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Mapping of C9J6L7_HUMAN (and many other UP mnemonics) fails #281

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khituras opened this issue Sep 24, 2024 · 1 comment
Open

Mapping of C9J6L7_HUMAN (and many other UP mnemonics) fails #281

khituras opened this issue Sep 24, 2024 · 1 comment
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@khituras
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Investigate why C9J6L7_HUMAN is not properly recognized.
Its UniProt record shows a connection to HGNC:12340 which in turn maps to gene:7227.
Is this missing from the gene <-> uniprot mapping table we use?

@khituras khituras self-assigned this Sep 24, 2024
@khituras
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It appears that the gene <-> up mapping file (ftp://ftp.pir.georgetown.edu/databases/idmapping/idmapping.tb.gz) we used did not contain the gene ID for this UP record. The file seems to be rather incomplete in this sense which is quite unfortunate for GePI's purposes.

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