-
Notifications
You must be signed in to change notification settings - Fork 0
/
my_environment.yml
233 lines (233 loc) · 7.22 KB
/
my_environment.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
name: AioMinor
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _tflow_select=2.3.0=mkl
- absl-py=1.4.0=pyhd8ed1ab_0
- aiohttp=3.8.5=py38h01eb140_0
- aiosignal=1.3.1=pyhd8ed1ab_0
- amply=0.1.6=pyhd8ed1ab_0
- args=0.1.0=py38h32f6830_1003
- artic=1.2.3=pyhdfd78af_0
- artic-porechop=0.3.2pre=py38h2494328_5
- artic-tools=0.2.6=hee4d88c_0
- astor=0.8.1=pyh9f0ad1d_0
- astunparse=1.6.3=pyhd8ed1ab_0
- async-timeout=4.0.2=pyhd8ed1ab_0
- attrs=23.1.0=pyh71513ae_1
- bcftools=1.15.1=h0ea216a_0
- biopython=1.79=py38h0a891b7_3
- blas=1.1=openblas
- blinker=1.6.2=pyhd8ed1ab_0
- boost-cpp=1.70.0=h7b93d67_3
- bowtie2=2.4.1=py38h1c8e9b9_3
- brotli=1.0.9=h166bdaf_9
- brotli-bin=1.0.9=h166bdaf_9
- brotlipy=0.7.0=py38h0a891b7_1005
- bwa=0.7.17=he4a0461_11
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cachetools=5.3.1=pyhd8ed1ab_0
- certifi=2023.7.22=pyhd8ed1ab_0
- cffi=1.15.1=py38h4a40e3a_3
- charset-normalizer=3.2.0=pyhd8ed1ab_0
- click=8.1.6=unix_pyh707e725_0
- clint=0.5.1=py_1
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.9=hee58242_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- coloredlogs=15.0.1=py38h578d9bd_2
- colormath=3.0.0=py_2
- contourpy=1.1.0=py38h7f3f72f_0
- cryptography=41.0.2=py38h774aba0_0
- cycler=0.11.0=pyhd8ed1ab_0
- docutils=0.20.1=py38h578d9bd_0
- fonttools=4.42.0=py38h01eb140_0
- freetype=2.12.1=hca18f0e_1
- frozenlist=1.4.0=py38h01eb140_0
- future=0.18.3=pyhd8ed1ab_0
- gast=0.3.3=py_0
- gdbm=1.18=h0a1914f_2
- giflib=5.2.1=h0b41bf4_3
- google-auth=2.22.0=pyh1a96a4e_0
- google-auth-oauthlib=1.0.0=pyhd8ed1ab_1
- google-pasta=0.2.0=pyh8c360ce_0
- grpcio=1.51.1=py38h7dc2bf5_0
- gsl=2.7.1=h6e86dc7_1
- h5py=2.10.0=nompi_py38h9915d05_106
- hdf5=1.10.6=nompi_h6a2412b_1114
- htslib=1.15.1=h6bc39ce_1
- humanfriendly=10.0=py38h578d9bd_4
- icu=67.1=he1b5a44_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.8.0=pyha770c72_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- intervaltree=3.1.0=pyhd8ed1ab_1
- isa-l=2.30.0=ha770c72_4
- java-jdk=8.0.112=1
- jinja2=3.1.2=pyhd8ed1ab_1
- jpeg=9e=h0b41bf4_3
- k8=0.2.5=hdcf5f25_4
- keras-preprocessing=1.1.2=pyhd8ed1ab_0
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py38h43d8883_1
- krb5=1.20.1=hf9c8cef_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.40=h41732ed_0
- libabseil=20220623.0=cxx17_h05df665_6
- libblas=3.9.0=17_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_9
- libbrotlidec=1.0.9=h166bdaf_9
- libbrotlienc=1.0.9=h166bdaf_9
- libcblas=3.9.0=17_linux64_openblas
- libcurl=7.88.1=h91b91d3_2
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20221030=h5eee18b_0
- libev=4.33=h516909a_1
- libffi=3.4.4=h6a678d5_0
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=13.1.0=he5830b7_0
- libgfortran-ng=13.1.0=h69a702a_0
- libgfortran5=13.1.0=h15d22d2_0
- libgomp=13.1.0=he5830b7_0
- libgrpc=1.51.1=h05bd8bd_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=17_linux64_openblas
- liblapacke=3.9.0=17_linux64_openblas
- libnghttp2=1.52.0=ha637b67_1
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.23=pthreads_h80387f5_0
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=h3eb15da_0
- libsqlite=3.42.0=h2797004_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-ng=13.1.0=hfd8a6a1_0
- libtiff=4.2.0=hbd63e13_2
- libuuid=2.38.1=h0b41bf4_0
- libwebp=1.2.4=h11a3e52_1
- libwebp-base=1.2.4=h166bdaf_0
