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python setup.py install error #7

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Sa-Hf opened this issue Aug 3, 2022 · 1 comment
Open

python setup.py install error #7

Sa-Hf opened this issue Aug 3, 2022 · 1 comment

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@Sa-Hf
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Sa-Hf commented Aug 3, 2022

Hello,
Thanks for your wonderfull tool! I met with the following error during the installation process.How do I fix this.Thank you very much.
##my code
conda create -n dlohic2 python=3.9
conda activate dlohic2
conda install --yes numpy scipy matplotlib pandas cython h5py jsonschema graphviz
conda install -c bioconda --yes coreutils bwa samtools mafft pairix tabix cooler pysam java-jdk
conda install -c conda-forge --yes bzip2
git clone https://github.com/Nanguage/DLO-HiC-Tools.git
cd DLO-HiC-Tools/
python setup.py install

###error information

Traceback (most recent call last):.
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ParseTreeTransforms.py", line 2239, in visit_FuncDefNode
node.body = node.body.analyse_expressions(node.local_scope)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in analyse_expressions
self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in
self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6334, in analyse_expressions
self.body = self.body.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6705, in analyse_expressions
self.item = self.item.coerce_to(self.target.type, env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 952, in coerce_to
src = PyTypeTestNode(src, dst_type, env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 13022, in init
assert dst_type.is_extension_type or dst_type.is_builtin_type, "PyTypeTest on non extension type"
AssertionError: PyTypeTest on non extension type

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 156, in save_modules
yield saved
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 198, in setup_context
yield
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 259, in run_setup
_execfile(setup_script, ns)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 46, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-b1ryd0fz/datrie-0.8.2/setup.py", line 39, in

File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1127, in cythonize
cythonize_one(*args)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1233, in cythonize_one
result = compile_single(pyx_file, options, full_module_name=full_module_name)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 727, in compile_single
return run_pipeline(source, options, full_module_name)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 515, in run_pipeline
err, enddata = Pipeline.run_pipeline(pipeline, source)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 355, in run_pipeline
data = run(phase, data)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 335, in run
return phase(data)
File "Cython/Compiler/Visitor.py", line 302, in Cython.Compiler.Visitor.CythonTransform.call
File "Cython/Compiler/Visitor.py", line 284, in Cython.Compiler.Visitor.VisitorTransform.call
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ParseTreeTransforms.py", line 2234, in visit_ModuleNode
self.visitchildren(node)
File "Cython/Compiler/Visitor.py", line 247, in Cython.Compiler.Visitor.VisitorTransform.visitchildren
File "Cython/Compiler/Visitor.py", line 251, in Cython.Compiler.Visitor.VisitorTransform.visitchildren
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 221, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 221, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 188, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 148, in Cython.Compiler.Visitor.TreeVisitor._raise_compiler_error
Cython.Compiler.Errors.CompilerCrash:
Error compiling Cython file:

...

def __dealloc__(self):
    if self._c_trie is not NULL:
        cdatrie.trie_free(self._c_trie)

def update(self, other=(), **kwargs):

^

src/datrie.pyx:77:4: Compiler crash in AnalyseExpressionsTransform

ModuleNode.body = StatListNode(datrie.pyx:6:0)
StatListNode.stats[12] = StatListNode(datrie.pyx:37:5)
StatListNode.stats[0] = CClassDefNode(datrie.pyx:37:5,
as_name = 'BaseTrie',
class_name = 'BaseTrie',
doc = "\n Wrapper for libdatrie's trie.\n\n Keys are unicode strings, values are integers -2147483648 <= x <= 2147483647.\n ",
module_name = '',
visibility = 'private')
CClassDefNode.body = StatListNode(datrie.pyx:38:4)
StatListNode.stats[2] = DefNode(datrie.pyx:77:4,
modifiers = [...]/0,
name = 'update',
np_args_idx = [...]/0,
num_required_args = 1,
outer_attrs = [...]/2,
py_wrapper_required = True,
reqd_kw_flags_cname = '0',
used = True)

Compiler crash traceback from this point on:
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ParseTreeTransforms.py", line 2239, in visit_FuncDefNode
node.body = node.body.analyse_expressions(node.local_scope)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in analyse_expressions
self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in
self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6334, in analyse_expressions
self.body = self.body.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in
self.stats = [stat.analyse_expressions(env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6705, in analyse_expressions
self.item = self.item.coerce_to(self.target.type, env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 952, in coerce_to
src = PyTypeTestNode(src, dst_type, env)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 13022, in init
assert dst_type.is_extension_type or dst_type.is_builtin_type, "PyTypeTest on non extension type"
AssertionError: PyTypeTest on non extension type

