From 1b8589a6291d3d6e61b17698e0ed249244ddb038 Mon Sep 17 00:00:00 2001 From: shainova Date: Thu, 30 Nov 2023 20:38:46 +0000 Subject: [PATCH] Update citations --- _cite/.cache/cache.db | Bin 90112 -> 90112 bytes _data/citations.yaml | 487 ++++++++++++++++++++++++++++++++++++++++++ 2 files changed, 487 insertions(+) create mode 100644 _data/citations.yaml diff --git a/_cite/.cache/cache.db b/_cite/.cache/cache.db index 8b877b71d8d555b09f86db1295d191534947dd38..bc6c16ccdb9e6bf6f28e9bd0ae6eb2e7ecb51e31 100644 GIT binary patch delta 364 zcmZvXO-{l<6o8#hnE126nDA3vNLNOUZ3w}oaFfYos4_C`l+H|PDG9`NcXI`GP2vUc z7+k?qSb{_o-G1-Od*55GE6a6d_2L3$UfnL3n2mdV6T^!`MIJE=hkn{D=CB8bOpbBH z=$QLBiiHwX@Jh4DjqA1S8SEU%31`a3G7IS_7NO9xQDlaAHb_nGowugYv%Vcl=%_T= z%x@pmio~qE#+il=pqg{cS-{lsWg*`;-f0!Y=JWopjC1<+g{(ryl8PuM6{8YOY}m8@ z3q$h;?Cd513-JRhqqpZ!zU6;Q(X0k<_dEzlw6n7&?C$B4&?j+7I1a?nN2&Sf*RQ6( Zwh^raP6*XHK*_fA=NY7*2X6z={sQIZeG32p delta 364 zcmZvX%T59@6hJKvjgJM!1ct$durg|#2_d)?{-kM2fy?wU($@G`NL(HJdKV3w-EPIQV9y&{%J9KU#5o@Gz_2DSF5;Iul6*m;8w{x=D<4OmWUX4OaFzD zJi_hGM1iJ5SVgbT5wqrhONp-H%Pm)m#ve>IlT?|3AToUPYG>K6ZOl7E VZyEPqk;%IA=NSUe{kJ}9egOsgd+PuI diff --git a/_data/citations.yaml b/_data/citations.yaml new file mode 100644 index 000000000..74ab38a14 --- /dev/null +++ b/_data/citations.yaml @@ -0,0 +1,487 @@ +# DO NOT EDIT, GENERATED AUTOMATICALLY + +- id: doi:10.32942/X28G7K + title: Local and regional processes drive distance decay in structure in a spatial + multilayer plant-pollinator network + authors: + - Agustin Vitali + - Maya Goldstein + - Matan Markfeld + - Shai Pilosof + publisher: California Digital Library (CDL) + date: '2023-11-21' + link: https://doi.org/gs7gsx + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.32942/X2161C + title: Scale-dependent signatures of microbial co-occurrence revealed via multilayer + network analysis + authors: + - Geut Galai + - Dafna Arbel + - Keren Klass + - Ido Grinshpan + - Itzhak Mizrahi + - Shai Pilosof + publisher: California Digital Library (CDL) + date: '2023-11-01' + link: https://doi.org/gs7gsz + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/2041-210X.14225 + title: Practical guidelines and the EMLN R package for handling ecological + multilayer networks + authors: + - Noa Frydman + - Shirly Freilikhman + - Itamar Talpaz + - Shai Pilosof + publisher: Methods in Ecology and Evolution + date: '2023-10-18' + link: https://doi.org/gs7gs2 + orcid: 0000-0003-0430-5568 + plugin: sources.py + file: sources.yaml + type: paper + description: EMLN package and guidelines + image: https://besjournals.onlinelibrary.wiley.com/cms/asset/d12add0e-b1fd-4727-9d4d-affcbc5e65c8/mee314225-fig-0001-m.jpg + buttons: + - type: website + link: https://ecological-complexity-lab.github.io/emln_package/ + tags: + - R + - package + repo: https://github.com/Ecological-Complexity-Lab/emln_package +- id: doi:10.1038/s41467-023-41906-2 + title: Ecological network analysis reveals cancer-dependent chaperone-client interaction + structure and robustness + authors: + - Geut Galai + - Xie He + - Barak Rotblat + - Shai Pilosof + publisher: Nature Communications + date: '2023-10-07' + link: https://doi.org/gs7gs3 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.32942/X2PG6X + title: Practical guidelines and the EMLN R package for handling ecological multilayer + networks + authors: + - Noa Frydman + - Shirly Freilikhman + - Itamar Talpaz + - Shai Pilosof + publisher: California Digital Library (CDL) + date: '2023-07-25' + link: https://doi.org/gs7gs4 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.tim.2023.01.007 + title: "Conceptualizing microbe\u2013plasmid communities as complex adaptive systems" + authors: + - Shai Pilosof + publisher: Trends in Microbiology + date: '2023-07-01' + link: https://doi.org/gs7gs5 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1098/rspb.2023.0132 + title: Invasive species modulate the structure and stability of a multilayer mutualistic + network + authors: + - Agustin Vitali + - "Sof\xEDa Ruiz-Suarez" + - "Diego P. V\xE1zquez" + - Matthias Schleuning + - "Mariano A. Rodr\xEDguez-Cabal" + - Yamila Sasal + - Shai Pilosof + publisher: 'Proceedings of the Royal Society B: Biological Sciences' + date: '2023-06-28' + link: https://doi.org/gs7gs6 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.32942/X2WS3R + title: Conceptualizing microbe-plasmid communities as complex adaptive systems + authors: + - Shai Pilosof + publisher: California Digital Library (CDL) + date: '2023-02-19' + link: https://doi.org/gs7gs7 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2022.12.25.521894 + title: Invasive species modulate the structure and stability of a multilayer mutualistic + network + authors: + - Agustin Vitali + - "Sof\xEDa Ruiz-Suarez" + - "Diego P. V\xE1zquez" + - Matthias Schleuning + - "Mariano A. Rodr\xEDguez-Cabal" + - Yamila Sasal + - Shai Pilosof + publisher: Cold Spring Harbor Laboratory + date: '2022-12-25' + link: https://doi.org/gs7gs8 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2022.11.24.517852 + title: Ecological network analysis reveals cancer-dependent chaperone-client interaction + structure and robustness in the mitochondria + authors: + - Geut Galai + - Barak Rotblat + - Shai Pilosof + publisher: Cold Spring Harbor Laboratory + date: '2022-11-25' + link: https://doi.org/gs7gs9 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1101/2022.09.08.507140 + title: Multilayer Networks of Plasmid Genetic Similarity Reveal Potential Pathways + of Gene Transmission + authors: + - Julie Teresa Shapiro + - Alvah Zorea + - Aya Brown Kav + - Vicente J. Ontiveros + - Itzak Mizrahi + - Shai Pilosof + publisher: Cold Spring Harbor Laboratory + date: '2022-09-11' + link: https://doi.org/gs7gtb + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1371/journal.pcbi.1009319 + title: The interplay between vaccination and social distancing strategies affects + COVID19 population-level outcomes + authors: + - Sharon Guerstein + - Victoria Romeo-Aznar + - "Ma\u2019ayan Dekel" + - Oren Miron + - Nadav Davidovitch + - Rami Puzis + - Shai Pilosof + publisher: PLOS Computational Biology + date: '2021-08-20' + link: https://doi.org/gs7gtc + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3389/fevo.2021.633263 + title: Frequency-Dependent Competition Between Strains Imparts Persistence to Perturbations + in a Model of Plasmodium falciparum Malaria Transmission + authors: + - Qixin He + - Shai Pilosof + - Kathryn E. Tiedje + - Karen P. Day + - Mercedes Pascual + publisher: Frontiers in Ecology and Evolution + date: '2021-05-26' + link: https://doi.org/gn5626 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/2041-210X.13569 + title: Identifying flow modules in ecological networks using Infomap + authors: + - Carmel Farage + - Daniel Edler + - "Anna Ekl\xF6f" + - Martin Rosvall + - Shai Pilosof + publisher: Methods in Ecology and Evolution + date: '2021-02-24' + link: https://doi.org/gjhqt7 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1038/s41559-020-01312-z + title: The network structure and eco-evolutionary