- libzlib=1.2.13=hd590300_5
- longshot=0.4.5=hd175d40_2
- lz4-c=1.9.3=h9c3ff4c_1
- lzstring=1.0.4=py_1001
- mappy=2.26=py38h7cf9df2_1
- markdown=3.4.4=pyhd8ed1ab_0
- markdown-it-py=3.0.0=pyhd8ed1ab_0
- markupsafe=2.1.3=py38h01eb140_0
- matplotlib-base=3.6.2=py38h945d387_0
- mdurl=0.1.0=pyhd8ed1ab_0
- medaka=1.6.1=py38h84d2cc8_0
- minimap2=2.24=h7132678_1
- multidict=6.0.4=py38h1de0b5d_0
- multiqc=1.13=pyhdfd78af_0
- munkres=1.1.4=pyh9f0ad1d_0
- muscle=3.8.1551=h7d875b9_6
- nanopolish=0.14.0=hd7c1219_0
- ncurses=6.4=hcb278e6_0
- networkx=3.1=pyhd8ed1ab_0
- numpy=1.19.5=py38h8246c76_3
- oauthlib=3.2.2=pyhd8ed1ab_0
- ont-fast5-api=4.1.1=pyhdfd78af_0
- ont_vbz_hdf_plugin=1.0.1=h3993559_0
- openblas=0.3.23=pthreads_h855a84d_0
- openjdk=8.0.112=zulu8.19.0.1_3
- openssl=1.1.1v=hd590300_0
- opt_einsum=3.3.0=pyhd8ed1ab_1
- packaging=23.1=pyhd8ed1ab_0
- pandas=1.4.4=py38h47df419_0
- parasail-python=1.3.4=py38h5cf8b27_0
- pbzip2=1.1.13=0
- perl=5.22.0.1=0
- perl-bio-db-sam=1.41=2
- perl-bioperl=1.6.924=4
- perl-data-dumper=2.161=pl5.22.0_0
- perl-getopt-long=2.50=pl5.22.0_0
- perl-list-util=1.38=pl5.22.0_0
- perl-math-cdf=0.1=3
- perl-test-more=1.001002=pl5.22.0_0
- perl-text-nsp=1.31=0
- perl-threaded=5.32.1=hdfd78af_1
- perl-yaml=1.24=pl522_1
- pigz=2.6=h27826a3_0
- pillow=9.4.0=py38h6a678d5_0
- pip=23.2.1=pyhd8ed1ab_0
- platformdirs=3.10.0=pyhd8ed1ab_0
- pluggy=1.2.0=pyhd8ed1ab_0
- pooch=1.7.0=pyha770c72_3
- progressbar33=2.4=py_0
- protobuf=4.21.12=py38h8dc9893_0
- pulp=2.7.0=py38h578d9bd_0
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.8=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pyfaidx=0.6.0=pyh5e36f6f_0
- pygments=2.16.1=pyhd8ed1ab_0
- pyjwt=2.8.0=pyhd8ed1ab_0
- pyopenssl=23.2.0=pyhd8ed1ab_1
- pyparsing=3.1.1=pyhd8ed1ab_0
- pysam=0.21.0=py38h1c8baaf_0
- pysocks=1.7.1=py38h578d9bd_5
- pyspoa=0.0.9=py38h2494328_0
- pytest=7.1.3=py38h578d9bd_0
- python=3.8.13=h582c2e5_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-edlib=1.3.9=py38h2494328_4
- python-isal=1.2.0=py38h01eb140_0
- python_abi=3.8=3_cp38
- pytz=2023.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyvcf=0.6.8=py38h32f6830_1002
- pyyaml=6.0=py38h0a891b7_5
- racon=1.5.0=h21ec9f0_2
- re2=2022.06.01=h27087fc_1
- readline=8.2=h8228510_1
- requests=2.28.2=pyhd8ed1ab_1
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rich=13.5.1=pyhd8ed1ab_0
- rich-click=1.6.1=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- samtools=1.15.1=h1170115_0
- scipy=1.10.1=py38h32ae08f_1
- setuptools=68.0.0=pyhd8ed1ab_0
- simplejson=3.19.1=py38h1de0b5d_0
- six=1.16.0=pyh6c4a22f_0
- sortedcontainers=2.4.0=pyhd8ed1ab_0
- spectra=0.0.11=py_1
- sqlite=3.42.0=h2c6b66d_0
- tar=1.34=hb2e2bae_1
- tbb=2020.3=hfd86e86_0
- tensorboard=2.13.0=pyhd8ed1ab_0
- tensorboard-data-server=0.7.0=py38h52d8a92_0
- tensorflow=2.2.0=mkl_py38h6d3daf0_0
- tensorflow-base=2.2.0=mkl_py38h5059a2d_0
- tensorflow-estimator=2.6.0=py38h709712a_0
- termcolor=2.3.0=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tomli=2.0.1=pyhd8ed1ab_0
- tqdm=4.64.1=pyhd8ed1ab_0
- typing-extensions=4.7.1=hd8ed1ab_0
- typing_extensions=4.7.1=pyha770c72_0
- unicodedata2=15.0.0=py38h0a891b7_0
- urllib3=1.26.16=py38h06a4308_0
- werkzeug=2.3.6=pyhd8ed1ab_0
- whatshap=2.0=py38h2494328_0
- wheel=0.41.1=pyhd8ed1ab_0
- wrapt=1.15.0=py38h1de0b5d_0
- xopen=1.7.0=py38h578d9bd_2
- xz=5.2.10=h5eee18b_1
- yaml=0.2.5=h7f98852_2
- yarl=1.9.2=py38h01eb140_0
- zipp=3.16.2=pyhd8ed1ab_0
- zlib=1.2.13=hd590300_5
- zstandard=0.19.0=py38h0a891b7_0
- zstd=1.4.9=ha95c52a_0