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app_t_sites_positive_selection.tex
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app_t_sites_positive_selection.tex
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\footnotesize
\begin{center}
\begin{longtable}{lccclcrcccr}
\caption[Residue-specific results for positive selection analys in tortoises]{Results of the positive selected sites in the positive selected genes, including their \textsl{equivalent} in human, and their status in Aldabra giant tortoises (where \quotes{Conserved} reffers to its status in Gal\'{a}pagos giant tortoises.}\\
\hline \hline
Gen & & Residue & & Contig & & Position & & Human \textsl{eq.} & & Status in \textit{A. gigantea} \\
\hline \hline
\endfirsthead
\multicolumn{11}{c}{\tablename\ \thetable\ -- \textit{Continued from previous page}} \\
\hline
Gen & & Residue & & Contig & & Position & & Human \textsl{eq.} & & Status in \textit{A. gigantea} \\
\hline \hline
\endhead
\hline
\multicolumn{11}{c}{\tablename\ \thetable\ -- \textit{Continues on next page}} \\
\endfoot
\hline \hline
\endlastfoot
BCL2A1 & & (-113) & & Contig989 & & 18520 & & & & Conserved \\
BCL2A1 & & (K102) & & Contig989 & & 18553 & & K102K & & Conserved \\
BCL2A1 & & (K146) & & Contig989 & & 16839 & & K146T & & Conserved \\
BCL2A1 & & (L99) & & Contig989 & & 18562 & & L99I & & Conserved \\
BCL2A1 & & (N129) & & Contig989 & & 18472 & & & & Conserved \\
BCL2A1 & & (Q116) & & Contig989 & & 18511 & & & & Conserved \\
BAG2 & & (A94) & & Contig1585 & & 74920 & & A131Y & & Conserved \\
BAG2 & & (G52) & & Contig1585 & & 75046 & & G89D & & Mutated to G \\
BAG2 & & (H156) & & Contig1585 & & 74734 & & H193R & & Conserved \\
BAG2 & & (I144) & & Contig1585 & & 74770 & & I181L & & Conserved \\
BAG2 & & (N93) & & Contig1585 & & 74923 & & N130G & & Conserved \\
BAG2 & & (Q116) & & Contig1585 & & 74854 & & Q153H & & Mutated to Q \\
BAG2 & & (T56) & & Contig1585 & & 75034 & & T93S & & Conserved \\
CCKAR & & (A304) & & Contig623 & & 335179 & & A303V & & Conserved \\
CCKAR & & (E403) & & Contig623 & & 335476 & & & & Conserved \\
CCKAR & & (S210) & & Contig623 & & 334255 & & S208E & & Conserved \\
CCKAR & & (W211) & & Contig623 & & 334258 & & W209R & & Conserved \\
CLRN2 & & (F189) & & Contig471 & & 332683 & & F189V & & Mutated to *,Q \\
CLRN2 & & (G146) & & Contig471 & & 332812 & & G146S & & Mutated to P,S \\
CLRN2 & & (I208) & & Contig471 & & 332626 & & I208V & & Conserved \\
CLRN2 & & (I22) & & Contig471 & & 337663 & & & & Conserved \\
CLRN2 & & (K217) & & Contig471 & & 332599 & & K217R & & Conserved \\
CLRN2 & & (L107) & & Contig471 & & 333408 & & L107G & & Conserved \\
CLRN2 & & (P212) & & Contig471 & & 332614 & & P212R & & Conserved \\
CLRN2 & & (S14) & & Contig471 & & 337687 & & S14A & & Conserved \\
