From c7d4abc86bd2e14a5241acc6761f96c8ffc7dcff Mon Sep 17 00:00:00 2001 From: Flavjack Date: Sun, 25 Apr 2021 11:27:01 +0200 Subject: [PATCH] test R-checks --- .github/workflows/R-CMD-check.yaml | 61 ++++++++++-------------------- README.Rmd | 3 +- README.md | 5 +-- docs/index.html | 3 +- docs/pkgdown.yml | 2 +- 5 files changed, 24 insertions(+), 50 deletions(-) diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml index fb4fc500..fb7b3702 100644 --- a/.github/workflows/R-CMD-check.yaml +++ b/.github/workflows/R-CMD-check.yaml @@ -1,7 +1,3 @@ -# NOTE: This workflow is overkill for most R packages -# check-standard.yaml is likely a better choice -# usethis::use_github_action("check-standard") will install it. -# # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions on: @@ -26,17 +22,13 @@ jobs: fail-fast: false matrix: config: - - {os: macOS-latest, r: 'release'} - {os: windows-latest, r: 'release'} - - {os: windows-latest, r: '3.6'} - - {os: ubuntu-18.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } - - {os: ubuntu-18.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} - - {os: ubuntu-18.04, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} - - {os: ubuntu-18.04, r: '3.5', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} - - {os: ubuntu-18.04, r: '3.4', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} - - {os: ubuntu-18.04, r: '3.3', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"} + - {os: macOS-latest, r: 'release'} + - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} + - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} env: + R_REMOTES_NO_ERRORS_FROM_WARNINGS: true RSPM: ${{ matrix.config.rspm }} GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} @@ -44,64 +36,51 @@ jobs: - uses: actions/checkout@v2 - uses: r-lib/actions/setup-r@v1 - id: install-r with: r-version: ${{ matrix.config.r }} - http-user-agent: ${{ matrix.config.http-user-agent }} - uses: r-lib/actions/setup-pandoc@v1 - - name: Install pak and query dependencies + - name: Query dependencies run: | - install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/") - saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds") + install.packages('remotes') + saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) + writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") shell: Rscript {0} - name: Restore R package cache + if: runner.os != 'Windows' uses: actions/cache@v2 with: - path: | - ${{ env.R_LIBS_USER }}/* - !${{ env.R_LIBS_USER }}/pak - key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }} - restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1- + path: ${{ env.R_LIBS_USER }} + key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} + restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- - name: Install system dependencies if: runner.os == 'Linux' run: | - pak::local_system_requirements(execute = TRUE) - pak::pkg_system_requirements("rcmdcheck", execute = TRUE) - shell: Rscript {0} + while read -r cmd + do + eval sudo $cmd + done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') - name: Install dependencies run: | - pak::local_install_dev_deps(upgrade = TRUE) - pak::pkg_install("rcmdcheck") - shell: Rscript {0} - - - name: Session info - run: | - options(width = 100) - pkgs <- installed.packages()[, "Package"] - sessioninfo::session_info(pkgs, include_base = TRUE) + remotes::install_deps(dependencies = TRUE) + remotes::install_cran("rcmdcheck") shell: Rscript {0} - name: Check env: - _R_CHECK_CRAN_INCOMING_: false + _R_CHECK_CRAN_INCOMING_REMOTE_: false run: | options(crayon.enabled = TRUE) rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check") shell: Rscript {0} - - name: Show testthat output - if: always() - run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true - shell: bash - - name: Upload check results if: failure() uses: actions/upload-artifact@main with: - name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results + name: ${{ runner.os }}-r${{ matrix.config.r }}-results path: check diff --git a/README.Rmd b/README.Rmd index 1b7412ec..f6176115 100644 --- a/README.Rmd +++ b/README.Rmd @@ -18,8 +18,7 @@ knitr::opts_chunk$set( [![CRAN status](https://www.r-pkg.org/badges/version/inti)](https://CRAN.R-project.org/package=inti) [![DOI](https://zenodo.org/badge/82401374.svg)](https://zenodo.org/badge/latestdoi/82401374) -[![Travis build status](https://travis-ci.org/Flavjack/inti.svg?branch=master)](https://travis-ci.org/Flavjack/inti) -[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/Flavjack/inti?branch=master&svg=true)](https://ci.appveyor.com/project/Flavjack/inti) +[![R-CMD-check](https://github.com/Flavjack/inti/workflows/R-CMD-check/badge.svg)](https://github.com/Flavjack/inti/actions) [![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/inti?color=brightgreen)](https://r-pkg.org/pkg/inti) diff --git a/README.md b/README.md index 25973db0..d7bddd54 100644 --- a/README.md +++ b/README.md @@ -8,10 +8,7 @@ [![CRAN status](https://www.r-pkg.org/badges/version/inti)](https://CRAN.R-project.org/package=inti) [![DOI](https://zenodo.org/badge/82401374.svg)](https://zenodo.org/badge/latestdoi/82401374) -[![Travis build -status](https://travis-ci.org/Flavjack/inti.svg?branch=master)](https://travis-ci.org/Flavjack/inti) -[![AppVeyor build -status](https://ci.appveyor.com/api/projects/status/github/Flavjack/inti?branch=master&svg=true)](https://ci.appveyor.com/project/Flavjack/inti) +[![R-CMD-check](https://github.com/Flavjack/inti/workflows/R-CMD-check/badge.svg)](https://github.com/Flavjack/inti/actions) [![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/inti?color=brightgreen)](https://r-pkg.org/pkg/inti) diff --git a/docs/index.html b/docs/index.html index f19eb850..b7d25313 100644 --- a/docs/index.html +++ b/docs/index.html @@ -224,8 +224,7 @@

Dev status

diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 7282e903..0c237182 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -6,7 +6,7 @@ articles: heritability: heritability.html policy: policy.html yupana: yupana.html -last_built: 2021-04-25T08:41Z +last_built: 2021-04-25T09:25Z urls: reference: https://inkaverse.com//reference article: https://inkaverse.com//articles