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NEWS
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# CHANGES IN VERSION 0.98.18
## SIGNIFICANT USER-VISIBLE CHANGES
* Bug fix https://github.com/HegemanLab/w4mclassfilter/issues/8 - "centroid and median computation fails for some inputs"
## INTERNAL CHANGES
* Built with R 3.6.2 (2019-12-12) "Dark and Stormy Night"
* Built with the command `R CMD build w4mclassfilter` to assure that vignettes are built as intended.
# CHANGES IN VERSION 0.98.17
## SIGNIFICANT USER-VISIBLE CHANGES
* Enhancement https://github.com/HegemanLab/w4mclassfilter/issues/7 - "enable sorting on multiple columns of metadata"
## INTERNAL CHANGES
* Built with R 3.6.2 (2019-12-12) "Dark and Stormy Night"
* Built with the command `R CMD build w4mclassfilter` to assure that vignettes are built as intended.
# CHANGES IN VERSION 0.98.16
## SIGNIFICANT USER-VISIBLE CHANGES
* None (apart from documentation changes).
## INTERNAL CHANGES
* Corrected internal calculation of medoids (to use principal-component scores as coordinates for distance calculations). See https://github.com/HegemanLab/w4mclassfilter/issues/6#issuecomment-566770411 for details.
# CHANGES IN VERSION 0.98.15
## SIGNIFICANT USER-VISIBLE CHANGES
* Enhancement https://github.com/HegemanLab/w4mclassfilter/issues/6 - "compute center for each treatment"
* Built with R 3.6.1 (2019-07-05) "Action of the Toes"
* Built with the command `R CMD build w4mclassfilter` to assure that vignettes are built as intended.
# CHANGES IN VERSION 0.98.14
## SIGNIFICANT USER-VISIBLE CHANGES
* Enhancement https://github.com/HegemanLab/w4mclassfilter_galaxy_wrapper/issues/6 - "Provide sort options for features and samples"
* Built with R 3.6.1 (2019-07-05) "Action of the Toes"
# CHANGES IN VERSION 0.98.13
## INTERNAL MODIFICATIONS
* Fix https://github.com/HegemanLab/w4mclassfilter/issues/5 - "MAXFEAT does not work for imputation functions that include data transformation"
* Built with R 3.6.1 (2019-07-05) "Action of the Toes"
# CHANGES IN VERSION 0.98.12
## SIGNIFICANT USER-VISIBLE CHANGES
* Enhancement https://github.com/HegemanLab/w4mclassfilter/issues/4 - "add and test no-imputation and centering-imputation functions":
- Support no imputation.
- Support imputating missing feature-intensities as median intensity for the corresponding feature.
## INTERNAL MODIFICATIONS
* Support and tests for new features.
* Built with R 3.6.1 (2019-07-05) "Action of the Toes"
* Version numbers 0.98.10 and 0.98.11 were skipped to synchronize with w4mclassfilter_galaxy_wrapper
# CHANGES IN VERSION 0.98.9
## INTERNAL MODIFICATIONS
* Fix https://github.com/HegemanLab/w4mclassfilter/issues/3 - "a single column is insufficient to calculate a variance"
* Built with R version 3.4.1 (2017-06-30) "Single Candle"
# CHANGES IN VERSION 0.98.8
## INTERNAL MODIFICATIONS
* Fix https://github.com/HegemanLab/w4mclassfilter/issues/1 - "bad error handling when input file cannot be found"
* Add tests for missing and invalid input files
* Built with R version 3.4.1 (2017-06-30) "Single Candle"
# CHANGES IN VERSION 0.98.7
## SIGNIFICANT USER-VISIBLE CHANGES
* First column of sample metadata is by default renamed to "sampleMetadata" unless argument 'name_smplmetadata_col1' is supplied and set to FALSE.
# CHANGES IN VERSION 0.98.6
## SIGNIFICANT USER-VISIBLE CHANGES
* Support eliminating features whose attributes fall outside specified ranges.
* Sort sample names and feature names because some statistical tools expect the same order in dataMatrix row and column names as in the corresponding metadata files.
## OTHER
* Support and tests for new features.
# CHANGES IN VERSION 0.98.3
## SIGNIFICANT USER-VISIBLE CHANGES
* Provide for more flexible input and output from env, list, or matrix/data.frame,
to facilitate use with XCMS outside of the context of Galaxy Workflow4Metabolomics.
## OTHER
* Support and tests for new features.
# CHANGES IN VERSION 0.98.2
## SIGNIFICANT USER-VISIBLE CHANGES
* Added support for R-flavored regular expression pattern matching.
* Empty classes argument or zero-length class_column result in no samples filtered out.
## OTHER
* Support and tests for new features.
# CHANGES IN VERSION 0.98.1
## SIGNIFICANT USER-VISIBLE CHANGES
* fixed defects in: w4m_filter_by_sample_class w4m_filter_imputation
* added: test data that exercises changes
# CHANGES IN VERSION 0.98.0
## SIGNIFICANT USER-VISIBLE CHANGES
* added: w4m_filter_by_sample_class w4m_filter_imputation