CLRN2 & & (V90) & & Contig471 & & 333459 & & V90M & & Mutated to H \\
CLRN2 & & (W9) & & Contig471 & & 337699 & & W9F & & Mutated to N \\
COX18 & & (E57) & & Contig2388 & & 18753 & & E241Q & & Conserved \\
COX18 & & (F147) & & Contig2388 & & 20469 & & & & Conserved \\
COX18 & & (F148) & & Contig2388 & & 20472 & & & & Conserved \\
COX18 & & (I82) & & Contig2388 & & 18828 & & & & Conserved \\
COX18 & & (I85) & & Contig2388 & & 18837 & & & & Conserved \\
COX18 & & (R123) & & Contig2388 & & 20397 & & & & Conserved \\
COX18 & & (V56) & & Contig2388 & & 18750 & & V240L & & Conserved \\
CREBL2 & & (-100) & & Contig520 & & 637897 & & Q101H & & Mutated to V \\
CREBL2 & & (-106) & & Contig520 & & 637879 & & & & Conserved \\
CREBL2 & & (-99) & & Contig520 & & 637900 & & & & Conserved \\
CRLS1 & & (A109) & & Contig1626 & & 302674 & & & & Conserved \\
CRLS1 & & (I126) & & Contig1626 & & 302725 & & I241V & & Conserved \\
CRLS1 & & (G110) & & Contig1626 & & 302677 & & A224G & & Conserved \\
CRLS1 & & (L108) & & Contig1626 & & 302671 & & L223V & & Conserved \\
CRLS1 & & (L34) & & Contig1626 & & 297486 & & & & Conserved \\
CRLS1 & & (V77) & & Contig1626 & & 302042 & & & & Conserved \\
EMC2 & & (I53) & & Contig465 & & 1306819 & & I54V & & Mutated to I \\
EMC2 & & (R95) & & Contig465 & & 1312717 & & R96K & & Conserved \\
EMC2 & & (T183) & & Contig465 & & 1338091 & & T184A & & Conserved \\
EMC2 & & (Y255) & & Contig465 & & 1341115 & & Y256F & & Conserved \\
EMC2 & & (Y269) & & Contig465 & & 1341157 & & & & Conserved \\
ERP27 & & (D127) & & Contig2026 & & 58280 & & D250S & & Conserved \\
ERP27 & & (E108) & & Contig2026 & & 58223 & & E231Q & & Conserved \\
ERP27 & & (H121) & & Contig2026 & & 58262 & & & & Conserved \\
ERP27 & & (K136) & & Contig2026 & & 58307 & & K259I & & Conserved \\
ERP27 & & (S131) & & Contig2026 & & 58292 & & S254K & & Conserved \\
ERP27 & & (T7) & & Contig2026 & & 47324 & & T130A & & Conserved \\
ERP27 & & (V27) & & Contig2026 & & 47381 & & V150L & & Conserved \\
FAM69C & & (E282) & & Contig976 & & 489334 & & E413Q & & Conserved \\
FAM69C & & (G36) & & Contig976 & & 498104 & & G169T & & Heterozygous \\
FAM69C & & (G44) & & Contig976 & & 498080 & & G177S & & Conserved \\
FAM69C & & (P78) & & Contig976 & & 497978 & & P211Q & & Conserved \\
FAM69C & & (S33) & & Contig976 & & 498113 & & S166T & & Conserved \\
AHSG & & (-317) & & Contig54 & & 2421121 & & & & Conserved \\
AHSG & & (D203) & & Contig54 & & 2418218 & & D208T & & Conserved \\
AHSG & & (E221) & & Contig54 & & 2418272 & & & & Mutated to K \\
AHSG & & (G284) & & Contig54 & & 2421022 & & & & Conserved \\
AHSG & & (H335) & & Contig54 & & 2421175 & & H365Y & & Conserved \\
AHSG & & (I42) & & Contig54 & & 2411438 & & I45V & & Conserved \\
AHSG & & (K121) & & Contig54 & & 2415816 & & K124R & & Conserved \\
AHSG & & (K128) & & Contig54 & & 2415837 & & K131Q & & Conserved \\
