v0.7.1

Enhancements

• Drag-and-drop samples to reorder (#913)
• Restore functionality for File Import tab in Options (#946)
• Option to filter out unmarked or bad groups when sending data to Polly (#904)
• Give warnings in CLI if data is incompatible with selected Polly app
• Add column for ms2Purity in CSV export for DDA data

UI/UX

• Keep isotope detection disabled for untargeted peak detection in Peaks (#1041)
• Sync mass resolution values between mainwindow and peaks dialog (#804)
• Sort samples in ascending order by default (#807)
• Show adverts for Polly apps if user does not have a license
• Keep isotope plot and srmList widgets hidden by default
• Handle duplicates across different compound databases (#1003)

Bug fixes

• Isotope widget used to crash periodically (#757)
• Clicking on MS2 markers when no other widgets are open in the bottom area led to crashes
• Fixed crash on running untargeted peak detection on samples with MS3 level (#1040)
• Fixed crash in exporting untargeted peak table as CSV

Others

• El-MAVEN will fetch Polly-dependent code for the integration from a separate repository
• More error handling in Polly integration
• Updated README for all platforms
• Added option to stop building tests
• Removed unused files from the repo
• Sending a userID (same as current clientID) to Google Analytics

v0.7.0

Features

• MS/MS workflow with fragmentation matching (#974 )
• Save user settings in project format (.emDB) for a complete session restore experience (#969 )
• Peak classification (good/bad) on PollyPhi through Polly^TM integration
• Metabolite quantification using QuantFit in Polly^TM integration for GUI and CLI (#984 )
• Project files from MAVEN (.mzrollDB) can be imported

Enhancements

• Read more fields from spectral library files (.msp) (#965 )
• Preserve multiple fragmentation records per compound from MSP files (#965 )
• Save 'peakSplineArea' and 'sample color' in project format (.emDB)
• Obi-warp alignment will work for MS/MS data where MS1 information is available

UI/UX

• Warning if sample polarity and spectral library (.msp) polarity do not match (#965 )
• Save last opened folder for database files (#965 )
• Add 'note' column in compound widget (#558 )
• Switch on isotope detection with C13 by default
• Deprecated tag for NA correction and mzroll format (#586 )
• Sample colors can only be changed manually once assigned during import (#634)

Bug Fixes

• Fixed missing sample intensities in CSV exported from emDB session (#976 )
• Manually integrated peaks had zero 'peakSplineArea' in Peak Detailed Format CSV
• Last compound was not read from spectral library files (.msp) (#965 )
• Low quality groups reported in automated detection (#970 )
• Values for 'abundance' and 'expected RtDiff' were switched in .emDB project (#962 )
• .emDB projects were not autosaved on Windows (#1007 )
• Fix crash on changing mass resolution with isotope widget open (#918 )
• Fix crash on deleting all samples

Others

• Project format (.emDB) versioning and backward-compatibility changes
• Updated build script for Mac OS (#1002)
• Added a code style guide for the project (#840)
• Improved crash-reports to ease the debugging process (#961 )
• Improve stability of crashreporter (#961 )
• Remove version from binary name
• Updated installation instructions in README for all platforms (#1002 )
• Refactor code for Polly-El-MAVEN integration
• Add triggers for Google Analytics

v0.7.0-beta

Merge #1023 from ElucidataInc/fix_beta

Fix beta

v0.7.0-alpha

Merge branch 'fix_tests' into develop

v0.6.1

Features

• Persistent autosave for sessions (.emDB) (#149 )

Enhancements

• Cancel Obi-warp alignment (#329 )
• Performance improvement in Mac builds ('O3' optimization flag)
• Undo alignment restores original RTs irrespective of which algorithm is selected (#329 )
• Increase .emDB loading speed for MS/MS data
• Disable Obi-warp alignment button for unsupported datasets

UI/UX

• Load last used compounds DB when loading .emDB
• Open bookmarks table if .emDB populates it

Bug Fixes

• Fixed unresponsive UI when user opens Polly Dialog with no internet connection in Mac
• Fixed El-MAVEN recognizing most .emDB files as empty (#940 )
• Handle a crash point in Obi-warp alignment
• Restore state of undo alignment button for .emDB projects
• Fix infinite crash reporter dialogs on Mac systems
• Fixed explicit save operation using timestamp project name.
• Fixed threaded save not setting last saved project.
• Fixed no save before new session load.
• Fixed emDB load crashing on Windows.

Other

• Add Google Analytics triggers as part of UX research (#717 )
• Use more portable command to obtain number of processors

v0.6.1-beta.1

Merge #952 from saifulbkhan/fix_emdb_unable_to_load

Fix loading emDB files crashing El-MAVEN

v0.6.1-beta

Merge #927 from ElucidataInc/ui_selectIcon

Add a selected state for Polly Icons

v0.6.0

Features

• Add option to choose ref sample in obi-warp (#788 )
• Add AsLS Smoothing algo for baseline estimation (#583 )
• Save session data as SQLite file (.emDB) (#149 )

Enhancements

• Multiprocess sample upload on Mac
• Multiprocess Obi-warp alignment on all platforms (#859 )
• Close button for every alignment viz widget (#361 )
• Prompt to save session before exiting the application

UI/UX

• Move all alignment viz widget icons under one icon
• Rename alignment viz widgets
• Deprecated sign for Loess Fit (#586 )
• Disable undo alignment when no alignment performed (#329 #938 )
• Show progress of Obi-warp alignment (#787 )

Other

• Tests for Obi-warp
• Tests for AsLSS baseline
• Refactor sample upload in tests

v0.6.0-beta

Merge #928 from ElucidataInc/ui_disableUndoAlignment

 Disable undo button when alignment is not in effect

v0.6.0-alpha

Merge #922 from saifulbkhan/ftr_sqlite_project

[Ftr] SQLite based project