonium Concentration
array([[[1.00000000e+00]],\n",
+ "\n",
+ " [[5.95127331e+03]]])
NO3
(year, x, y)
float64
1.0 3.724e+03
- long_name :
- Nitrate Concentration
- units :
- mg-N/L
- description :
- Nitrate Concentration
array([[[1.00000000e+00]],\n",
+ "\n",
+ " [[3.72352315e+03]]])
OrgN
(year, x, y)
float64
1.0 -7.898e+03
- long_name :
- Organic Nitrogen Concentration
- units :
- mg-N/L
- description :
- Organic Nitrogen Concentration
array([[[ 1.0000000e+00]],\n",
+ "\n",
+ " [[-7.8980336e+03]]])
N2
(year, x, y)
float64
1.0 2.191e+07
- long_name :
- Nitrogen concentration air
- units :
- mg-N/L
- description :
- Nitrogen concentration air
array([[[1.00000000e+00]],\n",
+ "\n",
+ " [[2.19067976e+07]]])
TIP
(year, x, y)
float64
1.0 8.787e+03
- long_name :
- Total Inorganic Phosphorus
- units :
- mg-P/L
- description :
- Total Inorganic Phosphorus Concentration
array([[[1.00000000e+00]],\n",
+ "\n",
+ " [[8.78662577e+03]]])
OrgP
(year, x, y)
float64
1.0 -8.632e+07
- long_name :
- Total Organic Phosphorus
- units :
- mg-P/L
- description :
- Total Organic Phosphorus Concentration
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-8.63220161e+07]]])
POC
(year, x, y)
float64
1.0 6.73e+03
- long_name :
- Particulate Organic Carbon
- units :
- mg-C/L
- description :
- Particulate Organic Carbon Concentration
array([[[1.000000e+00]],\n",
+ "\n",
+ " [[6.729832e+03]]])
DOC
(year, x, y)
float64
1.0 892.6
- long_name :
- Dissolved Organic Carbon
- units :
- mg-C/L
- description :
- Dissolved Organic Carbon Concentration
array([[[ 1. ]],\n",
+ "\n",
+ " [[892.648]]])
DIC
(year, x, y)
float64
1.0 -1.701e+09
- long_name :
- Dissolved Inorganic Carbon
- units :
- mg-C/L
- description :
- Dissolved Inorganic Carbon Concentration
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-1.70069724e+09]]])
POM
(year, x, y)
float64
1.0 -3.714e+03
- long_name :
- Particulate Organic Matter
- units :
- mg-D/L
- description :
- Particulate Organic Matter Concentration
array([[[ 1.0000e+00]],\n",
+ "\n",
+ " [[-3.7142e+03]]])
CBOD
(year, x, y)
float64
1.0 -6.911e+03
- long_name :
- Carbonaceous Biochemical Oxygen Demand
- units :
- mg-O2/L
- description :
- Carbonaceous Biochemical Oxygen Demand Concentration
array([[[ 1.000e+00]],\n",
+ "\n",
+ " [[-6.911e+03]]])
DOX
(year, x, y)
float64
1.0 -4.391e+07
- long_name :
- Dissolved Oxygen
- units :
- mg-O2/L
- description :
- Dissolved Oxygen
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-4.39110823e+07]]])
PX
(year, x, y)
float64
1.0 -4.802e+05
- long_name :
- Pathogen
- units :
- cfu/100mL
- description :
- Pathogen concentration
array([[[ 1.00000000e+00]],\n",
+ "\n",
+ " [[-4.80184883e+05]]])
Alk
(year, x, y)
float64
1.0 2.895e+04
- long_name :
- Alkalinity
- units :
- mg-CaCO3/L
- description :
- Alkalinity concentration
array([[[1.00000000e+00]],\n",
+ "\n",
+ " [[2.89504416e+04]]])
vson
(x, y)
float64
0.01
- long_name :
- Organic N settling velocity
- units :
- m/d
- description :
- Organic N settling velocity
vsoc
(x, y)
float64
0.01
- long_name :
- POC settling velocity
- units :
- m/d
- description :
- POC settling velocity
vsop
(x, y)
int32
999
- long_name :
- Organic phosphorus settling velocity
- units :
- m/d
- description :
- Organic phosphorus settling velocity
vs
(x, y)
int32
999
- long_name :
- Sediment settling velocity
- units :
- m/d
- description :
- Sediment settling velocity
SOD_20
(x, y)
int32
999
- long_name :
- Sediment oxygen demand at 20 degrees C
- units :
- g-O2/m/d
- description :
- Sediment oxygen demand at 20 degrees C
SOD_theta
(x, y)
int32
999
- long_name :
- Arrhenius coefficient for sediment oxygen demand
- units :
- unitless
- description :
- Arrhenius coefficient for sediment oxygen demand
fcom
(x, y)
float64
0.4
- long_name :
- Fraction of carbon in organic matter
- units :
- mg-C/mg-D
- description :
- Fraction of carbon in organic matter
vb
(x, y)
float64
0.01
- long_name :
- Burial velocity
- units :
- m/d
- description :
- Rate at which constituents are buried on the bottom
kaw_20_user
(x, y)
int32
999
- long_name :
- Wind oxygen reaeration velocity at 20C
- units :
- m/d
- description :
- Wind oxygen reaeration velocity at 20C
kah_20_user
(x, y)
int32
999
- long_name :
- Hydraulic oxygen reaeration rate at 20C
- units :
- 1/d
- description :
- Hydraulic oxygen reaeration rate at 20C
hydraulic_reaeration_option
(x, y)
int32
2
- long_name :
- Option for chosing the method by which O2 reaeration rate is calculated
- units :
- unitless
- description :
- Selects method for computing O2 reaeration rate
wind_reaeration_option
(x, y)
int32
2
- long_name :
- Option for chosing the method by which wind reaeration is calculated
- units :
- unitless
- description :
- Selects method for computing O2 reaeration due to wind
use_NH4
(x, y)
bool
True
- long_name :
- Use ammonium module
- units :
- unitless
- description :
- True/False use ammonium module
use_NO3
(x, y)
bool
True
- long_name :
- Use nitrate module
- units :
- unitless
- description :
- True/False use nitrate module
use_OrgN
(x, y)
bool
True
- long_name :
- Use organic nitrogen module
- units :
- unitless
- description :
- True/False use organic nitrogen module
use_SedFlux
(x, y)
bool
False
- long_name :
- Use sediment flux module
- units :
- unitless
- description :
- True/False use sediment flux module
use_DOX
(x, y)
bool
True
- long_name :
- Use dissolved oxygen module
- units :
- unitless
- description :
- True/False use dissolved oxygen module
use_Algae
(x, y)
bool
True
- long_name :
- Use algae module
- units :
- unitless
- description :
- True/False use algae module
use_Balgae
(x, y)
bool
True
- long_name :
- Use benthic algae module
- units :
- unitless
- description :
- True/False use benthic algae module
use_TIP
(x, y)
bool
True
- long_name :
- Use total inorganic phosphorus module
- units :
- unitless
- description :
- True/False use total inorganic phosphorus module
use_OrgP
(x, y)
bool
True
- long_name :
- Use total organic phosphorus module
- units :
- unitless
- description :
- True/False use total organic phosphorus module
use_POC
(x, y)
bool
True
- long_name :
- Use particulate organic carbon module
- units :
- unitless
- description :
- True/False use particulate organic carbon module
use_DOC
(x, y)
bool
True
- long_name :
- Use dissolved organic carbon module
- units :
- unitless
- description :
- True/False use dissolved organic carbon module
use_DIC
(x, y)
bool
True
- long_name :
- Use dissolved inorganic carbon module
- units :
- unitless
- description :
- True/False use dissolved inorganic carbon module
use_N2
(x, y)
bool
True
- long_name :
- Use dissolved N2 module
- units :
- unitless
- description :
- True/False use N2 module
use_Pathogen
(x, y)
bool
True
- long_name :
- Use pathogen module
- units :
- unitless
- description :
- True/False use pathogen module
use_Alk
(x, y)
bool
True
- long_name :
- Use alkalinity module
- units :
- unitless
- description :
- True/False use alkalinity module
use_POM
(x, y)
bool
True
- long_name :
- Use particulate organic matter module
- units :
- unitless
- description :
- True/False use particulate organic matter module
timestep
(x, y)
int32
86400
- long_name :
- timestep
- units :
- d
- description :
- calculation timestep
depth
(x, y)
int32
1
- long_name :
- Depth of water in cell