dynamics of CRISPR-induced immune + diversification + authors: + - Shai Pilosof + - "Sergio A. Alcal\xE1-Corona" + - Tong Wang + - Ted Kim + - Sergei Maslov + - Rachel Whitaker + - Mercedes Pascual + publisher: Nature Ecology & Evolution + date: '2020-10-19' + link: https://doi.org/gkzj6c + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.3390/cancers12040825 + title: Pan-Cancer Analysis of Mitochondria Chaperone-Client Co-Expression Reveals + Chaperone Functional Partitioning + authors: + - Geut Galai + - Hila Ben-David + - Liron Levin + - Martin F. Orth + - "Thomas G. P. Gr\xFCnewald" + - Shai Pilosof + - Shimon Bershtein + - Barak Rotblat + publisher: Cancers + date: '2020-03-30' + link: https://doi.org/gmrxfg + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1371/journal.pbio.3000336 + title: Competition for hosts modulates vast antigenic diversity to generate persistent + strain structure in Plasmodium falciparum + authors: + - Shai Pilosof + - Qixin He + - Kathryn E. Tiedje + - "Shazia Ruybal-Pes\xE1ntez" + - Karen P. Day + - Mercedes Pascual + publisher: PLOS Biology + date: '2019-06-24' + link: https://doi.org/gs7gtd + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1038/s41467-018-04219-3 + title: Networks of genetic similarity reveal non-neutral processes shape strain + structure in Plasmodium falciparum + authors: + - Qixin He + - Shai Pilosof + - Kathryn E. Tiedje + - "Shazia Ruybal-Pes\xE1ntez" + - Yael Artzy-Randrup + - Edward B. Baskerville + - Karen P. Day + - Mercedes Pascual + publisher: Nature Communications + date: '2018-05-08' + link: https://doi.org/gdjghd + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.jtbi.2017.07.020 + title: Asymmetric disease dynamics in multihost interconnected networks + authors: + - Shai Pilosof + - Gili Greenbaum + - Boris R. Krasnov + - Yuval R. Zelnik + publisher: Journal of Theoretical Biology + date: '2017-10-01' + link: https://doi.org/gbv8p2 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1038/s41559-017-0101 + title: The multilayer nature of ecological networks + authors: + - Shai Pilosof + - Mason A. Porter + - Mercedes Pascual + - "Sonia K\xE9fi" + publisher: Nature Ecology & Evolution + date: '2017-03-23' + link: https://doi.org/gbrzt4 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: ':' + title: Temporal dynamics of direct reciprocal and indirect effects in a host--parasite + network + publisher: Journal of Animal Ecology + date: '2017-03-25' + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/1365-2656.12134 + title: "A trade\u2010off between quantity and quality of offspring in haematophagous\ + \ ectoparasites: the effect of the level of specialization" + authors: + - Irina S. Khokhlova + - Shai Pilosof + - Laura J. Fielden + - A. Allan Degen + - Boris R. Krasnov + publisher: Journal of Animal Ecology + date: '2013-09-23' + link: https://doi.org/f5t93k + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/j.1600-0706.2013.00646.x + title: "Co\u2010occurrence and phylogenetic distance in communities of mammalian\ + \ ectoparasites: limiting similarity versus environmental filtering" + authors: + - Boris R. Krasnov + - Shai Pilosof + - Michal Stanko + - Serge Morand + - "Natalia P. Korallo\u2010Vinarskaya" + - Maxim V. Vinarski + - Robert Poulin + publisher: Oikos + date: '2013-06-21' + link: https://doi.org/f5mdh3 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1017/s0031182013001376 + title: 'Phylogenetic structure of host spectra in Palaearctic fleas: stability versus + spatial