AHSG & & (L8) & & Contig54 & & 2411324 & & L8I & & Conserved \\
AHSG & & (N175) & & Contig54 & & 2417838 & & N180F & & Conserved \\
AHSG & & (S306) & & Contig54 & & 2421100 & & & & Conserved \\
AHSG & & (T92) & & Contig54 & & 2413074 & & T95V & & Mutated to L \\
AHSG & & (V107) & & Contig54 & & 2415774 & & V110I & & Mutated to V \\
AHSG & & (V139) & & Contig54 & & 2417730 & & V146I & & Conserved \\
AHSG & & (V199) & & Contig54 & & 2418206 & & V204I & & Conserved \\
AHSG & & (V285) & & Contig54 & & 2421037 & & & & Conserved \\
AHSG & & (V5) & & Contig54 & & 2411315 & & V5I & & Conserved \\
FGF19 & & (E15) & & Contig4856 & & 79636 & & E117A & & Conserved \\
FGF19 & & (E72) & & Contig4856 & & 79807 & & E174I & & Mutated to V \\
FGF19 & & (M91) & & Contig4856 & & 79864 & & M187V & & Conserved \\
FGF19 & & (S14) & & Contig4856 & & 79633 & & S116A & & Conserved \\
FRRS1L & & (S85) & & Contig1385 & & 415653 & & S289K & & Conserved \\
GDPD1 & & (E25) & & Contig2053 & & 522028 & & E81Q & & Conserved \\
GDPD1 & & (N101) & & Contig2053 & & 519402 & & N157S & & Conserved \\
GDPD1 & & (N126) & & Contig2053 & & 517280 & & N182S & & Mutated to L \\
GDPD1 & & (S191) & & Contig2053 & & 513811 & & S247R & & Conserved \\
GDPD1 & & (V43) & & Contig2053 & & 521974 & & V99I & & Mutated to Y \\
GPR39 & & (S213) & & Contig1955 & & 248729 & & S214A & & Conserved \\
GTPBP10 & & (A44) & & Contig401 & & 99027 & & & & Conserved \\
GTPBP10 & & (E238) & & Contig401 & & 116152 & & E267D & & Conserved \\
GTPBP10 & & (F151) & & Contig401 & & 108563 & & & & Conserved \\
GTPBP10 & & (G41) & & Contig401 & & 99018 & & & & Conserved \\
GTPBP10 & & (I225) & & Contig401 & & 113162 & & I254V & & Conserved \\
HRH1 & & (-202) & & Contig1259 & & 121479 & & & & Conserved \\
HRH1 & & (-209) & & Contig1259 & & 121500 & & & & Conserved \\
HRH1 & & (H265) & & Contig1259 & & 121704 & & H309K & & Conserved \\
HRH1 & & (I78) & & Contig1259 & & 121104 & & I123L & & Conserved \\
HRH1 & & (K221) & & Contig1259 & & 121569 & & & & Mutated to N \\
HRH1 & & (N121) & & Contig1259 & & 121233 & & N166R & & Conserved \\
HRH1 & & (V18) & & Contig1259 & & 120918 & & V61D & & Heterozygous \\
HSPA14 & & (N30) & & Contig455 & & 1023422 & & N153H & & Conserved \\
HSPA14 & & (V13) & & Contig455 & & 1023371 & & A136A & & Conserved \\
IL20RA & & (-307) & & Contig11 & & 1428874 & & & & Conserved \\
IL20RA & & (D370) & & Contig11 & & 1429087 & & & & Conserved \\
IL20RA & & (D473) & & Contig11 & & 1429444 & & D528N & & Conserved \\
IL20RA & & (E421) & & Contig11 & & 1429273 & & E473G & & Mutated to E \\
IL20RA & & (E496) & & Contig11 & & 1429516 & & E552G & & Conserved \\
IL20RA & & (G374) & & Contig11 & & 1429099 & & G413V & & Conserved \\
IL20RA & & (G490) & & Contig11 & & 1429498 & & G546E & & Conserved \\