- units :
- m
- description :
- Depth of water in cell
TwaterC
(x, y)
int32
20
- long_name :
- Water temperature in celsius
- units :
- degrees C
- description :
- Water temperature in celsius
theta
(x, y)
float64
1.047
- long_name :
- Water temperature theta adjustment factor
- units :
- unitless
- description :
- Water temperature theta adjustment factor
velocity
(x, y)
int32
1
- long_name :
- velocity
- units :
- m/s
- description :
- Average water velocity in cell
flow
(x, y)
int32
2
- long_name :
- flow
- units :
- m3/s
- description :
- Average flow rate in cell
topwidth
(x, y)
int32
1
- long_name :
- topwidth
- units :
- m
- description :
- Average topwidth of cell
slope
(x, y)
int32
2
- long_name :
- slope
- units :
- TODO
- description :
- Average slope of bottom surface
shear_velocity
(x, y)
int32
4
- long_name :
- shear_velocity
- units :
- TODO
- description :
- Average shear velocity on bottom surface
pressure_atm
(x, y)
int32
2
- long_name :
- pressure_atm
- units :
- TODO
- description :
- atmospheric pressure in atm
wind_speed
(x, y)
int32
4
- long_name :
- Wind speed at 10 meters above the water surface
- units :
- m/s
- description :
- Wind speed at 10 meters above the water surface
q_solar
(x, y)
int32
4
- long_name :
- Incident short-wave solar radiation
- units :
- W/m2
- description :
- Incident short-wave solar radiation
Solid
(x, y)
int32
1
- long_name :
- Solid reaeration option
- units :
- Unknown
- description :
- Solid
AWd
(x, y)
int32
100
- long_name :
- Algal Dry Weight
- units :
- mg
- description :
- Algal Dry Weight
AWc
(x, y)
int32
40
- long_name :
- Carbon Weight
- units :
- mg
- description :
- Carbon Weight
AWn
(x, y)
float64
7.2
- long_name :
- Nitrogen Weight
- units :
- mg
- description :
- Nitrogen Weight
AWp
(x, y)
int32
1
- long_name :
- Phosphorus Weight
- units :
- mg
- description :
- Phosphorus Weight
AWa
(x, y)
int32
1000
- long_name :
- Algal Chlorophyll
- units :
- ug Chla
- description :
- Algal Chlorophyll
KL
(x, y)
int32
10
- long_name :
- Light Limiting Constant for Algal Growth
- units :
- W/m^2
- description :
- Light Limiting Constant for Algal Growth
KsN
(x, y)
float64
0.04
- long_name :
- Half-Saturation N Limiting Constant for Algal Growth
- units :
- mg-N/L
- description :
- Half-Saturation N Limiting Constant for Algal Growth
KsP
(x, y)
float64
0.0012
- long_name :
- Half-Saturation P Limiting Constant for Algal Growth
- units :
- mg-P/L
- description :
- Half-Saturation P Limiting Constant for Algal Growth
mu_max_20
(x, y)
int32
1
- long_name :
- Max Algae Growth
- units :
- 1/d
- description :
- Max Algae Growth at 20C
kdp_20
(x, y)
float64
0.15
- long_name :
- Algal Mortality Rate
- units :
- 1/d
- description :
- Algal Mortality Rate at 20C
krp_20
(x, y)
float64
0.2
- long_name :
- Algal Respiration Rate
- units :
- 1/d
- description :
- Algal Respiration Rate at 20C
vsap
(x, y)
float64
0.15
- long_name :
- Algal Setting Velocity
- units :
- m/d
- description :
- Algal Setting Velocity
growth_rate_option
(x, y)
int32
1
- long_name :
- Growth Rate Option
- units :
- 1/d
- description :
- Algal growth rate option 1) multiplicative, 2) Limiting Nutrient, 3) Harmonic Mean Option
light_limitation_option
(x, y)
int32
1
- long_name :
- Light Limitation Option
- units :
- 1/d
- description :
- Algal light limitation 1) half-saturation, 2) Smith model, 3) Steele model
lambda0
(x, y)
float64
0.02
- long_name :
- lambda0
- units :
- 1/m
- description :
- background portion
lambda1
(x, y)
float64
0.0088
- long_name :
- lambda1
- units :
- 1/m/(ug Chla/L)
- description :
- linear self shading
lambda2
(x, y)
float64
0.054
- long_name :
- lambda2
- units :
- unitless
- description :
- nonlinear
lambdas
(x, y)
float64
0.052
- long_name :
- lambdas
- units :
- L/mg/m
- description :
- ISS portion
lambdam
(x, y)
float64
0.0174
- long_name :
- lambdam
- units :
- L/mg/m
- description :
- POM portion
Fr_PAR
(x, y)
float64
0.47
- long_name :
- fraction PAR
- units :
- unitless
- description :
- fraction of solar radiation within the PAR of the spectrum
Fw
(x, y)
float64
0.9
- long_name :
- Fraction of benthic algae mortality into water column
- units :
- unitless
- description :
- Fraction of benthic algae mortality into water column
Fb
(x, y)
float64
0.9
- long_name :
- Fraction of bottom area available for benthic algae
- units :
- unitless
- description :
- Fraction of bottom area available for benthic algae
BWd
(x, y)
int32
100
- long_name :
- Benthic algae dry weight
- units :
- unitless
- description :
- Benthic algae dry weight
BWc
(x, y)
int32
40
- long_name :
- Benthic algae carbon
- units :
- unitless
- description :
- Benthic algae carbon
BWn
(x, y)
float64
7.2
- long_name :
- Benthic algae nitrogen
- units :
- unitless
- description :
- Benthic algae nitrogen
BWp
(x, y)
int32
1
- long_name :
- Benthic algae phosphorus
- units :
- unitless
- description :
- Benthic algae phosphorus
BWa
(x, y)
int32
3500
- long_name :
- Benthic algae Chla
- units :
- unitless
- description :
- Benthic algae Chla
KLb
(x, y)
int32
10
- long_name :
- Light limiting constant for benthic algae growth
- units :
- W/m^2
- description :
- Light limiting constant for benthic algae growth
KsNb
(x, y)
float64
0.25
- long_name :
- Half-Saturation N limiting constant for Benthic algae
- units :
- mg-N/L
- description :
- Half-Saturation N limiting constant for Benthic algae
KsPb
(x, y)
float64
0.125
- long_name :
- Half-Saturation P limiting constant for Benthic algae
- units :
- mg-P/L
- description :
- Half-Saturation P limiting constant for Benthic algae
Ksb
(x, y)
int32
10
- long_name :
- Half-Saturation density constant for benthic algae growth
- units :
- g-D/m^2
- description :
- Half-Saturation density constant for benthic algae growth
mub_max_20
(x, y)
float64
0.4
- long_name :
- Maximum benthic algal growth rate
- units :
- 1/d
- description :
- maximum benthic algal growth rate
krb_20
(x, y)
float64
0.2
- long_name :
- Benthic algal respiration rate
- units :
- 1/d
- description :
- Benthic algal respiration rate
kdb_20
(x, y)
float64
0.3
- long_name :
- Benthic algal mortality rate
- units :
- 1/d
- description :
- Benthic algal mortality rate
b_growth_rate_option
(x, y)
int32
1
- long_name :
- Benthic Algal growth rate options
- units :
- unitless
- description :
- Benthic Algal growth rate with two options: 1) Multiplicative, 2) Limiting Nutritent
b_light_limitation_option
(x, y)
int32
1
- long_name :
- Benthic Algal light limitation rate options
- units :
- unitless
- description :
- Benthic Algal light limitation rate with three options: 1) Half-saturation formulation, 2) Smiths Model, 3) Steeles Model
KNR
(x, y)
float64
0.6
- long_name :
- Oxygen inhabitation factor for nitrification
- units :
- mg-O2/L
- description :
- Oxygen inhabitation factor for nitrification
knit_20
(x, y)
float64
0.1
- long_name :
- Nitrification Rate Ammonia decay at 20C
- units :
- 1/d
- description :
- Nitrification Rate Ammonia NH4 -> NO3 decay at 20C
kon_20
(x, y)
float64
0.1
- long_name :
- Decay Rate of OrgN to NH4 at 20C
- units :
- 1/d
- description :
- Decay Rate of OrgN to NH4 at 20C
kdnit_20
(x, y)
float64
0.002
- long_name :
- Denitrification rate at 20C
- units :
- 1/d
- description :
- Denitrification rate at 20C
rnh4_20
(x, y)
int32
0
- long_name :