variation in widespread, generalist species' + authors: + - BORIS R. KRASNOV + - SHAI PILOSOF + - GEORGY I. SHENBROT + - IRINA S. KHOKHLOVA + - A. ALLAN DEGEN + publisher: Parasitology + date: '2013-09-04' + link: https://doi.org/f5t3n6 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.mambio.2013.10.005 + title: Effects of sewage-water contamination on the immune response of a desert + bat + authors: + - Shai Pilosof + - Carmi Korine + - Marianne S. Moore + - Boris R. Krasnov + publisher: Mammalian Biology + date: '2014-04-01' + link: https://doi.org/gn5r7v + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1080/15659801.2013.865338 + title: 'FOREWORD: Evolution of culture' + authors: + - Reut Berger-Tal + - Elsita Kiekebusch + - Iara Sandomirsky + - Shai Pilosof + publisher: Israel Journal of Ecology and Evolution + date: '2013-05-18' + link: https://doi.org/gs7gtf + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1890/13-0678.1 + title: "Multiple effects of host\u2010species diversity on coexisting host\u2010\ + specific and host\u2010opportunistic microbes" + authors: + - Hadar Kedem + - Carmit Cohen + - Irit Messika + - Monica Einav + - Shai Pilosof + - Hadas Hawlena + publisher: Ecology + date: '2014-05-01' + link: https://doi.org/f549rc + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/1365-2656.12101 + title: Phylogeny determines the role of helminth parasites in intertidal food webs + authors: + - Robert Poulin + - Boris R. Krasnov + - Shai Pilosof + - David W. Thieltges + publisher: Journal of Animal Ecology + date: '2013-06-25' + link: https://doi.org/f5ftt7 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1016/j.ijpara.2013.05.001 + title: Spatial variation in the phylogenetic structure of flea assemblages across + geographic ranges of small mammalian hosts in the Palearctic + authors: + - Boris R. Krasnov + - Shai Pilosof + - Georgy I. Shenbrot + - Irina S. Khokhlova + publisher: International Journal for Parasitology + date: '2013-08-01' + link: https://doi.org/f45ch5 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1111/1365-2656.12090 + title: "Temporal dynamics of direct reciprocal and indirect effects in a host\u2013\ + parasite network" + authors: + - Shai Pilosof + - Miguel A. Fortuna + - Maxim V. Vinarski + - "Natalia P. Korallo\u2010Vinarskaya" + - Boris R. Krasnov + publisher: Journal of Animal Ecology + date: '2013-05-14' + link: https://doi.org/f47vn5 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1371/journal.pone.0041487 + title: Effects of Anthropogenic Disturbance and Climate on Patterns of Bat Fly Parasitism + authors: + - Shai Pilosof + - Carl W. Dick + - Carmi Korine + - Bruce D. Patterson + - Boris R. Krasnov + publisher: PLoS ONE + date: '2012-07-19' + link: https://doi.org/gs7gtg + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1017/s0031182012001205 + title: 'Host body microcosm and ectoparasite infracommunities: arthropod ectoparasites + are not spatially segregated' + authors: + - SHAI PILOSOF + - MARCELA LARESCHI + - BORIS R. KRASNOV + publisher: Parasitology + date: '2012-09-05' + link: https://doi.org/f4bx5z + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml +- id: doi:10.1644/09-mamm-a-370.1 + title: Variability in urine concentration and fecal water content of bats in a tropical + deciduous forest + authors: + - Shai Pilosof + - L. Gerardo Herrera M. + publisher: Journal of Mammalogy + date: '2010-06-16' + link: https://doi.org/bn23j5 + orcid: 0000-0003-0430-5568 + plugin: orcid.py + file: orcid.yaml