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ClinPred.pm with GRCh38? #719

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IanCodes opened this issue May 29, 2024 · 2 comments
Open

ClinPred.pm with GRCh38? #719

IanCodes opened this issue May 29, 2024 · 2 comments
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@IanCodes
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Hello,

Are there plans to update the ClinPred.pm to work with GRCh38 data? The files for this assembly are available, but not compatible.
https://drive.google.com/file/d/1e0kd9hO1uCEuGzAhwEmLCNluqDFJE28y/view

Thank you,
Ian

@olaaustine olaaustine self-assigned this May 29, 2024
@olaaustine
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Hi @IanCodes,
Thank you for bringing this to our attention.
We will add this support and this will be included in the future releases
I will update this ticket once the changes have been merged.
Thank you
Ola.

@davmlaw
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davmlaw commented Aug 1, 2024

As a work around, you can use dbNSFP plugin which includes ClinPred and a ClinPred rank score. This works for 37 and 38

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