- Sediment release rate of NH4 at 20C
- units :
- g-N/m^2/d
- description :
- Sediment release rate of NH4 at 20C
vno3_20
(x, y)
int32
0
- long_name :
- Sediment denitrification velocity at 20C
- units :
- m/d
- description :
- Sediment denitrification velocity at 20C
KsOxdn
(x, y)
float64
0.1
- long_name :
- Half-saturation oxygen inhibition constant for denitrification
- units :
- mg-O2/L
- description :
- Half-saturation oxygen inhibition constant for denitrification
PN
(x, y)
float64
0.5
- long_name :
- NH4 preference factor algae
- units :
- unitless
- description :
- NH4 preference factor algae (1=full NH4, 0=full NO3)
PNb
(x, y)
float64
0.5
- long_name :
- NH4 preference factor benthic algae
- units :
- unitless
- description :
- NH4 preference factor benthic algae (1=full NH4, 0=full NO3)
kop_20
(x, y)
float64
0.1
- long_name :
- Decay rate of organic P to DIP
- units :
- 1/d
- description :
- Decay rate of organic P to DIP
rpo4_20
(x, y)
int32
0
- long_name :
- Benthic sediment release rate of DIP
- units :
- g-P/m^2/d
- description :
- Benthic sediment release rate of DIP
kdpo4
(x, y)
float64
0.0
- long_name :
- solid partitioning coeff. of PO4
- units :
- L/kg
- description :
- solid partitioning coeff. of PO4
kpom_20
(x, y)
float64
0.1
- long_name :
- POM dissolution rate at 20C
- units :
- 1/d
- description :
- POM dissolution rate at 20C
kbod_20
(x, y)
float64
0.12
- long_name :
- CBOD oxidation rate at 20C
- units :
- 1/d
- description :
- CBOD oxidation rate at 20C
ksbod_20
(x, y)
int32
0
- long_name :
- CBOD sedimentation rate at 20C
- units :
- m/d
- description :
- CBOD sedimentation rate at 20C
KsOxbod
(x, y)
float64
0.5
- long_name :
- Half saturation oxygen attenuation constant for CBOD oxidation
- units :
- mg-O2/L
- description :
- Half saturation oxygen attenuation constant for CBOD oxidation
f_pocp
(x, y)
float64
0.9
- long_name :
- Fraction of algal mortality into POC
- units :
- unitless
- description :
- Fraction of dead algae that converts to particulate organic carbon
kdoc_20
(x, y)
float64
0.01
- long_name :
- Dissolved organic carbon oxidation rate
- units :
- 1/d
- description :
- Dissolved organic carbon oxidation rate
f_pocb
(x, y)
float64
0.9
- long_name :
- fraction of benthic algal mortality into POC
- units :
- unitless
- description :
- fraction of benthic algal mortality into POC
kpoc_20
(x, y)
float64
0.005
- long_name :
- POC hydrolysis rate at 20 degrees Celsius
- units :
- 1/d
- description :
- POC hydrolysis rate at 20 degrees Celsius
KsOxmc
(x, y)
float64
1.0
- long_name :
- half saturation oxygen attenuation constant for DOC oxidation rate
- units :
- mg-O2/L
- description :
- half saturation oxygen attenuation constant for DOC oxidation rate
pCO2
(x, y)
int32
383
- long_name :
- partial atmospheric CO2 pressure
- units :
- ppm
- description :
- partial pressure of CO2 in the atmosphere
FCO2
(x, y)
float64
0.2
- long_name :
- CO2 reaeration rate
- units :
- 1/d
- description :
- CO2 reaeration rate
roc
(x, y)
float64
2.667
- long_name :
- O2:C ratio for carbon oxidation
- units :
- mg-O2/mg-C
- description :
- O2:C ratio for carbon oxidation (32/12)
ron
(x, y)
float64
4.571
- long_name :
- O2:N ratio for nitrification
- units :
- mg-O2/mg-N
- description :
- O2:N ratio for nitrification (2*32/14)
KsSOD
(x, y)
int32
1
- long_name :
- half saturation oxygen attenuation constant for SOD
- units :
- mg/L
- description :
- half saturation oxygen attenuation constant for SOD
kdx_20
(x, y)
float64
0.8
- long_name :
- Pathogen death rate at 20C
- units :
- 1/d
- description :
- Pathogen death rate at 20C
apx
(x, y)
int32
1
- long_name :
- Light efficiency factor for pathogen decay
- units :
- unitless
- description :
- Light efficiency factor for pathogen decay
vx
(x, y)
int32
1
- long_name :
- Pathogen net settling velocity
- units :
- unitless
- description :
- Pathogen net settling velocity
r_alkaa
(x, y)
int32
1
- long_name :
- Ratio translating algal growth into Alk if NH4 is the N source
- units :
- eq/ug-Chla
- description :
- Ratio translating algal growth into Alk if NH4 is the N source
r_alkan
(x, y)
int32
1
- long_name :
- Ratio translating algal growth into Alk if NO3 is the N source
- units :
- eq/ug-Chla
- description :
- Ratio translating algal growth into Alk if NO3 is the N source
r_alkn
(x, y)
int32
1
- long_name :
- Ratio translating NH4 nitrification into Alk
- units :
- eq/mg-N
- description :
- Ratio translating NH4 nitrification into Alk
r_alkden
(x, y)
int32
1
- long_name :
- Ratio translating NO3 denitrification into Alk
- units :
- eq/mg-N
- description :
- Ratio translating NO3 denitrification into Alk
r_alkba
(x, y)
int32
1
- long_name :
- Ratio translating benthic algae growth into Alk if NH4 is the N source
- units :
- eq/mg-D
- description :
- Ratio translating benthic algae growth into Alk if NH4 is the N source
r_alkbn
(x, y)
int32
1
- long_name :
- Ratio translating benthic algae growth into Alk if NO3 is the N source
- units :
- eq/mg-D
- description :
- Ratio translating benthic algae growth into Alk if NO3 is the N source
TwaterK
(year, x, y)
float64
nan 293.2
- long_name :
- Water Temperature K
- units :
- K
- description :
- Water temperature degree kelvin
array([[[ nan]],\n",
+ "\n",
+ " [[293.16]]])
SOD_tc
(year, x, y)
float64
nan 499.5
- long_name :
- Sediment Oxygen Demand at water temperature tc
- units :
- mg/L
- description :
- Sediment Oxygen Demand at water temperature tc
array([[[ nan]],\n",
+ "\n",
+ " [[499.5]]])
kah_20
(year, x, y)
float64
nan 3.93
- long_name :
- Hydraulic oxygen reaeration rate adjusted for hydraulics
- units :
- 1/d
- description :
- Hydraulic oxygen reaeration rate adjusted for hydraulic parameters according to XX lit
array([[[ nan]],\n",
+ "\n",
+ " [[3.93]]])
kah_tc
(year, x, y)
float64
nan 3.93
- long_name :
- Hydraulic oxygen reaeration rate adjusted for temperature
- units :
- 1/d
- description :
- Hydraulic oxygen reaeration rate adjusted for temperature
array([[[ nan]],\n",
+ "\n",
+ " [[3.93]]])
kaw_20
(year, x, y)
float64
nan 4.35
- long_name :
- Wind oxygen reaeration velocity adjusted for hydraulics
- units :
- m/d
- description :
- Wind oxygen reaeration velocity adjusted for hydraulic parameters according to XX lit
array([[[ nan]],\n",
+ "\n",
+ " [[4.35037249]]])
kaw_tc
(year, x, y)
float64
nan 4.35
- long_name :
- Wind oxygen reaeration velocity adjusted for temperature
- units :
- m/d
- description :
- Wind oxygen reaeration velocity adjusted for temperature
array([[[ nan]],\n",
+ "\n",
+ " [[4.35037249]]])
ka_tc
(year, x, y)
float64
nan 8.28
- long_name :
- Oxygen reaeration rate
- units :
- 1/d
- description :
- Oxygen reaeration rate
array([[[ nan]],\n",
+ "\n",
+ " [[8.28037249]]])
L
(year, x, y)
float64
nan 0.1263
- long_name :
- Light attenuation coefficient
- units :
- unitless
- description :
- Light attenuation coefficient
array([[[ nan]],\n",
+ "\n",
+ " [[0.1263]]])
PAR
(year, x, y)
float64
nan 1.88
- long_name :
- surface light intensity
- units :
- W/m2
- description :
- surface light intensity
array([[[ nan]],\n",
+ "\n",
+ " [[1.88]]])
fdp
(year, x, y)
float64
nan 1.0
- long_name :
- Fraction phosphorus dissolved
- units :
- Unitless
- description :
- Fraction phosphorus dissolved
array([[[nan]],\n",
+ "\n",
+ " [[ 1.]]])