IL20RA & & (V493) & & Contig11 & & 1429507 & & V549I & & Conserved \\
IRAK1BP1 & & (A58) & & Contig331 & & 1108671 & & V167I & & Conserved \\
IRAK1BP1 & & (D115) & & Contig331 & & 1107447 & & S225N & & Conserved \\
IRAK1BP1 & & (D143) & & Contig331 & & 1107363 & & K253Q & & Conserved \\
IRAK1BP1 & & (G142) & & Contig331 & & 1107366 & & G252R & & Conserved \\
IRAK1BP1 & & (I45) & & Contig331 & & 1108710 & & V154T & & Conserved \\
IRAK1BP1 & & (V37) & & Contig331 & & 1108734 & & V146I & & Conserved \\
IL1R2 & & (R227) & & Contig315 & & 1381393 & & R295Y & & Mutated to H \\
IL1R2 & & (W205) & & Contig315 & & 1381327 & & W273T & & Mutated to M \\
ITM2B & & (A49) & & Contig2350 & & 230502 & & A105G & & Conserved \\
ITM2B & & (I181) & & Contig2350 & & 236814 & & I237L & & Conserved \\
ITM2B & & (K96) & & Contig2350 & & 233143 & & & & Conserved \\
ITM2B & & (V148) & & Contig2350 & & 236715 & & V204I & & Conserved \\
KCNK18 & & (-208) & & Contig172 & & 2027910 & & & & Mutated to G \\
KCNK18 & & (F309) & & Contig172 & & 2027613 & & F303V & & Mutated to F \\
KCNK18 & & (F97) & & Contig172 & & 2034818 & & F95L & & Conserved \\
KCNK18 & & (K373) & & Contig172 & & 2027421 & & K367R & & Conserved \\
KDSR & & (I136) & & Contig295 & & 233996 & & A276V & & Conserved \\
KDSR & & (Q120) & & Contig295 & & 234044 & & & & Conserved \\
KDSR & & (S146) & & Contig295 & & 233966 & & S286T & & Conserved \\
MVK & & (A136) & & Contig593 & & 589742 & & A141T & & Mutated to A \\
MVK & & (D165) & & Contig593 & & 589655 & & D170T & & Conserved \\
MVK & & (D95) & & Contig593 & & 590372 & & D100E & & Conserved \\
MVK & & (G244) & & Contig593 & & 576336 & & G249S & & Conserved \\
MVK & & (H22) & & Contig593 & & 591616 & & H24Y & & Conserved \\
MVK & & (I216) & & Contig593 & & 578751 & & I221F & & Conserved \\
MVK & & (L163) & & Contig593 & & 589661 & & L168V & & Conserved \\
MVK & & (L177) & & Contig593 & & 580412 & & L182M & & Conserved \\
MVK & & (T173) & & Contig593 & & 580424 & & T178S & & Conserved \\
MVK & & (T99) & & Contig593 & & 590360 & & T104A & & Conserved \\
MALSU1 & & (A86) & & Contig12 & & 3995739 & & A204V & & Conserved \\
MALSU1 & & (L17) & & Contig12 & & 4003223 & & L135I & & Conserved \\
CMAS & & (A190) & & Contig409 & & 364190 & & A352Q & & Conserved \\
CMAS & & (C260) & & Contig409 & & 364934 & & & & Conserved \\
CMAS & & (G26) & & Contig409 & & 358568 & & G186T & & Conserved \\
CMAS & & (G68) & & Contig409 & & 358694 & & G228N & & Conserved \\
CMAS & & (I259) & & Contig409 & & 364931 & & I421V & & Conserved \\
CMAS & & (K220) & & Contig409 & & 364814 & & K382R & & Conserved \\
CMAS & & (L175) & & Contig409 & & 364145 & & L334I & & Conserved \\
CMAS & & (R249) & & Contig409 & & 364901 & & R411H & & Conserved \\
CMAS & & (T171) & & Contig409 & & 364133 & & T333A & & Mutated to I \\