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File "/home/ywzhang/soft/DLO_Hic/DLO-HiC-Tools/setup.py", line 54, in
setup(
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/init.py", line 87, in setup
return distutils.core.setup(**attrs)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 973, in run_commands
self.run_command(cmd)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command
super().run_command(command)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 992, in run_command
cmd_obj.run()
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/install.py", line 74, in run
self.do_egg_install()
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/install.py", line 131, in do_egg_install
cmd.run(show_deprecation=False)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 420, in run
self.easy_install(spec, not self.no_deps)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 662, in easy_install
return self.install_item(None, spec, tmpdir, deps, True)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 709, in install_item
self.process_distribution(spec, dist, deps)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 754, in process_distribution
distros = WorkingSet([]).resolve(
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/pkg_resources/init.py", line 789, in resolve
dist = best[req.key] = env.best_match(
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/pkg_resources/init.py", line 1075, in best_match
return self.obtain(req, installer)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/pkg_resources/init.py", line 1087, in obtain
return installer(requirement)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 681, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 707, in install_item
dists = self.install_eggs(spec, download, tmpdir)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 900, in install_eggs
return self.build_and_install(setup_script, setup_base)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 1174, in build_and_install
self.run_setup(setup_script, setup_base, args)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/command/easy_install.py", line 1158, in run_setup
run_setup(setup_script, args)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 262, in run_setup
raise
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/contextlib.py", line 137, in exit
self.gen.throw(typ, value, traceback)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 198, in setup_context
yield
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/contextlib.py", line 137, in exit
self.gen.throw(typ, value, traceback)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 169, in save_modules
saved_exc.resume()
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 143, in resume
raise exc.with_traceback(self._tb)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 156, in save_modules
yield saved
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 198, in setup_context
yield
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 259, in run_setup
_execfile(setup_script, ns)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/setuptools/sandbox.py", line 46, in _execfile
exec(code, globals, locals)
File "/tmp/easy_install-b1ryd0fz/datrie-0.8.2/setup.py", line 39, in

File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1127, in cythonize
cythonize_one(*args)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1233, in cythonize_one
result = compile_single(pyx_file, options, full_module_name=full_module_name)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 727, in compile_single
return run_pipeline(source, options, full_module_name)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Main.py", line 515, in run_pipeline
err, enddata = Pipeline.run_pipeline(pipeline, source)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 355, in run_pipeline
data = run(phase, data)
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Pipeline.py", line 335, in run
return phase(data)
File "Cython/Compiler/Visitor.py", line 302, in Cython.Compiler.Visitor.CythonTransform.call
File "Cython/Compiler/Visitor.py", line 284, in Cython.Compiler.Visitor.VisitorTransform.call
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ParseTreeTransforms.py", line 2234, in visit_ModuleNode
self.visitchildren(node)
File "Cython/Compiler/Visitor.py", line 247, in Cython.Compiler.Visitor.VisitorTransform.visitchildren
File "Cython/Compiler/Visitor.py", line 251, in Cython.Compiler.Visitor.VisitorTransform.visitchildren
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 221, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 221, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 182, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 312, in Cython.Compiler.Visitor.CythonTransform.visit_Node
File "Cython/Compiler/Visitor.py", line 260, in Cython.Compiler.Visitor.VisitorTransform._process_children
File "Cython/Compiler/Visitor.py", line 219, in Cython.Compiler.Visitor.TreeVisitor._visitchildren
File "Cython/Compiler/Visitor.py", line 193, in Cython.Compiler.Visitor.TreeVisitor._visitchild
File "Cython/Compiler/Visitor.py", line 188, in Cython.Compiler.Visitor.TreeVisitor._visit
File "Cython/Compiler/Visitor.py", line 148, in Cython.Compiler.Visitor.TreeVisitor._raise_compiler_error
setuptools.sandbox.UnpickleableException: CompilerCrash((FileSourceDescriptor:/tmp/easy_install-b1ryd0fz/datrie-0.8.2/src/datrie.pyx, 77, 4), 'AnalyseExpressionsTransform', 'Compiler crash in AnalyseExpressionsTransform\n\nModuleNode.body = StatListNode(datrie.pyx:6:0)\nStatListNode.stats[12] = StatListNode(datrie.pyx:37:5)\nStatListNode.stats[0] = CClassDefNode(datrie.pyx:37:5,\n as_name = 'BaseTrie',\n class_name = 'BaseTrie',\n doc = "\n Wrapper for libdatrie's trie.\n\n Keys are unicode strings, values are integers -2147483648 <= x <= 2147483647.\n ",\n module_name = '',\n visibility = 'private')\nCClassDefNode.body = StatListNode(datrie.pyx:38:4)\nStatListNode.stats[2] = DefNode(datrie.pyx:77:4,\n modifiers = [...]/0,\n name = 'update',\n np_args_idx = [...]/0,\n num_required_args = 1,\n outer_attrs = [...]/2,\n py_wrapper_required = True,\n reqd_kw_flags_cname = '0',\n used = True)\n\nCompiler crash traceback from this point on:\n File "Cython/Compiler/Visitor.py", line 180, in Cython.Compiler.Visitor.TreeVisitor._visit\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ParseTreeTransforms.py", line 2239, in visit_FuncDefNode\n node.body = node.body.analyse_expressions(node.local_scope)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions\n self.stats = [stat.analyse_expressions(env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in \n self.stats = [stat.analyse_expressions(env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in analyse_expressions\n self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6268, in \n self.if_clauses = [if_clause.analyse_expressions(env) for if_clause in self.if_clauses]\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6334, in analyse_expressions\n self.body = self.body.analyse_expressions(env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in analyse_expressions\n self.stats = [stat.analyse_expressions(env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 435, in \n self.stats = [stat.analyse_expressions(env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/Nodes.py", line 6705, in analyse_expressions\n self.item = self.item.coerce_to(self.target.type, env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 952, in coerce_to\n src = PyTypeTestNode(src, dst_type, env)\n File "/home/ywzhang/anaconda3/envs/dlohic2/lib/python3.9/site-packages/Cython/Compiler/ExprNodes.py", line 13022, in init\n assert dst_type.is_extension_type or dst_type.is_builtin_type, "PyTypeTest on non extension type"\nAssertionError: PyTypeTest on non extension type', AssertionError('PyTypeTest on non extension type'), <traceback object at 0x7f1809f4b7c0>)
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Nanguage commented Nov 2, 2022

This has been solved, see the new install instructions in README.

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