rna
(year, x, y)
float64
nan 0.0072
- long_name :
- Algal N:Chla Ratio
- units :
- mg-N/ug Chla
- description :
- Algal N:Chla Ratio
array([[[ nan]],\n",
+ "\n",
+ " [[0.0072]]])
rpa
(year, x, y)
float64
nan 0.001
- long_name :
- Algal P:Chla Ratio
- units :
- mg-P/ug Chla
- description :
- Algal P:Chla Ratio
array([[[ nan]],\n",
+ "\n",
+ " [[0.001]]])
rca
(year, x, y)
float64
nan 0.04
- long_name :
- Algal C:Chla Ratio
- units :
- mg-C/ug Chla
- description :
- Algal C:Chla Ratio
array([[[ nan]],\n",
+ "\n",
+ " [[0.04]]])
rda
(year, x, y)
float64
nan 0.1
- long_name :
- Algal D:Chla Ratio
- units :
- mg-D/ug Chla
- description :
- Algal D:Chla Ratio
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
mu_max_tc
(year, x, y)
float64
nan 1.0
- long_name :
- Max Algae Growth with Temperature Correction
- units :
- 1/d
- description :
- Max Algae Growth with Temperature Correction
array([[[nan]],\n",
+ "\n",
+ " [[ 1.]]])
krp_tc
(year, x, y)
float64
nan 0.2
- long_name :
- Algal Respiration Rate with Temperature Correction
- units :
- 1/d
- description :
- Algal Respiration Rate with Temperature Correction
array([[[nan]],\n",
+ "\n",
+ " [[0.2]]])
kdp_tc
(year, x, y)
float64
nan 0.15
- long_name :
- Algal Mortality Rate with Temperature Correction
- units :
- 1/d
- description :
- Algal Mortality Rate with Temperature Correction
array([[[ nan]],\n",
+ "\n",
+ " [[0.15]]])
FL
(year, x, y)
float64
nan 0.1501
- long_name :
- Algal Light Limitation
- units :
- unitless
- description :
- Algal Light Limitation
array([[[ nan]],\n",
+ "\n",
+ " [[0.15007688]]])
FN
(year, x, y)
float64
nan 0.9804
- long_name :
- Algal Nitrogen Limitation
- units :
- unitless
- description :
- Algal Nitrogen Limitation
array([[[ nan]],\n",
+ "\n",
+ " [[0.98039216]]])
FP
(year, x, y)
float64
nan 0.9988
- long_name :
- Algal Phosphorus Limitation
- units :
- unitless
- description :
- Algal Phosphorus Limitation
array([[[ nan]],\n",
+ "\n",
+ " [[0.99880144]]])
mu
(year, x, y)
float64
nan 0.147
- long_name :
- Algal Growth Rate
- units :
- 1/d
- description :
- Algal Growth Rate
array([[[ nan]],\n",
+ "\n",
+ " [[0.14695785]]])
ApGrowth
(year, x, y)
float64
nan 0.147
- long_name :
- Algal Growth
- units :
- ug-Chala/L/d
- description :
- Algal Growth
array([[[ nan]],\n",
+ "\n",
+ " [[0.14695785]]])
ApRespiration
(year, x, y)
float64
nan 0.2
- long_name :
- Algal Respiration
- units :
- ug-Chala/L/d
- description :
- Algal Respiration
array([[[nan]],\n",
+ "\n",
+ " [[0.2]]])
ApDeath
(year, x, y)
float64
nan 0.15
- long_name :
- Algal Death
- units :
- ug-Chala/L/d
- description :
- Algal Death
array([[[ nan]],\n",
+ "\n",
+ " [[0.15]]])
ApSettling
(year, x, y)
float64
nan 0.15
- long_name :
- Algal Settling
- units :
- ug-Chala/L/d
- description :
- Algal Settling
array([[[ nan]],\n",
+ "\n",
+ " [[0.15]]])
dApdt
(year, x, y)
float64
nan -0.353
- long_name :
- Algal Biomass Concentration Change
- units :
- ug-Chala/L/d
- description :
- Algal Biomass Concentration Change
array([[[ nan]],\n",
+ "\n",
+ " [[-0.35304215]]])
mub_max_tc
(year, x, y)
float64
nan 0.4
- long_name :
- Maximum benthic algal growth rate
- units :
- 1/d
- description :
- Maximum benthic algal growth rate with temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.4]]])
krb_tc
(year, x, y)
float64
nan 0.2
- long_name :
- Benthic algae respiration rate
- units :
- 1/d
- description :
- Benthic algae respiration rate with temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.2]]])
kdb_tc
(year, x, y)
float64
nan 0.3
- long_name :
- Benthic algae mortality rate
- units :
- 1/d
- description :
- Benthic algae mortality rate with temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.3]]])
rnb
(year, x, y)
float64
nan 0.072
- long_name :
- Ratio nitrogen to dry weight
- units :
- mg-N/mg-D
- description :
- Ratio benthic algae nitrogen to dry weight
array([[[ nan]],\n",
+ "\n",
+ " [[0.072]]])
rpb
(year, x, y)
float64
nan 0.01
- long_name :
- Ratio benthic algae phosphorus to dry weight
- units :
- mg-P/mg-D
- description :
- Ratio benthic algae phosphorus to dry weight
array([[[ nan]],\n",
+ "\n",
+ " [[0.01]]])
rcb
(year, x, y)
float64
nan 0.4
- long_name :
- Ratio benthic algae carbon to dry weight
- units :
- mg-C/mg-D
- description :
- Ratio benthic algae carbon to dry weight
array([[[nan]],\n",
+ "\n",
+ " [[0.4]]])
rab
(year, x, y)
float64
nan 35.0
- long_name :
- Ratio benthic algae chlorophyll-a to dry weight
- units :
- ug-Chala-a/mg-D
- description :
- Ratio benthic algae chlorophyll-a to dry weight
array([[[nan]],\n",
+ "\n",
+ " [[35.]]])