CMAS & & (V192) & & Contig409 & & 364196 & & V354I & & Conserved \\
NTF3 & & (D57) & & Contig636 & & 963965 & & & & Conserved \\
NTF3 & & (E67) & & Contig636 & & 963995 & & E80G & & Mutated to E \\
NTF3 & & (Q96) & & Contig636 & & 964082 & & Q109R & & Conserved \\
NTF3 & & (T48) & & Contig636 & & 963938 & & L61F & & Mutated to L \\
F2R & & (L157) & & Contig1017 & & 589497 & & L216S & & Conserved \\
PTCD2 & & (D102) & & Contig888 & & 45273 & & D144G & & Conserved \\
PTCD2 & & (E159) & & Contig888 & & 37994 & & D201E & & Conserved \\
PTCD2 & & (F156) & & Contig888 & & 38003 & & F198V & & Mutated to I \\
PTCD2 & & (I154) & & Contig888 & & 38009 & & & & Conserved \\
PTCD2 & & (K190) & & Contig888 & & 34556 & & K232T & & Conserved \\
PTCD2 & & (L42) & & Contig888 & & 46085 & & L84M & & Conserved \\
PTCD2 & & (L68) & & Contig888 & & 46007 & & & & Conserved \\
PTCD2 & & (Q188) & & Contig888 & & 34562 & & L230H & & Mutated to Q \\
PTCD2 & & (Q61) & & Contig888 & & 46028 & & E103K & & Conserved \\
SGPP2 & & (-175) & & Contig53 & & 792630 & & & & Conserved \\
SGPP2 & & (-178) & & Contig53 & & 792639 & & & & Conserved \\
SGPP2 & & (A234) & & Contig53 & & 792816 & & & & Conserved \\
SGPP2 & & (C118) & & Contig53 & & 792459 & & C241R & & Conserved \\
SGPP2 & & (E233) & & Contig53 & & 792813 & & & & Conserved \\
SGPP2 & & (E36) & & Contig53 & & 777142 & & E159D & & Conserved \\
SGPP2 & & (I116) & & Contig53 & & 792453 & & I239V & & Mutated to I \\
SGPP2 & & (K31) & & Contig53 & & 777127 & & K154V & & Mutated to M \\
SGPP2 & & (L216) & & Contig53 & & 792762 & & & & Conserved \\
SGPP2 & & (P185) & & Contig53 & & 792660 & & & & Conserved \\
SGPP2 & & (T229) & & Contig53 & & 792801 & & & & Conserved \\
SGPP2 & & (V107) & & Contig53 & & 792426 & & V230I & & Conserved \\
SGPP2 & & (V3) & & Contig53 & & 777046 & & & & Conserved \\
SRA1 & & (E11) & & Contig498 & & 530830 & & & & Mutated to T \\
SRA1 & & (H146) & & Contig498 & & 533764 & & & & Conserved \\
SRA1 & & (L103) & & Contig498 & & 533245 & & & & Conserved \\
TUBE1 & & (E94) & & Contig2794 & & 74108 & & E169D & & Conserved \\
TUBE1 & & (I111) & & Contig2794 & & 74159 & & I186V & & Conserved \\
TMEM38A & & (A114) & & Contig2922 & & 57828 & & V159I & & Conserved \\
TMEM38A & & (D254) & & Contig2922 & & 59654 & & D299Q & & Conserved \\
TMEM38A & & (I88) & & Contig2922 & & 56328 & & I134I & & Conserved \\
TMEM38A & & (L135) & & Contig2922 & & 57891 & & L181I & & Conserved \\
TMEM38A & & (V108) & & Contig2922 & & 56388 & & V154I & & Conserved \\
VPS35 & & (E763) & & Contig1555 & & 330070 & & E792D & & Conserved \\
VPS35 & & (G664) & & Contig1555 & & 332054 & & G693T & & Conserved \\
VPS35 & & (I767) & & Contig1555 & & 330058 & & & & Conserved \\
WDR27 & & (G465) & & Contig131 & & 944368 & & & & Conserved \\
\label{app_t_site_positive_selection}
\end{longtable}
\end{center}