| When | What | Who |
|---|---|---|
| 09:00-10:00 | Lecture: Overview of different single-cell platforms and assays | Susan Kloet |
| 10:00-10:15 | break | |
| 10:15-11:15 | Lecture: scRNA-seq platforms | Miao-Ping Chien |
| 11:15-12:00 | Lecture: Preprocessing | Susan Kloet |
| 12:00-13:30 | lunch + introductions | |
| 13:30-14:30 | Lecture: Dimensionality reduction | Marcel Reinders |
| 14:30-14:45 | break | |
| 14:45-16:15 | Practical: Dimensionality reduction | TAs |
| When | What | Who |
|---|---|---|
| 09:00-10:00 | Lecture: Single-cell multi-omics | Miao-Ping Chien |
| 10:00-10:15 | break | |
| 10:15-11:00 | Lecture: Experimental design & sample preparation | Susan Kloet |
| 11:00-12:00 | Lecture: Quality control and normalization | Ahmed Mahfouz |
| 12:00-13:00 | lunch | |
| 13:00-14:30 | Practical: Quality control and normalization | TAs |
| 14:30-14:45 | break | |
| 14:45-15:45 | Lecture: Clustering and cell annotation | Lieke Michielsen |
| 15:45-16:00 | break | |
| 16:00-17:00 | Online Lecture: scNL symposium | Stefania Giacomello |
| When | What | Who |
|---|---|---|
| 09:00-10:00 | Lecture: Data integration | Tamim Abdelaal |
| 10:00-10:15 | break | |
| 10:15-11:15 | Practical: Data integration | TAs |
| 11:15-12:00 | Practical: Clustering and cell annotation | TAs |
| 12:00-13:00 | lunch | |
| 13:00-14:00 | Lecture: Differential expression analysis | Ahmed Mahfouz |
| 14:00-14:15 | break | |
| 14:15-15:45 | Practical: Differential expression analysis | TAs |
| 15:45-16:00 | break | |
| 16:00-17:00 | Lecture: Trajectory inference | Ahmed Mahfouz |
| When | What | Who |
|---|---|---|
| 09:00-10:00 | Lecture: Spatial transcriptomics | Laura Heezen |
| 10:00-10:15 | break | |
| 10:15-11:15 | Practical: Trajectory inference | TAs |
| 11:15-12:00 | Practical: Spatial transcriptomics | TAs |
| 12:00-13:00 | lunch | |
| 13:00-14:00 | Mini Symposium (Dr. Anna Alemany) | |
| 14:00-15:00 | Mini Symposium (Dr. Vincent van Unen) |