FLb
(year, x, y)
float64
nan 0.1421
- long_name :
- Benthic algal light limitation factor
- units :
- unitless
- description :
- Benthic algal light limitation factor
array([[[ nan]],\n",
+ "\n",
+ " [[0.14214184]]])
FNb
(year, x, y)
float64
nan 0.8889
- long_name :
- Benthic algal nitrogen limitation factor
- units :
- unitless
- description :
- Benthic algal nitrogen limitation factor
array([[[ nan]],\n",
+ "\n",
+ " [[0.88888889]]])
FPb
(year, x, y)
float64
nan 0.8889
- long_name :
- Benthic algal phosphorous limitation factor
- units :
- unitless
- description :
- Benthic algal phosphorous limitation factor
array([[[ nan]],\n",
+ "\n",
+ " [[0.88888889]]])
FSb
(year, x, y)
float64
nan 0.9091
- long_name :
- Benthic algal density attenuation
- units :
- unitless
- description :
- Benthic algal density attenuation
array([[[ nan]],\n",
+ "\n",
+ " [[0.90909091]]])
mub
(year, x, y)
float64
nan 0.04084
- long_name :
- Benthic algae specific growth rate
- units :
- 1/d
- description :
- Benthic algae specific growth rate
array([[[ nan]],\n",
+ "\n",
+ " [[0.04083986]]])
AbGrowth
(year, x, y)
float64
nan 0.04084
- long_name :
- Benthic algae growth rate
- units :
- g/m^2/d
- description :
- Benthic algae growth rate
array([[[ nan]],\n",
+ "\n",
+ " [[0.04083986]]])
AbRespiration
(year, x, y)
float64
nan 0.2
- long_name :
- Benthic algae respiration rate
- units :
- g/m^2/d
- description :
- Benthic algae respiration rate
array([[[nan]],\n",
+ "\n",
+ " [[0.2]]])
AbDeath
(year, x, y)
float64
nan 0.3
- long_name :
- Benthic algae death rate
- units :
- g/m^2/d
- description :
- Benthic algae death rate
array([[[nan]],\n",
+ "\n",
+ " [[0.3]]])
dAbdt
(year, x, y)
float64
nan -0.4592
- long_name :
- Change in benthic algae concentration
- units :
- g/m^2/d
- description :
- Change in benthic algae concentration
array([[[ nan]],\n",
+ "\n",
+ " [[-0.45916014]]])
Chlb
(year, x, y)
float64
nan 35.0
- long_name :
- Chlorophyll-a concentration
- units :
- mg-Chla/m^2
- description :
- Chlorophyll-a concentration
array([[[nan]],\n",
+ "\n",
+ " [[35.]]])
knit_tc
(year, x, y)
float64
nan 0.1
- long_name :
- Nitrification rate ammonia decay
- units :
- 1/d
- description :
- Nitrification rate ammonia decay temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
rnh4_tc
(year, x, y)
float64
nan 0.0
- long_name :
- Sediment release rate of NH4
- units :
- 1/d
- description :
- Sediment release rate of NH4 temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
vno3_tc
(year, x, y)
float64
nan 0.0
- long_name :
- Sediment denitrification velocity
- units :
- m/d
- description :
- Sediment denitrification velocity temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
kon_tc
(year, x, y)
float64
nan 0.1
- long_name :
- Decay rate of OrgN to NH4
- units :
- 1/d
- description :
- Decay rate of OrgN to NH4 temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
kdnit_tc
(year, x, y)
float64
nan 0.002
- long_name :
- Denitrification rate
- units :
- 1/d
- description :
- Denitrification rate temperature correction
array([[[ nan]],\n",
+ "\n",
+ " [[0.002]]])
ApUptakeFr_NH4
(year, x, y)
float64
nan 0.5
- long_name :
- Fraction of actual floating algal uptake from ammonia pool
- units :
- unitless
- description :
- Fraction of actual floating algal uptake from ammonia pool
array([[[nan]],\n",
+ "\n",
+ " [[0.5]]])
ApUptakeFr_NO3
(year, x, y)
float64
nan 0.5
- long_name :
- Fraction of actual floating algal uptake from nitrate pool
- units :
- unitless
- description :
- Fraction of actual floating algal uptake from nitrate pool
array([[[nan]],\n",
+ "\n",
+ " [[0.5]]])
AbUptakeFr_NH4
(year, x, y)
float64
nan 0.5
- long_name :
- Fraction of actual benthic algal uptake from ammonia pool
- units :
- unitless
- description :
- Fraction of actual benthic algal uptake from ammonia pool
array([[[nan]],\n",
+ "\n",
+ " [[0.5]]])
AbUptakeFr_NO3
(year, x, y)
float64
nan 0.5
- long_name :
- Fraction of actual benthic algal uptake from nitrate pool
- units :
- unitless
- description :
- Fraction of actual benthic algal uptake from nitrate pool
array([[[nan]],\n",
+ "\n",
+ " [[0.5]]])
ApDeath_OrgN
(year, x, y)
float64
nan 0.00108
- long_name :
- Algae -> OrgN
- units :
- mg-N/L/d
- description :
- Algae conversion to Organic nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[0.00108]]])
AbDeath_OrgN
(year, x, y)
float64
nan 0.0175
- long_name :
- Benthic Algae -> OrgN
- units :
- mg-N/L/d
- description :
- Benthic algae conversion to Organic nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[0.017496]]])
OrgN_NH4_Decay
(year, x, y)
float64
nan 0.1
- long_name :
- OrgN -> NH4
- units :
- mg-N/L/d
- description :
- Organic nitrogen to ammonium decay
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
OrgN_Settling
(year, x, y)
float64
nan 0.01
- long_name :
- OrgN -> bed
- units :
- mg-N/L/d
- description :
- Organic nitrogen to bed settling
array([[[ nan]],\n",
+ "\n",
+ " [[0.01]]])
dOrgNdt
(year, x, y)
float64
nan -0.09142
- long_name :
- Change in organic nitrogen
- units :
- mg-N/L
- description :
- Change in organic nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[-0.091424]]])
NH4_Nitrification
(year, x, y)
float64
nan 0.04512
- long_name :
- NH4 -> NO3 Nitrification
- units :
- mg-N/L/d
- description :
- NH4 Nitrification
array([[[ nan]],\n",
+ "\n",
+ " [[0.04511884]]])
NH4fromBed
(year, x, y)
float64
nan 0.0
- long_name :
- bed -> NH4 (diffusion)
- units :
- mg-N/L/d
- description :
- Sediment bed release of NH4
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
NH4_ApRespiration
(year, x, y)
float64
nan 0.00144
- long_name :
- Floating algae -> NH4
- units :
- mg-N/L/d
- description :
- Floating algae to NH4
array([[[ nan]],\n",
+ "\n",
+ " [[0.00144]]])
NH4_ApGrowth
(year, x, y)
float64
nan 0.000529
- long_name :
- NH4 -> Floating algae
- units :
- mg-N/L/d
- description :
- NH4 uptake to algae
array([[[ nan]],\n",
+ "\n",
+ " [[0.00052905]]])
NH4_AbRespiration
(year, x, y)
float64
nan 0.0144
- long_name :
- Benthic algae -> NH4
- units :
- mg-N/L/d
- description :
- Benthic algae release of NH4
array([[[ nan]],\n",
+ "\n",
+ " [[0.0144]]])
NH4_AbGrowth
(year, x, y)
float64
nan 0.001323
- long_name :
- NH4 -> Benthic Algae
- units :
- mg-N/L/d
- description :
- Benthic algae uptake of NH4
array([[[ nan]],\n",
+ "\n",
+ " [[0.00132321]]])
dNH4dt
(year, x, y)
float64
nan 0.06887
- long_name :
- Change in ammonium concentration
- units :
- mg-N/L
- description :
- Change in ammonium concentration
array([[[ nan]],\n",
+ "\n",
+ " [[0.0688689]]])
NO3_Denit
(year, x, y)
float64
nan 0.0001818
- long_name :
- NO3 -> Loss
- units :
- mg-N/L/d
- description :
- NO3 loss from denitrification
array([[[ nan]],\n",
+ "\n",
+ " [[0.00018182]]])
NO3_BedDenit
(year, x, y)
float64
nan 0.0
- long_name :
- Sediment denitrification
- units :
- mg-N/L/d
- description :
- Sediment denitrification
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
NO3_ApGrowth
(year, x, y)
float64
nan 0.000529
- long_name :
- NO3 -> Floating algae
- units :
- mg-N/L/d
- description :
- NO3 uptake to floating algae
array([[[ nan]],\n",
+ "\n",
+ " [[0.00052905]]])
NO3_AbGrowth
(year, x, y)
float64
nan 0.001323
- long_name :
- NO3 -> Benthic algae
- units :
- mg-N/L/d
- description :
- NO3 uptake to benthic algae
array([[[ nan]],\n",
+ "\n",
+ " [[0.00132321]]])
dNO3dt
(year, x, y)
float64
nan 0.04308
- long_name :
- Change in nitrate concentration
- units :
- mg-N/L
- description :
- Change in nitrate concentration
array([[[ nan]],\n",
+ "\n",
+ " [[0.04308476]]])
DIN
(year, x, y)
float64
nan 2.0
- long_name :
- Dissolve inorganic nitrogen
- units :
- mg-N/L
- description :
- Dissolve inorganic nitrogen
array([[[nan]],\n",
+ "\n",
+ " [[ 2.]]])
