diff --git a/src/cnv_germline_tagging.py b/src/cnv_germline_tagging.py index 5af3b5b..321de0d 100644 --- a/src/cnv_germline_tagging.py +++ b/src/cnv_germline_tagging.py @@ -149,7 +149,7 @@ def get_cnv_purity(args): args.verdict = args.verdict if args.verdict else entry_path - if args.output_dir is not None and os.path.exists(args.output_dir): + if args.output_dir is not None and not os.path.exists(args.output_dir): subprocess.run(f'mkdir -p {args.output_dir}', shell=True) tac_command = tumor_allele_counter_command(args)