TON
(year, x, y)
float64
nan 1.007
- long_name :
- Total organic nitrogen
- units :
- mg-N/L
- description :
- Total organic nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[1.0072]]])
TKN
(year, x, y)
float64
nan 2.007
- long_name :
- Total kjeldhl nitrogen
- units :
- mg-N/L
- description :
- Total kjeldhl nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[2.0072]]])
TN
(year, x, y)
float64
nan 3.007
- long_name :
- Total nitrogen
- units :
- mg-N/L
- description :
- Total nitrogen
array([[[ nan]],\n",
+ "\n",
+ " [[3.0072]]])
NitrificationInhibition
(year, x, y)
float64
nan 0.4512
- long_name :
- Nitrification Inhibitation (limits nitrification under low DO conditions)
- units :
- unitless
- description :
- Nitrification Inhibitation (limits nitrification under low DO conditions)
array([[[ nan]],\n",
+ "\n",
+ " [[0.45118836]]])
kop_tc
(year, x, y)
float64
nan 0.1
- long_name :
- Decay rate of organic P to DIP
- units :
- 1/d
- description :
- Decay rate of organic P to DIP temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
rpo4_tc
(year, x, y)
float64
nan 0.0
- long_name :
- Benthic sediment release rate of DIP
- units :
- g-P/m2/d
- description :
- Benthic sediment release rate of DIP temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
OrgP_DIP_decay
(year, x, y)
float64
nan 0.1
- long_name :
- Organic phosphorus decay to dissolve inorganic phosphorus
- units :
- mg-P/L/d
- description :
- Organic phosphorus decay to dissolve inorganic phosphorus
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
OrgP_Settling
(year, x, y)
float64
nan 999.0
- long_name :
- Organic phosphorus settling to sediment
- units :
- mg-P/L/d
- description :
- Organic phosphorus settling to sediment
array([[[ nan]],\n",
+ "\n",
+ " [[999.]]])
ApDeath_OrgP
(year, x, y)
float64
nan 0.00015
- long_name :
- Algal death turning into organic phosphorus
- units :
- mg-P/L/d
- description :
- Algal death turning into organic phosphorus
array([[[ nan]],\n",
+ "\n",
+ " [[0.00015]]])
AbDeath_OrgP
(year, x, y)
float64
nan 0.00243
- long_name :
- Benthic algal death turning into organic phosphorus
- units :
- mg-P/L/d
- description :
- Benthic algal death turning into organic phosphorus
array([[[ nan]],\n",
+ "\n",
+ " [[0.00243]]])
dOrgPdt
(year, x, y)
float64
nan -999.1
- long_name :
- Change in organic phosphorus concentration
- units :
- mg-P/L/d
- description :
- Change in organic phosphorus concentration
array([[[ nan]],\n",
+ "\n",
+ " [[-999.09742]]])
DIPfromBed
(year, x, y)
float64
nan 0.0
- long_name :
- Dissolved Organic Phosphorus coming from Bed calculated without SedFlux modules
- units :
- mg-P/L/d
- description :
- Dissolved Organic Phosphorus coming from Bed calculated without SedFlux modules
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
TIP_Settling
(year, x, y)
float64
nan 0.0
- long_name :
- Total inorganic phosphorus settling from water to bed
- units :
- mg-P/L/d
- description :
- Total inorganic phosphorus settling from water to bed
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
DIP_ApRespiration
(year, x, y)
float64
nan 0.0002
- long_name :
- Dissolved inorganic phosphorus released from algal respiration
- units :
- mg-P/L/d
- description :
- Dissolved inorganic phosphorus released from algal respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.0002]]])
DIP_ApGrowth
(year, x, y)
float64
nan 0.000147
- long_name :
- Dissolved inorganic phosphorus consumed for algal growth
- units :
- mg-P/L/d
- description :
- Dissolved inorganic phosphorus consumed for algal growth
array([[[ nan]],\n",
+ "\n",
+ " [[0.00014696]]])
DIP_AbRespiration
(year, x, y)
float64
nan 0.002
- long_name :
- Dissolved inorganic phosphorus released for benthic algal respiration
- units :
- mg-P/L/d
- description :
- Dissolved inorganic phosphorus released for benthic algal respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.002]]])
DIP_AbGrowth
(year, x, y)
float64
nan 0.0003676
- long_name :
- Dissolved inorganic phosphorus consumed for benthic algal growth
- units :
- mg-P/L/d
- description :
- Dissolved inorganic phosphorus consumed for benthic algal growth
array([[[ nan]],\n",
+ "\n",
+ " [[0.00036756]]])
dTIPdt
(year, x, y)
float64
nan 0.1017
- long_name :
- Change in dissolved inorganic phosphorus water concentration
- units :
- mg-P/L/d
- description :
- Change in dissolved inorganic phosphorus water concentration
array([[[ nan]],\n",
+ "\n",
+ " [[0.10168548]]])
TOP
(year, x, y)
float64
nan 1.001
- long_name :
- Total organic phosphorus
- units :
- mg-P/L
- description :
- Total organic phosphorus
array([[[ nan]],\n",
+ "\n",
+ " [[1.001]]])
TP
(year, x, y)
float64
nan 2.001
- long_name :
- Total phosphorus
- units :
- mg-P/L
- description :
- Total phosphorus
array([[[ nan]],\n",
+ "\n",
+ " [[2.001]]])
DIP
(year, x, y)
float64
nan 1.0
- long_name :
- Dissolve inorganic phosphorus
- units :
- mg-P/L
- description :
- Dissolve inorganic phosphorus
array([[[nan]],\n",
+ "\n",
+ " [[ 1.]]])
kpom_tc
(year, x, y)
float64
nan 0.1
- long_name :
- POM dissolution rate adjusted for temperature
- units :
- 1/d
- description :
- POM dissolution rate adjusted for temperature
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
POM_algal_settling
(year, x, y)
float64
nan 0.015
- long_name :
- POM concentration change due to algal settling
- units :
- mg/L/d
- description :
- POM concentration change due to algal settling
array([[[ nan]],\n",
+ "\n",
+ " [[0.015]]])
POM_dissolution
(year, x, y)
float64
nan 0.1
- long_name :
- POM concentration change due to dissolution
- units :
- mg/L/d
- description :
- POM concentration change due to dissolution
array([[[nan]],\n",
+ "\n",
+ " [[0.1]]])
POM_POC_settling
(year, x, y)
float64
nan 0.025
- long_name :
- POM concentration change due to POC settling
- units :
- mg/L/d
- description :
- POM concentration change due to POC settling
array([[[ nan]],\n",
+ "\n",
+ " [[0.025]]])
POM_benthic_algae_mortality
(year, x, y)
float64
nan 0.027
- long_name :
- POM concentration change due to algae mortality
- units :
- mg/L/d
- description :
- POM concentration change due to algae mortality
array([[[ nan]],\n",
+ "\n",
+ " [[0.027]]])
POM_burial
(year, x, y)
float64
nan 0.01
- long_name :
- POM concentration change due to burial
- units :
- mg/L/d
- description :
- POM concentration change due to burial
array([[[ nan]],\n",
+ "\n",
+ " [[0.01]]])
dPOMdt
(year, x, y)
float64
nan -0.043
- long_name :
- Change in POM concentration for one timestep
- units :
- mg/L/d
- description :
- Change in POM concentration for one timestep
array([[[ nan]],\n",
+ "\n",
+ " [[-0.043]]])
kbod_tc
(year, x, y)
float64
nan 0.12
- long_name :
- Temperature adjusted oxidation rate
- units :
- 1/d
- description :
- Temperature adjusted oxidation rate
array([[[ nan]],\n",
+ "\n",
+ " [[0.12]]])
ksbod_tc
(year, x, y)
float64
nan 0.0
- long_name :
- Temperature adjusted sedimentation rate
- units :
- m/d
- description :
- Temperature adjusted sedimentation rate
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
CBOD_oxidation
(year, x, y)
float64
nan 0.08
- long_name :
- CBOD oxidation
- units :
- mg/L/d
- description :
- CBOD oxidation
array([[[ nan]],\n",
+ "\n",
+ " [[0.08]]])
CBOD_sedimentation
(year, x, y)
float64
nan 0.0
- long_name :
- CBOD sedimentation
- units :
- mg/L/d
- description :
- CBOD sedimentation
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
dCBODdt
(year, x, y)
float64
nan -0.08
- long_name :
- Change in CBOD concentration for the given timestep
- units :
- mg/L/d
- description :
- Change in CBOD concentration for the given timestep
array([[[ nan]],\n",
+ "\n",
+ " [[-0.08]]])
kpoc_tc
(year, x, y)
float64
nan 0.005
- long_name :
- Temperature adjusted POC hydrolysis rate
- units :
- 1/d
- description :
- Temperature adjusted POC hydrolysis rate
array([[[ nan]],\n",
+ "\n",
+ " [[0.005]]])
POC_settling
(year, x, y)
float64
nan 0.01
- long_name :
- POC concentration removed from cell due to settling
- units :
- mg/L/d
- description :
- POC concentration removed from cell due to settling
array([[[ nan]],\n",
+ "\n",
+ " [[0.01]]])
POC_hydrolysis
(year, x, y)
float64
nan 0.005
- long_name :
- POC concentration removed from cell due to hydrolysis
- units :
- mg/L/d
- description :
- POC concentration removed from cell due to hydrolysis
array([[[ nan]],\n",
+ "\n",
+ " [[0.005]]])
POC_algal_mortality
(year, x, y)
float64
nan 0.0054
- long_name :
- POC concentration added to cell due to algal mortality
- units :
- mg/L/d
- description :
- POC concentration added to cell due to algal mortality
array([[[ nan]],\n",
+ "\n",
+ " [[0.0054]]])
POC_benthic_algae_mortality
(year, x, y)
float64
nan 0.08748
- long_name :
- POC concentration added to cell due to benthic algae mortality
- units :
- mg/L/d
- description :
- POC concentration added to cell due to benthic algae mortality
array([[[ nan]],\n",
+ "\n",
+ " [[0.08748]]])
dPOCdt
(year, x, y)
float64
nan 0.07788
- long_name :
- POC concentration change per timestep
- units :
- mg/L/d
- description :
- POC concentration change per timestep
array([[[ nan]],\n",
+ "\n",
+ " [[0.07788]]])
kdoc_tc
(year, x, y)
float64
nan 0.01
- long_name :
- Dissolved organic carbon oxidation rate adjusted for temperature
- units :
- 1/d
- description :
- Dissolved organic carbon oxidation rate adjusted for temperature
array([[[ nan]],\n",
+ "\n",
+ " [[0.01]]])
DOC_algal_mortality
(year, x, y)
float64
nan 0.0006
- long_name :
- DOC concentration added to cell due to algal mortality
- units :
- mg/L/d
- description :
- DOC concentration added to cell due to algal mortality
array([[[ nan]],\n",
+ "\n",
+ " [[0.0006]]])
DOC_benthic_algae_mortality
(year, x, y)
float64
nan 0.00972
- long_name :
- DOC concentration added to cell due to benthic algae mortality
- units :
- mg/L/d
- description :
- DOC concentration added to cell due to benthic algae mortality
array([[[ nan]],\n",
+ "\n",
+ " [[0.00972]]])
DOC_DIC_oxidation
(year, x, y)
float64
nan 0.005
- long_name :
- DOC concentration lost to cell due to oxidation
- units :
- mg/L/d
- description :
- DOC concentration lost to cell due to oxidation
array([[[ nan]],\n",
+ "\n",
+ " [[0.005]]])
dDOCdt
(year, x, y)
float64
nan 0.01032
- long_name :
- DOC concentration change per timestep
- units :
- mg/L/d
- description :
- DOC concentration change per timestep
array([[[ nan]],\n",
+ "\n",
+ " [[0.01032]]])
K_H
(year, x, y)
float64
nan 0.03931
- long_name :
- Henrys coefficient
- units :
- mol/L-atm
- description :
- Henrys coefficient controlling the relative proportion of gaseous and aqueous phase CO2
array([[[ nan]],\n",
+ "\n",
+ " [[0.03931489]]])
Atm_CO2_reaeration
(year, x, y)
float64
nan -1.987e+04
- long_name :
- Atmospheric CO2 reaeration
- units :
- mg/L/d
- description :
- Amount of DIC concentration change due to atmospheric exchange
array([[[ nan]],\n",
+ "\n",
+ " [[-19871.39779666]]])
DIC_algal_respiration
(year, x, y)
float64
nan 0.008
- long_name :
- DIC generated by algal respiration
- units :
- mg/L/d
- description :
- DIC generated by algal respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.008]]])
DIC_algal_photosynthesis
(year, x, y)
float64
nan 0.005878
- long_name :
- DIC consumed by algal photosynthesis
- units :
- mg/L/d
- description :
- DIC consumed by algal photosynthesis
array([[[ nan]],\n",
+ "\n",
+ " [[0.00587831]]])
DIC_benthic_algae_respiration
(year, x, y)
float64
nan 0.072
- long_name :
- DIC generated by benthic algae respiration
- units :
- mg/L/d
- description :
- DIC generated by benthic algae respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.072]]])
DIC_benthic_algae_photosynthesis
(year, x, y)
float64
nan 0.0147
- long_name :
- DIC consumed by benthic algae photosynthesis
- units :
- mg/L/d
- description :
- DIC consumed by benthic algae photosynthesis
array([[[ nan]],\n",
+ "\n",
+ " [[0.01470235]]])
DIC_CBOD_oxidation
(year, x, y)
float64
nan 0.03
- long_name :
- DIC concentration change due to CBOD oxidation
- units :
- mg/L/d
- description :
- DIC concentration change due to CBOD oxidation
array([[[ nan]],\n",
+ "\n",
+ " [[0.03]]])
DIC_sed_release
(year, x, y)
float64
nan 187.3
- long_name :
- DIC concentration change due to sediment release
- units :
- mg/L/d
- description :
- DIC concentration change due to sediment release
array([[[ nan]],\n",
+ "\n",
+ " [[187.3125]]])
dDICdt
(year, x, y)
float64
nan -1.968e+04
- long_name :
- DIC concentration change per timestep
- units :
- mg/L/d
- description :
- DIC concentration change per timestep
array([[[ nan]],\n",
+ "\n",
+ " [[-19683.99587732]]])
DOX_sat
(year, x, y)
float64
nan 0.0
- long_name :
- DO saturation concentration
- units :
- mg/L
- description :
- DO saturation concentration in water as a function of water temperature (K)
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
pwv
(year, x, y)
float64
nan 0.02309
- long_name :
- Partial pressure of water vapor
- units :
- atm
- description :
- Partial pressure of water vapor
array([[[ nan]],\n",
+ "\n",
+ " [[0.02308854]]])
DOs_atm_alpha
(year, x, y)
float64
nan 0.002326
- long_name :
- DO saturation atmospheric correction coefficient
- units :
- unitless
- description :
- DO saturation atmospheric correction coefficient
array([[[ nan]],\n",
+ "\n",
+ " [[0.00232582]]])
Atm_O2_reaeration
(year, x, y)
float64
nan -8.28
- long_name :
- Atmospheric oxygen reaeration
- units :
- mg/L/d
- description :
- Atmospheric oxygen reaeration, can fluctuate both in and out of waterbody
array([[[ nan]],\n",
+ "\n",
+ " [[-8.28037249]]])
DOX_ApGrowth
(year, x, y)
float64
nan 0.01804
- long_name :
- Dissolved oxygen flux due to algal photosynthesis
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to algal photosynthesis
array([[[ nan]],\n",
+ "\n",
+ " [[0.01804162]]])
DOX_ApRespiration
(year, x, y)
float64
nan 0.02133
- long_name :
- Dissolved oxygen flux due to algal respiration
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to algal respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.02133333]]])
DOX_Nitrification
(year, x, y)
float64
nan 0.2063
- long_name :
- Dissolved oxygen flux due to nitrification
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to nitrification
array([[[ nan]],\n",
+ "\n",
+ " [[0.20625754]]])
DOX_DOC_oxidation
(year, x, y)
float64
nan 0.01333
- long_name :
- Dissolved oxygen flux due to DOC oxidation
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to DOC oxidation
array([[[ nan]],\n",
+ "\n",
+ " [[0.01333333]]])
DOX_CBOD_oxidation
(year, x, y)
float64
nan 0.08
- long_name :
- Dissolved oxygen flux due to CBOD oxidation
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to CBOD oxidation
array([[[ nan]],\n",
+ "\n",
+ " [[0.08]]])
DOX_AbGrowth
(year, x, y)
float64
nan 0.04512
- long_name :
- Dissolved oxygen flux due to benthic algae photosynthesis
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to benthic algae photosynthesis
array([[[ nan]],\n",
+ "\n",
+ " [[0.04512419]]])
DOX_AbRespiration
(year, x, y)
float64
nan 0.192
- long_name :
- Dissolved oxygen flux due to benthic algae respiration
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to benthic algae respiration
array([[[ nan]],\n",
+ "\n",
+ " [[0.192]]])
DOX_SOD
(year, x, y)
float64
nan 499.5
- long_name :
- Dissolved oxygen flux due to sediment oxygen demand
- units :
- mg/L/d
- description :
- Dissolved oxygen flux due to sediment oxygen demand
array([[[ nan]],\n",
+ "\n",
+ " [[499.5]]])
dDOXdt
(year, x, y)
float64
nan -508.2
- long_name :
- Change in dissolved oxygen concentration for one timestep
- units :
- mg/L/d
- description :
- Change in dissolved oxygen concentration for one timestep
array([[[ nan]],\n",
+ "\n",
+ " [[-508.23013089]]])
kdx_tc
(year, x, y)
float64
nan 0.8
- long_name :
- Pathogen death rate
- units :
- 1/d
- description :
- Pathogen death rate with temperature correction
array([[[nan]],\n",
+ "\n",
+ " [[0.8]]])
PathogenDeath
(year, x, y)
float64
nan 0.8
- long_name :
- Pathogen natural death
- units :
- cfu/100mL/d
- description :
- Pathogen natural death
array([[[nan]],\n",
+ "\n",
+ " [[0.8]]])
PathogenDecay
(year, x, y)
float64
nan 3.758
- long_name :
- Pathogen death due to light
- units :
- cfu/100mL/d
- description :
- Pathogen death due to light
array([[[ nan]],\n",
+ "\n",
+ " [[3.75770698]]])
PathogenSettling
(year, x, y)
float64
nan 1.0
- long_name :
- Pathogen settling
- units :
- cfu/100mL/d
- description :
- Pathogen settling
array([[[nan]],\n",
+ "\n",
+ " [[ 1.]]])
dPXdt
(year, x, y)
float64
nan -5.558
- long_name :
- Change in pathogen concentration
- units :
- cfu/100mL/d
- description :
- Change in pathogen concentration
array([[[ nan]],\n",
+ "\n",
+ " [[-5.55770698]]])
Alk_denitrification
(year, x, y)
float64
nan 0.0001818
- long_name :
- Alkalinity change due to denitrification
- units :
- mg/L/d
- description :
- Alkalinity change due to denitrification
array([[[ nan]],\n",
+ "\n",
+ " [[0.00018182]]])
Alk_nitrification
(year, x, y)
float64
nan 0.04512
- long_name :
- Alkalinity change due to nitrification
- units :
- mg/L/d
- description :
- Alkalinity change due to nitrification
array([[[ nan]],\n",
+ "\n",
+ " [[0.04511884]]])
Alk_algal_growth
(year, x, y)
float64
nan 0.0
- long_name :
- Alkalinity change due to algal growth
- units :
- mg/L/d
- description :
- Alkalinity change due to algal growth
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
Alk_algal_respiration
(year, x, y)
float64
nan 0.2
- long_name :
- Alkalinity change due to algal respiration
- units :
- mg/L/d
- description :
- Alkalinity change due to algal respiration
array([[[nan]],\n",
+ "\n",
+ " [[0.2]]])
Alk_benthic_algae_growth
(year, x, y)
float64
nan 0.0
- long_name :
- Alkalinity change due to benthic algae growth
- units :
- mg/L/d
- description :
- Alkalinity change due to benthic algae growth
array([[[nan]],\n",
+ "\n",
+ " [[ 0.]]])
Alk_benthic_algae_respiration
(year, x, y)
float64
nan 0.18
- long_name :
- Alkalinity change due to benthic algae growth
- units :
- mg/L/d
- description :
- Alkalinity change due to benthic algae growth
array([[[ nan]],\n",
+ "\n",
+ " [[0.18]]])
dAlkdt
(year, x, y)
float64
nan 0.3351
- long_name :
- Alkalinity concentration change per timestep
- units :
- mg/L/d
- description :
- Alkalinity concentration change per timestep
array([[[ nan]],\n",
+ "\n",
+ " [[0.33506298]]])
KHN2_tc
(year, x, y)
float64
nan 0.0007001
- long_name :
- Henrys law constant
- units :
- mol/L/atm
- description :
- Henrys law constant temperature corrected
array([[[ nan]],\n",
+ "\n",
+ " [[0.00070008]]])
P_wv
(year, x, y)
float64
nan 0.02309
- long_name :
- Partial pressure water vapor
- units :
- atm
- description :
- Partial pressure water vapor
array([[[ nan]],\n",
+ "\n",
+ " [[0.02308854]]])
N2sat
(year, x, y)
float64
nan 30.61
- long_name :
- N2 at saturation
- units :
- mg-N/L
- description :
- N2 at saturation f(Twater and atm pressure)
array([[[ nan]],\n",
+ "\n",
+ " [[30.6138397]]])
dN2dt
(year, x, y)
float64
nan 253.6
- long_name :
- Change in N2 air concentration
- units :
- mg-N/L/d
- description :
- Change in N2 air concentration
array([[[ nan]],\n",
+ "\n",
+ " [[253.55088691]]])
TDG
(year, x, y)
float64
nan inf
- long_name :
- Total dissolved gas
- units :
- %
- description :
- Total dissolved gas
array([[[nan]],\n",
+ "\n",
+ " [[inf]]])